NO15G01960, NO15G01960 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G01960
Unique Name	NO15G01960
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3773
Alignment location	chr15:547812..551584 -

Link to JBrowse

Properties


Property Name	Value
Description	Pre-mrna-processing factor 40

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:547812..551584 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036517	FF_domain_sf
IPR036020	WW_dom_sf
IPR001202	WW_dom
IPR002713	FF_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0045292	mRNA cis splicing, via spliceosome

Homology

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BLAST of NO15G01960 vs. NCBI_GenBank
Match: EWM22405.1 (pre-mrna-processing factor 40 [Nannochloropsis gaditana])

HSP 1 Score: 606.3 bits (1562), Expect = 1.800e-169
Identity = 379/654 (57.95%), Postives = 432/654 (66.06%), Query Frame = 0

Query:  217 WTDHAGQDGKTYYHNRVTKVSTYDKPACLRPPPKLAPIPPGPPSSLPPCRWKEYTTAEGKTYYSDGKESLWVEPDELKEHKAKQARRDAGEDNEEEGVEVVQHVVPAVALAQQKAAVETIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHQTFNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKTGEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGL-PRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQGGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALG-------DGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDLLLEYYWRSDHVDVSWEEAQRDLKRHSAFNALEAEETKALFEEHMAMLKGK 863
            WT+HAGQDGKTYYHNRVTK+STYDKPACL PP K AP+P                          GKESLW EP ELK HKA+QA  DAGE      VEVV     A   AQQKAAVETIE+                                                 +F T EEAVA FK++LY KGVSSTAKWAD+PK+LSK+ VWS LKTGEKKQAFAEYQTKR    XXXX        D FLKML ECV+IDS+SRW+ AEELL ED RFK+++L+LHDKEDVF+DF+TELAKKEKEEKRLN+KAFA LLR+YAGL P  EG                     G  L RGM WREAQ VLD R RGEEE RLR+LVEEVDQ+HA+E            +KR                FR VL  LAE+G++DMRS+WK+LK VIE+ + YK+++GQGG TAAELFE+FV++LKGRYAEDKR++RDYLPRAGAEVT EW +E YV+ I KALG         XXXXXXXXXXXXXXXXXX     + SRRL+EFK+M A RPKHV AAF ELH RAVE++EEE +RREKR  RYRDLLLEYYWRSDHVDV+W EAQ DL+RHSA+N LE EE KALFEEHMAML+ K
Sbjct:   94 WTEHAGQDGKTYYHNRVTKISTYDKPACLEPPRKPAPVPXXXXXXXXXXXXXXXXXXXXXXXXXXGKESLWEEPAELKAHKAEQAALDAGE------VEVVVGSAAASLQAQQKAAVETIEILDDGASDEEVGKAGRAGTNGVAAAKSGLAAVVLKAAVKPEPPDERDGPPSFGTTEEAVAAFKQMLYDKGVSSTAKWADIPKMLSKQPVWSALKTGEKKQAFAEYQTKRXXXXXXXXXXXXXXXXDGFLKMLAECVQIDSQSRWQEAEELLKEDPRFKSSELALHDKEDVFHDFVTELAKKEKEEKRLNQKAFAGLLRRYAGLSPPGEG-----------EEGAAESGEEGPALRRGMSWREAQAVLDVRARGEEEGRLRELVEEVDQKHAFEDVLEELEVAHREQKRXXXXXXXXXXXXXXXAFREVLEGLAEDGVVDMRSRWKHLKPVIEKEDAYKVMMGQGGLTAAELFERFVDDLKGRYAEDKRRLRDYLPRAGAEVTAEWDQETYVNAILKALGGKTEXXXXXXXXXXXXXXXXXXXXXXXLESGRRTSRRLQEFKEMFARRPKHVEAAFEELHTRAVEMREEEARRREKRRCRYRDLLLEYYWRSDHVDVTWAEAQEDLERHSAYNDLEPEERKALFEEHMAMLQAK 730

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BLAST of NO15G01960 vs. NCBI_GenBank
Match: EWM22406.1 (pre-mrna-processing factor 40 [Nannochloropsis gaditana])

HSP 1 Score: 606.3 bits (1562), Expect = 1.800e-169
Identity = 379/654 (57.95%), Postives = 432/654 (66.06%), Query Frame = 0

