NO15G02220, NO15G02220 (gene) Nannochloropsis oceanica

Overview
NameNO15G02220
Unique NameNO15G02220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length773
Alignment locationchr15:621247..622019 +

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Properties
Property NameValue
DescriptionCdgsh iron sulfur domain-containing protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:621247..622019 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0043231intracellular membrane-bounded organelle
GO:0016020membrane
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR018967FeS-contain_CDGSH-typ
Homology
BLAST of NO15G02220 vs. NCBI_GenBank
Match: EWM22371.1 (cdgsh iron sulfur domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 166.0 bits (419), Expect = 6.400e-38
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0
Query:    1 MASELYKALEGHEMVIAAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGP 103
            MA+EL+KAL+GHE+V+AA++A L T FMI   +K   HVNP IKKDQPKVVD+FT+KDIED+MKKDKNGVVA+CRCWRSK FPLCDGSHT  NK CGDNVGP
Sbjct:   46 MAAELFKALQGHEVVMAAIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: OLQ13669.1 (Phospho-2-dehydro-3-deoxyheptonate aldolase [Symbiodinium microadriaticum])

HSP 1 Score: 99.4 bits (246), Expect = 7.400e-18
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 0
Query:   24 ATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            A  F++ K       VNP I K  PKV    TVKDIED + K  +G VA+CRCWRS  FP CDGSH ++N+ CGDN GP+V+ K
Sbjct:  752 AAAFLLAKATLKPTPVNPGIDKASPKVATVMTVKDIEDALSKSSSGKVALCRCWRSSKFPFCDGSHGKYNEACGDNTGPLVVSK 835          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: XP_005425598.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Geospiza fortis] >XP_005425599.1 PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Geospiza fortis] >XP_005425600.1 PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Geospiza fortis])

HSP 1 Score: 98.6 bits (244), Expect = 1.300e-17
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0
Query:   17 AAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            AA L  LA   ++ KDK     VNP+I+KD PKVV AF ++D+ D            CRCWRSK FPLCDGSHT+HN+  GDNVGP+++K+
Sbjct:   23 AAALGYLAYKALLCKDKSSKAMVNPNIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKR 105          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: XP_014123235.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Zonotrichia albicollis])

HSP 1 Score: 97.8 bits (242), Expect = 2.100e-17
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0
Query:   17 AAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            AA L  LA   ++ KDK     VNP+I+KD PKVV AF ++D+ D            CRCWRSK FPLCDGSHT+HN+  GDNVGP+++K+
Sbjct:   23 AAALGYLAYKAILCKDKASKAMVNPNIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKR 105          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: KFQ42623.1 (CDGSH iron-sulfur domain-containing protein 1, partial [Nestor notabilis])

HSP 1 Score: 96.3 bits (238), Expect = 6.200e-17
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 0
Query:   17 AAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            AAV+  LA  F + KDK+    VNP I+KD PKVV AF ++D+ D            CRCWRSK FPLCDGSHT+HN+  GDNVGP+++K+
Sbjct:   17 AAVVGYLAYRF-LSKDKRSKAMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKR 98          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: XP_010013463.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein 1, partial [Nestor notabilis])

HSP 1 Score: 96.3 bits (238), Expect = 6.200e-17
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 0
Query:   17 AAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            AAV+  LA  F + KDK+    VNP I+KD PKVV AF ++D+ D            CRCWRSK FPLCDGSHT+HN+  GDNVGP+++K+
Sbjct:   12 AAVVGYLAYRF-LSKDKRSKAMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKR 93          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: KFO94339.1 (CDGSH iron-sulfur domain-containing protein 1, partial [Buceros rhinoceros silvestris])

HSP 1 Score: 95.9 bits (237), Expect = 8.200e-17
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 0
Query:   17 AAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            AA +  LA    + KDK     VNP I+KD PKVV AF V+D+ D            CRCWRSK FPLCDGSHT+HN+  GDNVGP+++K+
Sbjct:   17 AAAVGYLAYKKFLSKDKCCKAMVNPHIQKDNPKVVHAFDVEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKR 99          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: KFR10969.1 (CDGSH iron-sulfur domain-containing protein 1, partial [Opisthocomus hoazin])

