NO15G02250.1, NO15G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02250.1
Unique NameNO15G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length642
Alignment locationchr15:626916..627900 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:626916..627900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02250.1 vs.
Match: EWM22359.1 (mitochondrial 3-hydroxyisobutyryl [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 3.100e-76
Identity = 147/200 (73.50%), Postives = 165/200 (82.50%), Query Frame = 0 
Query:   15 QAFLGIRPSPVVCPPSSLSKRGATTLHDSDAFLPRSPPFRAPQSTQHAGEDLD-----TLQGRLFARDTRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMER 210
            Q F+  RP P+V P SS   RGATT HDSDA++P   PFRAPQSTQH G+D+D     TLQ RLF  D+RRVILFDG+CGFCSDVVN+FINFDGDPRGAFRFASLQGEIGQELL ANG+DT+HFNTIVLVDK++VFTSSDAVL+IA RLK+P PQLA+LAK ++PH   DALY FVSSNRHLLAGEKDSCRIP   E  R
Sbjct:  594 QGFITPRPLPLVAPFSS--HRGATTFHDSDAYMPSPSPFRAPQSTQHPGQDVDGTYTSTLQDRLFETDSRRVILFDGDCGFCSDVVNLFINFDGDPRGAFRFASLQGEIGQELLTANGLDTEHFNTIVLVDKDEVFTSSDAVLEIADRLKEPFPQLARLAKVLLPHVFRDALYSFVSSNRHLLAGEKDSCRIPRREEGRR 791
The following BLAST results are available for this feature:
BLAST of NO15G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22359.13.100e-7673.50mitochondrial 3-hydroxyisobutyryl [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02250NO15G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02250.1NO15G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02250.1.cds1NO15G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02250.1.cds2NO15G02250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02250.1.cds3NO15G02250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02250.1 ID=NO15G02250.1|Name=NO15G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=642bp
ATGAAGTTCCTAATGGCAGCCTTGCTTGGCGTGACCAGTACACAGGCGTT
CTTGGGTATCCGTCCCTCTCCCGTCGTTTGTCCTCCCTCATCCCTGTCGA
AACGTGGTGCCACTACCCTGCACGACTCGGACGCCTTTCTCCCCCGTTCT
CCCCCCTTCCGCGCACCACAAAGCACGCAACATGCCGGTGAAGACTTGGA
CACGTTGCAAGGCCGGTTATTTGCCAGAGACACCCGACGCGTGATTTTGT
TTGACGGCGAATGCGGTTTCTGCTCGGATGTTGTTAATATTTTCATCAAT
TTTGATGGGGATCCTCGCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGA
GATAGGACAAGAATTGTTGAAGGCCAACGGGATGGACACAAAGCATTTTA
ATACGATTGTATTGGTGGATAAGGAGCAGGTCTTTACCTCCTCCGACGCC
GTTCTTCAAATCGCCTCGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAA
GCTGGCCAAGGCCATCATTCCCCACGACATTCTAGACGCCCTCTACCACT
TTGTTTCATCGAATCGGCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGC
ATCCCAAGCGAGAGTGAAATGGAGCGGTTCTTGGACCAATAG
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protein sequence of NO15G02250.1

>NO15G02250.1-protein ID=NO15G02250.1-protein|Name=NO15G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MKFLMAALLGVTSTQAFLGIRPSPVVCPPSSLSKRGATTLHDSDAFLPRS
PPFRAPQSTQHAGEDLDTLQGRLFARDTRRVILFDGECGFCSDVVNIFIN
FDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDA
VLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCR
IPSESEMERFLDQ*
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mRNA from alignment at chr15:626916..627900+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02250.1 ID=NO15G02250.1|Name=NO15G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=985bp|location=Sequence derived from alignment at chr15:626916..627900+ (Nannochloropsis oceanica)
ATGAAGTTCCTAATGGCAGCCTTGCTTGGCGTGACCAGTACACAGGCGTT
CTTGGGTATCCGTCCCTCTCCCGTCGTTTGTCCTCCCTCATCCCTGTCGA
AACGTGGTGCCACTACCCTGCACGACTCGGACGCCTTTCTCCCCCGTTCT
CCCCCCTTCCGCGCACCACAAAGCACGCAACATGCCGGTGAAGACTTGGA
CACGTTGCAAGGCCGGTTATTTGCCAGAGACACCCGACGCGTGATTTTGT
TTGACGGCGGTATGTGAACCTGTTTCGTTGGTTTGGGTGGTGTGAGCCCA
AGTGCTTTTGTACTTGTGTGTATGTCCATGAACTTTGCCTTCTTTCCTTC
CCCCTCATTTCCCTTCCCTCTTTTTTTGTGCTCTACCGTCATAAACAGAA
TGCGGTTTCTGCTCGGATGTTGTTAATATTTTCATCAATTTTGATGGGGA
TCCTCGCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGAGATAGGACAAG
AATTGTTGAAGGCCAACGGGATGGACACAAAGCATTTTAATACGATTGTA
TTGGTGGATAAGGAGCAGGTACAACTTTTGAGCTCGCTGAGTGCTCCATG
GAATGTGTGTGGGTGAATTTTGTGAAGAGCTACGTGCATACATGCATGGG
CACCAAAAAGGCAAGAAAAAGCCTCATGAGTGCTTTGATTACTCCGTAAA
ATGTTTGGAATCACAGTGCTTCAATCCTCACTCACATCCCCTCCCCTCTT
TTTCCCCCTCCCACACACCTAGGTCTTTACCTCCTCCGACGCCGTTCTTC
AAATCGCCTCGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAAGCTGGCC
AAGGCCATCATTCCCCACGACATTCTAGACGCCCTCTACCACTTTGTTTC
ATCGAATCGGCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGCATCCCAA
GCGAGAGTGAAATGGAGCGGTTCTTGGACCAATAG
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Coding sequence (CDS) from alignment at chr15:626916..627900+

>NO15G02250.1 ID=NO15G02250.1|Name=NO15G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr15:626916..627900+ (Nannochloropsis oceanica)
ATGAAGTTCCTAATGGCAGCCTTGCTTGGCGTGACCAGTACACAGGCGTT
CTTGGGTATCCGTCCCTCTCCCGTCGTTTGTCCTCCCTCATCCCTGTCGA
AACGTGGTGCCACTACCCTGCACGACTCGGACGCCTTTCTCCCCCGTTCT
CCCCCCTTCCGCGCACCACAAAGCACGCAACATGCCGGTGAAGACTTGGA
CACGTTGCAAGGCCGGTTATTTGCCAGAGACACCCGACGCGTGATTTTGT
TTGACGGCGAATGCGGTTTCTGCTCGGATGTTGTTAATATTTTCATCAAT
TTTGATGGGGATCCTCGCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGA
GATAGGACAAGAATTGTTGAAGGCCAACGGGATGGACACAAAGCATTTTA
ATACGATTGTATTGGTGGATAAGGAGCAGGTCTTTACCTCCTCCGACGCC
GTTCTTCAAATCGCCTCGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAA
GCTGGCCAAGGCCATCATTCCCCACGACATTCTAGACGCCCTCTACCACT
TTGTTTCATCGAATCGGCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGC
ATCCCAAGCGAGAGTGAAATGGAGCGGTTCTTGGACCAATAG
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Synonyms
Publications