Query:  217 WTDHAGQDGKTYYHNRVTKVSTYDKPACLRPPPKLAPIPPGPPSSLPPCRWKEYTTAEGKTYYSDGKESLWVEPDELKEHKAKQARRDAGEDNEEEGVEVVQHVVPAVALAQQKAAVETIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHQTFNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKTGEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGL-PRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQGGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALG-------DGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDLLLEYYWRSDHVDVSWEEAQRDLKRHSAFNALEAEETKALFEEHMAMLKGK 863
            WT+HAGQDGKTYYHNRVTK+STYDKPACL PP K AP+P                          GKESLW EP ELK HKA+QA  DAGE      VEVV     A   AQQKAAVETIE+                                                 +F T EEAVA FK++LY KGVSSTAKWAD+PK+LSK+ VWS LKTGEKKQAFAEYQTKR    XXXX        D FLKML ECV+IDS+SRW+ AEELL ED RFK+++L+LHDKEDVF+DF+TELAKKEKEEKRLN+KAFA LLR+YAGL P  EG                     G  L RGM WREAQ VLD R RGEEE RLR+LVEEVDQ+HA+E            +KR                FR VL  LAE+G++DMRS+WK+LK VIE+ + YK+++GQGG TAAELFE+FV++LKGRYAEDKR++RDYLPRAGAEVT EW +E YV+ I KALG         XXXXXXXXXXXXXXXXXX     + SRRL+EFK+M A RPKHV AAF ELH RAVE++EEE +RREKR  RYRDLLLEYYWRSDHVDV+W EAQ DL+RHSA+N LE EE KALFEEHMAML+ K
Sbjct:  116 WTEHAGQDGKTYYHNRVTKISTYDKPACLEPPRKPAPVPXXXXXXXXXXXXXXXXXXXXXXXXXXGKESLWEEPAELKAHKAEQAALDAGE------VEVVVGSAAASLQAQQKAAVETIEILDDGASDEEVGKAGRAGTNGVAAAKSGLAAVVLKAAVKPEPPDERDGPPSFGTTEEAVAAFKQMLYDKGVSSTAKWADIPKMLSKQPVWSALKTGEKKQAFAEYQTKRXXXXXXXXXXXXXXXXDGFLKMLAECVQIDSQSRWQEAEELLKEDPRFKSSELALHDKEDVFHDFVTELAKKEKEEKRLNQKAFAGLLRRYAGLSPPGEG-----------EEGAAESGEEGPALRRGMSWREAQAVLDVRARGEEEGRLRELVEEVDQKHAFEDVLEELEVAHREQKRXXXXXXXXXXXXXXXAFREVLEGLAEDGVVDMRSRWKHLKPVIEKEDAYKVMMGQGGLTAAELFERFVDDLKGRYAEDKRRLRDYLPRAGAEVTAEWDQETYVNAILKALGGKTEXXXXXXXXXXXXXXXXXXXXXXXLESGRRTSRRLQEFKEMFARRPKHVEAAFEELHTRAVEMREEEARRREKRRCRYRDLLLEYYWRSDHVDVTWAEAQEDLERHSAYNDLEPEERKALFEEHMAMLQAK 752

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BLAST of NO15G01960 vs. NCBI_GenBank
Match: XP_010520792.1 (PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing protein 40A [Tarenaya hassleriana])

HSP 1 Score: 127.9 bits (320), Expect = 1.900e-25
Identity = 100/349 (28.65%), Postives = 167/349 (47.85%), Query Frame = 0

Query:  389 FNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKT-GEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGLPRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQ-GGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALG 736
            + T +EA A FK LL    V S   W    K +  +  +S L+T GE+KQAF EY  +R K E    R R +KAR+ F+KML EC E+ S  +W  A  L   D RFK  + +  D+E +F +++ +L KKE+E+     +   A  RK+                              +++    +WR+ +E+L+     ++ER LR  +E++D+   YE             KR E+E  R+ E + R  FR ++      G+L  ++ W++    ++   +Y+ +     G+T  +LFE  +EEL+ +Y +DK  ++D +      +   WT E + S + + LG
Sbjct:  404 YATKQEAKAAFKHLLESVNVQSDWTWEQAMKEIVNDRRYSALRTLGERKQAFNEYLGQRKKVEAEERRMRQKKAREDFVKMLEECEELSSSMKWSKAVSLFENDERFKAVERT-RDREALFENYMLDLEKKEREKAVEEHRQNMAEYRKF------------------------LETCDFIKVT--SQWRKVEELLE-----DDERCLR--LEKIDRLIGYEEYVFDLEKEEEEHKRVEKEQIRRAERKNRDAFRTLMQDHVAAGILTAKTYWRDYCMKVKDLPQYQAVASNTSGSTPKDLFEDVIEELEKQYHDDKSCIKDAMKSRKISIGCSWTFEDFKSALSEDLG 718