HSP 1 Score: 95.9 bits (237), Expect = 8.200e-17
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 0
Query:   17 AAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            AA +  LA   ++ KDK     VNP I+KD PKVV AF ++D+ D            CRCWRSK FPLCDGSHT+HN+  GDNVGP+++K+
Sbjct:   17 AAAIGYLAYKKLLCKDKCCKAMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKR 99          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: KFV48266.1 (CDGSH iron-sulfur domain-containing protein 1, partial [Tyto alba])

HSP 1 Score: 95.9 bits (237), Expect = 8.200e-17
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 0
Query:   17 AAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            AAV+  LA    + KDK     VNP I+KD PKVV AF ++D+ D            CRCWRSK FPLCDGSHT+HN+  GDNVGP+++K+
Sbjct:   18 AAVVGYLAYRKFLSKDKCCKAMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKR 100          
BLAST of NO15G02220 vs. NCBI_GenBank
Match: XP_009933239.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 [Opisthocomus hoazin])

HSP 1 Score: 95.9 bits (237), Expect = 8.200e-17
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 0
Query:   17 AAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGPVVLKK 108
            AA +  LA   ++ KDK     VNP I+KD PKVV AF ++D+ D            CRCWRSK FPLCDGSHT+HN+  GDNVGP+++K+
Sbjct:   15 AAAIGYLAYKKLLCKDKCCKAMVNPHIQKDNPKVVHAFDMEDLGDK--------AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKR 97          
The following BLAST results are available for this feature:
BLAST of NO15G02220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22371.16.400e-3874.51cdgsh iron sulfur domain-containing protein 1 [Nan... [more]
OLQ13669.17.400e-1852.38Phospho-2-dehydro-3-deoxyheptonate aldolase [Symbi... [more]
XP_005425598.11.300e-1751.65PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
XP_014123235.12.100e-1751.65PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
KFQ42623.16.200e-1752.75CDGSH iron-sulfur domain-containing protein 1, par... [more]
XP_010013463.16.200e-1752.75PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
KFO94339.18.200e-1751.65CDGSH iron-sulfur domain-containing protein 1, par... [more]
KFR10969.18.200e-1750.55CDGSH iron-sulfur domain-containing protein 1, par... [more]
KFV48266.18.200e-1751.65CDGSH iron-sulfur domain-containing protein 1, par... [more]
XP_009933239.18.200e-1750.55PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001374NSK001374Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02220.1NO15G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587861gene_4774Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CISD1gene8068Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02220.1NO15G02220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02220 ID=NO15G02220|Name=NO15G02220|organism=Nannochloropsis oceanica|type=gene|length=773bp
ATGGCCTCAGAGCTCTACAAAGCCCTCGAAGGGCACGAGATGGTGATCGC
TGCTGTATTGGCCTTACTAGCGACGGTCTTCATGATTTTCAAGGACAAGA
AAGTGACCATGCACGTCAACCCTTgtaagattaaaaggagaggtttcgac
tgatgtgtgcgcagttaagtgcggggtctcatgcttgtctttcacgtatt
tctcacctttacaacagCTATAAAGAAGGATCAGCCCAAGGTAGTAGATG
CATTTACCGTGAAGGgtacgttgcgaaaaggacggatgcggcgggaagtg
tgcatggatgtgtcttccctgggtgcttgcttgatttgtgcagcagagca
tgccttggactacatgtttgaggctggtgaaccttcgcttcacccattgg
taactttcccagcccaccttgtaggagtgaatcacagcctttgtgtccca
ttcacacttgtcgtccttcaaccttttcaacacaatcagACATTGAAGAC
ATGATGAAGAAAGATAAGAACGGGGTGGTAGCCATGTGCCGGTGCTGGCG
CAGCAAGACCTTCCCCTTGTGTGATGGCTCACACACCGAACACAACAAGA
GATGTGGCGATAAgtaagttgttatggcaggccgttccctccttcctctc
ttcctccttccttccccttctccattaatcactacacatcttcattccct
cccttcaacttccgcccctccccccttccatcctccctaccctagCGTTG
GGCCCGTGGTGCTCAAAAAGTAG
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protein sequence of NO15G02220.1

>NO15G02220.1-protein ID=NO15G02220.1-protein|Name=NO15G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MASELYKALEGHEMVIAAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKV
VDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNV
GPVVLKK*
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Synonyms
Publications