NO15G02220.1, NO15G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02220.1
Unique NameNO15G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length324
Alignment locationchr15:621247..622019 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:621247..622019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G02220.1 vs.
Match: EWM22371.1 (cdgsh iron sulfur domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 166.0 bits (419), Expect = 6.400e-38
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0 
Query:    1 MASELYKALEGHEMVIAAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKVVDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNVGP 103
            MA+EL+KAL+GHE+V+AA++A L T FMI   +K   HVNP IKKDQPKVVD+FT+KDIED+MKKDKNGVVA+CRCWRSK FPLCDGSHT  NK CGDNVGP
Sbjct:   46 MAAELFKALQGHEVVMAAIVAFLVTAFMILTGRKGGQHVNPGIKKDQPKVVDSFTMKDIEDLMKKDKNGVVAICRCWRSKNFPLCDGSHTAFNKTCGDNVGP 147
The following BLAST results are available for this feature:
BLAST of NO15G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22371.16.400e-3874.51cdgsh iron sulfur domain-containing protein 1 [Nan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02220NO15G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02220.1NO15G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02220.1.cds1NO15G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02220.1.cds2NO15G02220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02220.1.cds3NO15G02220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02220.1.cds4NO15G02220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02220.1 ID=NO15G02220.1|Name=NO15G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=324bp
ATGGCCTCAGAGCTCTACAAAGCCCTCGAAGGGCACGAGATGGTGATCGC
TGCTGTATTGGCCTTACTAGCGACGGTCTTCATGATTTTCAAGGACAAGA
AAGTGACCATGCACGTCAACCCTTCTATAAAGAAGGATCAGCCCAAGGTA
GTAGATGCATTTACCGTGAAGGACATTGAAGACATGATGAAGAAAGATAA
GAACGGGGTGGTAGCCATGTGCCGGTGCTGGCGCAGCAAGACCTTCCCCT
TGTGTGATGGCTCACACACCGAACACAACAAGAGATGTGGCGATAACGTT
GGGCCCGTGGTGCTCAAAAAGTAG
back to top

protein sequence of NO15G02220.1

>NO15G02220.1-protein ID=NO15G02220.1-protein|Name=NO15G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MASELYKALEGHEMVIAAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKV
VDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNV
GPVVLKK*
back to top

mRNA from alignment at chr15:621247..622019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02220.1 ID=NO15G02220.1|Name=NO15G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=773bp|location=Sequence derived from alignment at chr15:621247..622019+ (Nannochloropsis oceanica)
ATGGCCTCAGAGCTCTACAAAGCCCTCGAAGGGCACGAGATGGTGATCGC
TGCTGTATTGGCCTTACTAGCGACGGTCTTCATGATTTTCAAGGACAAGA
AAGTGACCATGCACGTCAACCCTTGTAAGATTAAAAGGAGAGGTTTCGAC
TGATGTGTGCGCAGTTAAGTGCGGGGTCTCATGCTTGTCTTTCACGTATT
TCTCACCTTTACAACAGCTATAAAGAAGGATCAGCCCAAGGTAGTAGATG
CATTTACCGTGAAGGGTACGTTGCGAAAAGGACGGATGCGGCGGGAAGTG
TGCATGGATGTGTCTTCCCTGGGTGCTTGCTTGATTTGTGCAGCAGAGCA
TGCCTTGGACTACATGTTTGAGGCTGGTGAACCTTCGCTTCACCCATTGG
TAACTTTCCCAGCCCACCTTGTAGGAGTGAATCACAGCCTTTGTGTCCCA
TTCACACTTGTCGTCCTTCAACCTTTTCAACACAATCAGACATTGAAGAC
ATGATGAAGAAAGATAAGAACGGGGTGGTAGCCATGTGCCGGTGCTGGCG
CAGCAAGACCTTCCCCTTGTGTGATGGCTCACACACCGAACACAACAAGA
GATGTGGCGATAAGTAAGTTGTTATGGCAGGCCGTTCCCTCCTTCCTCTC
TTCCTCCTTCCTTCCCCTTCTCCATTAATCACTACACATCTTCATTCCCT
CCCTTCAACTTCCGCCCCTCCCCCCTTCCATCCTCCCTACCCTAGCGTTG
GGCCCGTGGTGCTCAAAAAGTAG
back to top

Coding sequence (CDS) from alignment at chr15:621247..622019+

>NO15G02220.1 ID=NO15G02220.1|Name=NO15G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at chr15:621247..622019+ (Nannochloropsis oceanica)
ATGGCCTCAGAGCTCTACAAAGCCCTCGAAGGGCACGAGATGGTGATCGC
TGCTGTATTGGCCTTACTAGCGACGGTCTTCATGATTTTCAAGGACAAGA
AAGTGACCATGCACGTCAACCCTTCTATAAAGAAGGATCAGCCCAAGGTA
GTAGATGCATTTACCGTGAAGGACATTGAAGACATGATGAAGAAAGATAA
GAACGGGGTGGTAGCCATGTGCCGGTGCTGGCGCAGCAAGACCTTCCCCT
TGTGTGATGGCTCACACACCGAACACAACAAGAGATGTGGCGATAACGTT
GGGCCCGTGGTGCTCAAAAAGTAG
back to top
Synonyms
Publications