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BLAST of NO15G01960 vs. NCBI_GenBank
Match: CDP01015.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 126.3 bits (316), Expect = 5.600e-25
Identity = 124/481 (25.78%), Postives = 217/481 (45.11%), Query Frame = 0

Query:  389 FNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKT-GEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEK----EEKRLNKKAFAALLRKYAGLPRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYK-IIIGQGGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALGDGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDLLLEYYWRSDHVDVSWEEAQRDLKRHSAFNAL-EAEETKALFEEHMAMLKGK 863
            F   +EA   FK LL    V +   W    +++  +  +  LKT GE+KQAF EY  +R K E    R R RKA++ F KML EC E+ S +RW  A  +L +D RFK  +    D+ED+F  ++ +L KKE+    EE R N+  +   L +  G  + +                              +WR+ Q++L+     ++ER  R  ++++D+   ++       XXXX               + R  FR ++      G+L+ ++ W++    ++ TE Y+ + +   G+T  +LFE  +EEL+ +Y +DK +++D +      V P WT E + + I++++                            S  + +    L          F +L +RA E +E+E K+R++    + DLL     +      +WEE++  L+  S + ++ E    K +FEE++A L+ K
Sbjct:  226 FTNKQEAKNAFKALLESANVEADWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLMQRKKIEAEERRLRQRKAKEEFTKMLEECRELTSLTRWSKAVTMLEDDERFKAVEKE-SDREDLFRSYLVDLQKKERVKAQEEHRRNRSEYRQFL-ETCGFIKVDS-----------------------------QWRKVQDLLE-----DDERCSR--LDKIDRLEIFQEYIRDLEXXXXXXXXXXXXXXXXXXXKNRDAFRKLMEEHIAAGILNAKTLWRDYCQKVKDTEAYQAVALNTSGSTPMDLFEDVLEELENQYHDDKTRIKDAVKLEKISVLPMWTLEDFKAAIKESI----------------------------SSEVSDINLQL---------VFEDLLERAKEKEEKEAKKRQRLAKDFSDLLSTI--KEITATSNWEESKELLEDSSEYRSIGEENSCKEIFEEYIARLQEK 629

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BLAST of NO15G01960 vs. NCBI_GenBank
Match: PKI72468.1 (hypothetical protein CRG98_007135 [Punica granatum])

HSP 1 Score: 125.6 bits (314), Expect = 9.500e-25
Identity = 123/478 (25.73%), Postives = 215/478 (44.98%), Query Frame = 0

Query:  388 TFNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKT-GEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGLPRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQ-GGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALGDGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDLLLEYYWRSDHVDVSWEEAQRDLKRHSAFNAL-EAEETKALFEEHMAMLKGK 863
            T+ + +EA   FK LL    V S   W    + +  +  +  LKT GE+KQAF EY  +R K E    R R +KAR+ F KML EC E+ S  +W  A  +   D RFK  + +  D+ED+F+ F+ +L +KEKE+     +      RKY      E                         +    +WR   +++DR    ++ER LR  +E++D+   Y+             K+ ++E  R+ E + R  FR ++   A  G+L  ++ W++    ++ + EY+ +     G+T  ELFE   EEL+ ++ EDK +++D +      +   WT E + + +   LG                                    +++E   ++   + EL +RA E +E+E K+R++    +  LL  + ++   +  +WEE +  ++    F ++ E    K +FEE++A L+ K
Sbjct:   23 TYPSKQEAKNAFKALLESFNVQSDWTWEHAMREIINDKRYGALKTLGERKQAFNEYLGQRRKLEAEERRVRQKKAREEFTKMLEECKELTSSIKWSKAVSMFENDERFKAVEKN-RDREDLFDSFMVDLERKEKEKAAEEHRHNITEYRKYL-----ESCDF---------------------IKVNSQWR---KIIDR--LEDDERYLR--LEKIDRLLIYQDYIRDMEKEEEEGKKIQKEQTRRAERKNRDEFRKLMEGHASAGILTAKTHWRDYCLKVKDSAEYQAVASNTSGSTPRELFEDVAEELEVKFYEDKVRVKDAMKSGKVSMVSTWTFEDFRAGVLDNLG----------------------------------HPLISE--INLELVYKELLERAKEKEEKEAKKRQRIADDFTRLL--HTFKEITLSSTWEECKPLVEESYEFKSVGEESSAKEIFEEYIAHLQEK 428

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BLAST of NO15G01960 vs. NCBI_GenBank
Match: CDY12575.1 (BnaC06g01010D [Brassica napus])

HSP 1 Score: 124.0 bits (310), Expect = 2.800e-24
Identity = 114/426 (26.76%), Postives = 185/426 (43.43%), Query Frame = 0

Query:  389 FNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKT-GEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGLPRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQ-GGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALGDGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDL 813
            + T +EA A FK LL    V S   W    K++  +  +  L+T GE+KQAF EY  +R K E    R R +KAR+ F+KML EC E+ S  +W  A  L   D RFK  D    D+ED+F+++I EL +KE+E+     +   A  RK+                                +    +WR+ Q+ L+     ++ER     +E++D+   +E             KR E+E  R+ E + R  FR +L      G+L  ++ W      +    +Y+ +     G+T  +LFE+  EEL+ +Y EDK +++D +      +   W  E + S + + L                          KE+R+L    Q LAE   ++   F E++  +     E+VK+  +    YR +
Sbjct:   53 YATKQEAKAAFKSLLESVNVQSDWTWEQTTKVIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRP-RDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCD--------------------------YIKASTQWRKIQDRLE-----DDER--CSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEEITEELEKQYHEDKSRVKDAMKSRKVSMVSSWVFEDFKSALSEDLSSQPISDINLKLIYNELVERMKEKEEKEARKL----QRLAEEFTNLLRTFKEINAAS---NWEDVKQLVEESQEYRSI 437

[Close]

BLAST of NO15G01960 vs. NCBI_GenBank
Match: XP_013592190.1 (PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 124.0 bits (310), Expect = 2.800e-24
Identity = 114/426 (26.76%), Postives = 185/426 (43.43%), Query Frame = 0

Query:  389 FNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKT-GEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGLPRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQ-GGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALGDGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDL 813
            + T +EA A FK LL    V S   W    K++  +  +  L+T GE+KQAF EY  +R K E    R R +KAR+ F+KML EC E+ S  +W  A  L   D RFK  D    D+ED+F+++I EL +KE+E+     +   A  RK+                                +    +WR+ Q+ L+     ++ER     +E++D+   +E             KR E+E  R+ E + R  FR +L      G+L  ++ W      +    +Y+ +     G+T  +LFE+  EEL+ +Y EDK +++D +      +   W  E + S + + L                          KE+R+L    Q LAE   ++   F E++  +     E+VK+  +    YR +
Sbjct:  339 YATKQEAKAAFKSLLESVNVQSDWTWEQTTKVIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRP-RDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCD--------------------------YIKASTQWRKIQDRLE-----DDER--CSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEEITEELEKQYHEDKSRVKDAMKSRKVSMVSSWVFEDFKSALSEDLSSQPISDINLKLIYNELVERMKEKEEKEARKL----QRLAEEFTNLLRTFKEINAAS---NWEDVKQLVEESQEYRSI 723

[Close]

BLAST of NO15G01960 vs. NCBI_GenBank
Match: XP_013592191.1 (PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Brassica oleracea var. oleracea])

HSP 1 Score: 124.0 bits (310), Expect = 2.800e-24
Identity = 114/426 (26.76%), Postives = 185/426 (43.43%), Query Frame = 0

Query:  389 FNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKT-GEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGLPRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQ-GGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALGDGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDL 813
            + T +EA A FK LL    V S   W    K++  +  +  L+T GE+KQAF EY  +R K E    R R +KAR+ F+KML EC E+ S  +W  A  L   D RFK  D    D+ED+F+++I EL +KE+E+     +   A  RK+                                +    +WR+ Q+ L+     ++ER     +E++D+   +E             KR E+E  R+ E + R  FR +L      G+L  ++ W      +    +Y+ +     G+T  +LFE+  EEL+ +Y EDK +++D +      +   W  E + S + + L                          KE+R+L    Q LAE   ++   F E++  +     E+VK+  +    YR +
Sbjct:  338 YATKQEAKAAFKSLLESVNVQSDWTWEQTTKVIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRP-RDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCD--------------------------YIKASTQWRKIQDRLE-----DDER--CSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEEITEELEKQYHEDKSRVKDAMKSRKVSMVSSWVFEDFKSALSEDLSSQPISDINLKLIYNELVERMKEKEEKEARKL----QRLAEEFTNLLRTFKEINAAS---NWEDVKQLVEESQEYRSI 722

[Close]

BLAST of NO15G01960 vs. NCBI_GenBank
Match: XP_013592192.1 (PREDICTED: pre-mRNA-processing protein 40A isoform X3 [Brassica oleracea var. oleracea])

HSP 1 Score: 124.0 bits (310), Expect = 2.800e-24
Identity = 114/426 (26.76%), Postives = 185/426 (43.43%), Query Frame = 0

Query:  389 FNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKT-GEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGLPRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQ-GGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALGDGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDL 813
            + T +EA A FK LL    V S   W    K++  +  +  L+T GE+KQAF EY  +R K E    R R +KAR+ F+KML EC E+ S  +W  A  L   D RFK  D    D+ED+F+++I EL +KE+E+     +   A  RK+                                +    +WR+ Q+ L+     ++ER     +E++D+   +E             KR E+E  R+ E + R  FR +L      G+L  ++ W      +    +Y+ +     G+T  +LFE+  EEL+ +Y EDK +++D +      +   W  E + S + + L                          KE+R+L    Q LAE   ++   F E++  +     E+VK+  +    YR +
Sbjct:  339 YATKQEAKAAFKSLLESVNVQSDWTWEQTTKVIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRP-RDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCD--------------------------YIKASTQWRKIQDRLE-----DDER--CSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEEITEELEKQYHEDKSRVKDAMKSRKVSMVSSWVFEDFKSALSEDLSSQPISDINLKLIYNELVERMKEKEEKEARKL----QRLAEEFTNLLRTFKEINAAS---NWEDVKQLVEESQEYRSI 723

[Close]

BLAST of NO15G01960 vs. NCBI_GenBank
Match: XP_013592193.1 (PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Brassica oleracea var. oleracea])

HSP 1 Score: 124.0 bits (310), Expect = 2.800e-24
Identity = 114/426 (26.76%), Postives = 185/426 (43.43%), Query Frame = 0

Query:  389 FNTHEEAVAGFKRLLYVKGVSSTAKWADMPKLLSKEAVWSILKT-GEKKQAFAEYQTKRMKEEXXXXRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLSLHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGLPRKEGXXXXXXXXXXXXXXXXXXXXXGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVEEVDQRHAYEXXXXXXXXXXXMRKRAEREARRKVEEERRGRFRLVLVRLAEEGLLDMRSKWKNLKSVIEQTEEYKIIIGQ-GGATAAELFEKFVEELKGRYAEDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALGDGXXXXXXXXXXXXXXXXXXXXXXXKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVKRREKRLGRYRDL 813
            + T +EA A FK LL    V S   W    K++  +  +  L+T GE+KQAF EY  +R K E    R R +KAR+ F+KML EC E+ S  +W  A  L   D RFK  D    D+ED+F+++I EL +KE+E+     +   A  RK+                                +    +WR+ Q+ L+     ++ER     +E++D+   +E             KR E+E  R+ E + R  FR +L      G+L  ++ W      +    +Y+ +     G+T  +LFE+  EEL+ +Y EDK +++D +      +   W  E + S + + L                          KE+R+L    Q LAE   ++   F E++  +     E+VK+  +    YR +
Sbjct:  338 YATKQEAKAAFKSLLESVNVQSDWTWEQTTKVIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRP-RDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCD--------------------------YIKASTQWRKIQDRLE-----DDER--CSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEEITEELEKQYHEDKSRVKDAMKSRKVSMVSSWVFEDFKSALSEDLSSQPISDINLKLIYNELVERMKEKEEKEARKL----QRLAEEFTNLLRTFKEINAAS---NWEDVKQLVEESQEYRSI 722

The following BLAST results are available for this feature:

BLAST of NO15G01960 vs. NCBI_GenBank

BLAST of NO15G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM22405.1	1.800e-169	57.95	pre-mrna-processing factor 40 [Nannochloropsis gad...	[more]
EWM22406.1	1.800e-169	57.95	pre-mrna-processing factor 40 [Nannochloropsis gad...	[more]
XP_010520792.1	1.900e-25	28.65	PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processin...	[more]
CDP01015.1	5.600e-25	25.78	unnamed protein product [Coffea canephora]	[more]
PKI72468.1	9.500e-25	25.73	hypothetical protein CRG98_007135 [Punica granatum...	[more]
CDY12575.1	2.800e-24	26.76	BnaC06g01010D [Brassica napus]	[more]
XP_013592190.1	2.800e-24	26.76	PREDICTED: pre-mRNA-processing protein 40A isoform...	[more]
XP_013592191.1	2.800e-24	26.76	PREDICTED: pre-mRNA-processing protein 40A isoform...	[more]
XP_013592192.1	2.800e-24	26.76	PREDICTED: pre-mRNA-processing protein 40A isoform...	[more]
XP_013592193.1	2.800e-24	26.76	PREDICTED: pre-mRNA-processing protein 40A isoform...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL142	nonsL142	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR006	ncniR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR063	ngnoR063	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001410	NSK001410	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO15G01960.1	NO15G01960.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629983	gene_4746	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100067g19	gene8040	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO15G01960.1	NO15G01960.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO15G01960 ID=NO15G01960|Name=NO15G01960|organism=Nannochloropsis oceanica|type=gene|length=3773bp
ATGGCCCTAACCGCCGCCGCCTTTTTGTCGGGTGTTACAGGCGGATTGCG
GATTGCCAACACCATCTGTAAATTGCGTGGTAGAGACGGAGGGAGGGAAG
GGAAGGATAGAATGAATGAAAAAGAAAGATACTTTCCTGGCGTGGTGGAC
GGCTGGAGGGGGAAACCACAGCCACGCTTCGGGAGCGAAAACTGTTTCAC
TCCGGTGTTGACAACCAAAAGTCCCAAGCAAGgtgcatgtgcagtgatta
tgccgtcaaaagagtcagaagaaaaattataggaggcatatgggcactca
aactttgaaggaaatgggtggggagccgaacaccaactccgccctgctgg
ccgagtgtgttgatgcatagcttcttctccatctctccttcacaacacac
cacagGCCCCACCACCACCATCCACACAACCACCCACAGGCCACACAGCG
CTCCAGGTGTGCCTGAAGTGTCTATTCGTTGGACGGAAGGAAGTGCCGGG
Ggtgaggagaaggcagacaacgcattattctctctacctgcatcatgatg
accaaccaccacaaccaaacaaaacacctttgcgatgccgcgcactcatg
ccttctttcttcctccttaaaaaacagTATTCATCCACCAAGTTGGTAAT
CGGGCGCAGCAGCGACAGGGGACAGGCGAGATGAACGGCAATCGGCCCTA
CGGTTTCCCTCATTCACAGGGCATgtaagtatatttgctctttctcttac
cctttgcccagctacgtgtgctgccgcacacactgacgcccccgcttccc
gtatttttcaaccacccgcgtcagccacagactgagagcagagcgccgga
tgcccgccctttatgaattcggtgtccatggtgatgtttacttgctcgtc
cttcctcctccctttttctccacacagccatcgttgctcccctagatttc
ctaactaatgcaccaaacacccatcctatcctcccctctctcttcgacag
GCCTCCCCCCATGATGATGGGTATGCCCCCCCACGGCTATCCCCCCCACC
AAGGCTTCGGCATGCTCCCTCCCCCCCGTCCTGGCTTCCCTCCCGGAGCA
GCCCTCCTCCCTCCCCCTACCATGGTAATTCCCGCCGGGGTCCCTCCAGG
CCCTCCCTCCATCCATCCCCCCGTCCTAGCTGCGCCCGTCGTTCCGCTCG
CCCCGGCGGAAGACCCTGCCAATTGGACGGACCACGCCGGGCAGGACGGG
AAGACTTACTACCACAACCGCGTTACCAAAGTCAGTACCTACGATAAACC
GGCCTGCTTGAGACCTCCCCCCAAGCTTGCACCTATTCCCCCTGGGCCCC
CTTCTTCCCTTCCGCCCTGTCGCTGGAAGGAATACACGACCGCGGAGGGG
AAGACTTATTACAGTGACGGGAAAGAGTCTCTGTGGGTCGAGCCAGACGA
GTTGAAAGAACACAAGGCGAAACAAGCGAGGCGTGACGCAGGGGAGGACA
ATGAGGAGGAAGGGGTGGAGGTCGTACAGCATGTTGTACCAGCAGTGGCA
CTAGCGCAGCAGAAAGCAGCGGTGGAAACAATTGAGGTAATGGATGACGG
CAGTGATGATGAGGGGAAGAGAAGGAGGGAGGGAAGGGAAAGTGGAGCAG
CAGCACCGAAGAGTGCTTTGGCGGCAGTGGTGCTGAAGGCGACGGTAAAA
CAGGAGCCGCCAGACGATGATGATGGAAAGCATCAGACATTTAACACACA
TGAAGAGGCAGTGGCAGGTTTCAAGCGGTTGTTATATGTGAAGGGGGTGA
GCAGCACAGCGAAATGGGCCGACATGCCCAAATTGTTGAGTAAGGAGGCA
GTCTGGAGCATTTTAAAGACAGGGGAGAAGAAGCAGGCTTTTGCAGAATA
CCAGACCAAGAGGATGAAGGAGGAGAAGGAGGAGAAGCGGGCGAGGGTGA
GGAAGGCCCGCGATAGTTTTCTGAAGATGCTGGTGGAGTGCGTGGAGATT
GACTCCAAGTCGCGCTGGAAAGCTGCGGAAGAACTACTGTCAGAAGACGC
GAGGTTCAAGACGACAGACTTGAGTTTGCATGATAAAGAGGATGTTTTCA
ATGATTTTATTACGGAGTTGGCGAAGAAAGAAAAGGAGGAGAAAAGGTTG
AACAAGAAAGCTTTTGCGGCGTTGCTTCGGAAATACGCGGGTTTGCCGAG
GAAGGAGGGAAAGGAAAGGGCGGGAGAAAGTGAGGAAGAAAATGAAGAGA
AGGAGGAGAATGAGGAGGAGGATGGGTTAAGATTGGTGAGGGGGATGGAG
TGGAGGGAGGCGCAGGAGGTGTTAGACCGCAGGATAAGGGGGGAGGAGGA
ACGACGGTTGAGGGATTTGGTGGAGGAAGTGGATCAGAGGCATGCCTATG
AGGATGTGCTTGAAGAGCTAGAGAAGCAGCACCAGATGCGAAAGCGGGCG
GAACGGGAGGCGAGGCGGAAGGTGGAGGAGGAGAGGAGGGGCAGGTTTCG
ATTGGTTCTTGTCCGGCTGGCGGAGGAGGGGCTGCTTGATATGAGGAGTA
AATGGAAGAATCTCAAGTCGGTAATTGAACAGACGGAGGAGTATAAGATT
ATTATTGGTCAGGGGGGCGCGACCGCGGCGGAACTGTTTGAGAAGTTTGT
GGAGGAGCTGAAGGGGAGGTATGCGGAGGATAAGAGGAAGATGAGGGATT
ACTTGCCGAGGGCGGGAGCAGAGGTTACCCCCGAGTGGACCGAAGAGATG
TATGTGAGTGAGATAAGGAAGGCGTTGGGAGATGGTGATGAGGGAGAAGA
AGAGAAAGATGAGGATAGGGAGGTAGAGGACGAAGAGGTGGGGGGGGGGG
GGAGGAAGGAGTCGAGGAGATTAAAAGAGTTCAAGCAGATGTTGGCCGAG
AGGCCAAAGCATGTTTCTGCGGCATTTTCCGAGCTGCATAAACGGGCAGT
GGAGTTGAAAGAGGAGGAGGTGAAGAGGCGAGAAAAACGGTTGGGGAGAT
ATCGTGACTTGTTGCTGGAATATTACTGGCGTTCGGACCACGTAGATGTG
AGTTGGGAGGAGGCCCAGAGGGATTTGAAACGGCATTCGGCGTTTAATGC
CCTAGAAGCAGAGGAGACGAAAGCGCTCTTTGAAGAGCACATGGCGATGC
TGAAGGGGAAGATGGAGAGGAAGAAGAAGAGTCAGAAGGAGCTGTTGAAA
GAGAAGGAGAAAGGAAGGAAGGGTAAGGAGAACGAGAAGAAGCAGAAGGA
AAGTGGAGCGAAGAAGAAAGGTAGCAATAGTAGCAGCAGTAAGAAGAAGC
GTGATGAAAGCAGCAGTGGCAGCAGCAGCAGCAGCAGCAGCAGTGGTAGC
AGCAGTGAGCCATCCTCGTCCTCATCCTCGTCTTCTTCGTCTTCGTCGTC
TGATTATTCGTCCTCGTCGGACTCGGAGGACTCCCAGTATGGAGGAGGCA
AGGGCGAGCTCAAGAAGCCCGCGAGCAGCTCTAGTACCACGCACGGCAAT
ACTATCGGCGGTAAGAGCAAGAAGGAGAAGGCGGTGTCCAAGAAAAAGGA
CCCGAAGGGGAAGGAGAAGGAGAAGAAGCGGAAGCGCAAGGACTCTGGGG
CCGAAGAGGTGGATCGAGACAGTCGGCCACGTAGCCGCAGTCGAAGCCGG
GGAGGACGAGGGAGAGATCTACCCCGGTCGAGATCCCACAGCGAGGAGCG
TGAGGCTAAGCGGAAGAAGAGGTCAGTCCCTGCCCAGTCGTCGCGAGTGC
GAAGTGGAAGCCGGTCTGACTGA

protein sequence of NO15G01960.1

>NO15G01960.1-protein ID=NO15G01960.1-protein|Name=NO15G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1066bp
MALTAAAFLSGVTGGLRIANTICKLRGRDGGREGKDRMNEKERYFPGVVD
GWRGKPQPRFGSENCFTPVLTTKSPKQGPTTTIHTTTHRPHSAPGVPEVS
IRWTEGSAGVFIHQVGNRAQQRQGTGEMNGNRPYGFPHSQGMPPPMMMGM
PPHGYPPHQGFGMLPPPRPGFPPGAALLPPPTMVIPAGVPPGPPSIHPPV
LAAPVVPLAPAEDPANWTDHAGQDGKTYYHNRVTKVSTYDKPACLRPPPK
LAPIPPGPPSSLPPCRWKEYTTAEGKTYYSDGKESLWVEPDELKEHKAKQ
ARRDAGEDNEEEGVEVVQHVVPAVALAQQKAAVETIEVMDDGSDDEGKRR
REGRESGAAAPKSALAAVVLKATVKQEPPDDDDGKHQTFNTHEEAVAGFK
RLLYVKGVSSTAKWADMPKLLSKEAVWSILKTGEKKQAFAEYQTKRMKEE
KEEKRARVRKARDSFLKMLVECVEIDSKSRWKAAEELLSEDARFKTTDLS
LHDKEDVFNDFITELAKKEKEEKRLNKKAFAALLRKYAGLPRKEGKERAG
ESEEENEEKEENEEEDGLRLVRGMEWREAQEVLDRRIRGEEERRLRDLVE
EVDQRHAYEDVLEELEKQHQMRKRAEREARRKVEEERRGRFRLVLVRLAE
EGLLDMRSKWKNLKSVIEQTEEYKIIIGQGGATAAELFEKFVEELKGRYA
EDKRKMRDYLPRAGAEVTPEWTEEMYVSEIRKALGDGDEGEEEKDEDREV
EDEEVGGGGRKESRRLKEFKQMLAERPKHVSAAFSELHKRAVELKEEEVK
RREKRLGRYRDLLLEYYWRSDHVDVSWEEAQRDLKRHSAFNALEAEETKA
LFEEHMAMLKGKMERKKKSQKELLKEKEKGRKGKENEKKQKESGAKKKGS
NSSSSKKKRDESSSGSSSSSSSSGSSSEPSSSSSSSSSSSSSDYSSSSDS
EDSQYGGGKGELKKPASSSSTTHGNTIGGKSKKEKAVSKKKDPKGKEKEK
KRKRKDSGAEEVDRDSRPRSRSRSRGGRGRDLPRSRSHSEEREAKRKKRS
VPAQSSRVRSGSRSD*

Synonyms

Publications