NO15G01860, NO15G01860 (gene) Nannochloropsis oceanica

Overview
NameNO15G01860
Unique NameNO15G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length830
Alignment locationchr15:525574..526403 -

Link to JBrowse

Properties
Property NameValue
DescriptionUDENN
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:525574..526403 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037516Tripartite_DENN
IPR001194DENN_dom
Homology
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BLAST of NO15G01860 vs. NCBI_GenBank
Match: EWM22387.1 (uDENN [Nannochloropsis gaditana])

HSP 1 Score: 285.0 bits (728), Expect = 2.100e-73
Identity = 161/263 (61.22%), Postives = 184/263 (69.96%), Query Frame = 0 
Query:    1 MDLDYEAPFQCLSLDNVLKIFTLLLVEERLLFISSSTSLLTDVTETILTFLFPFKW---------------------------------------LSDSLFVVDLDHDCIVDAEGKQDNIAIIQNLPLLETLREKLLMELERAAVTVKSAEALRERDSAFELPAVPGSDLEDGPANMPHLNPEVARDAFLVFMCELLGIYIRFFNSQEGNNRSADGGTIGDTTHNGVFGAFDVSGFVASADKTAKPLLDKIVLTQMFAALVQQ 225
            MDLDYEAPF+CLSLDNVLKIF LLL+EERLLF+SSSTSLLT+VTETILT LFP +W                                       LSD LFVVDLDHDCI+DAE K D    ++N+P+LE LREKL  EL+R  VTVKSAEALRE DSAFELPAVPGS +EDGPA    LN ++ RDAFLVFMCELLG Y R+FNSQ+      D     D  HNGVFGAFDVSGF+A+A+KT K LL++++LTQMFAALVQQ
Sbjct:  521 MDLDYEAPFRCLSLDNVLKIFVLLLMEERLLFMSSSTSLLTEVTETILTLLFPLEWTSCYIPRLPNKLTEILDAPGSFLIGIYIEGTTDSWVLPQLSDPLFVVDLDHDCIIDAENK-DYTTAMENMPILEALREKLRTELDRTGVTVKSAEALREGDSAFELPAVPGSQVEDGPAMKLELNVDIVRDAFLVFMCELLGSYTRYFNSQQAQLDDTDA---CDMAHNGVFGAFDVSGFLATAEKTTKALLERVLLTQMFAALVQQ 779
The following BLAST results are available for this feature:
BLAST of NO15G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22387.12.100e-7361.22uDENN [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL142nonsL142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01860.1NO15G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587693gene_4736Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01860.1NO15G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01860 ID=NO15G01860|Name=NO15G01860|organism=Nannochloropsis oceanica|type=gene|length=830bp
ATGGACCTGGACTACGAGGCGCCATTCCAATGTCTAAGCTTGGACAATGT
GCTTAAAATCTTTACTTTGCTATTGGTGGAGGAGCGGCTCCTGTTTATCT
CGTCCTCGACGTCATTGCTGACAGATGTCACCGAGACCATCCTGACCTTT
CTGTTTCCCTTCAAGTGGgtgacatccctcgcctttctgacaagctgata
gagattctggaggcaccagactccttcttgatcggaatctataccgaggg
ctccacggactcttgggtcctaccccagCTTTCAGACTCCCTCTTTGTGG
TAGACTTGGATCACGACTGTATCGTGGACGCAGAGGGCAAGCAAGACAAT
ATTGCAATAATACAAAACTTGCCCTTATTGGAGACCTTGCGCGAGAAGCT
ACTGATGGAGTTGGAGCGCGCTGCAGTCACAGTTAAGTCGGCCGAGGCTC
TGCGCGAACGGGATTCCGCGTTTGAATTGCCGGCGGTGCCTGGGTCGGAC
CTAGAGGACGGACCGGCGAACATGCCTCATCTGAATCCGGAAGTTGCTCG
GGACGCTTTCTTAGTGTTCATGTGCGAACTGTTGGGAATCTACATCAGAT
TTTTCAACTCACAGGAAGGAAACAATCGGAGCGCGGACGGAGGCACGATT
GGGGATACAACACACAATGGCGTATTTGGCGCATTTGACGTCTCGGGTTT
TGTCGCGTCGGCGGACAAGACCGCTAAGCCGTTATTGGACAAGATAGTCT
TGACGCAGATGTTTGCGGCTTTGGTTCAGCAGCTTTGGTTCAGCAGCGCA
CAGAGCACAGTCATGCGGTGGACCGGTTGA
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protein sequence of NO15G01860.1

>NO15G01860.1-protein ID=NO15G01860.1-protein|Name=NO15G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MDLDYEAPFQCLSLDNVLKIFTLLLVEERLLFISSSTSLLTDVTETILTF
LFPFKWLSDSLFVVDLDHDCIVDAEGKQDNIAIIQNLPLLETLREKLLME
LERAAVTVKSAEALRERDSAFELPAVPGSDLEDGPANMPHLNPEVARDAF
LVFMCELLGIYIRFFNSQEGNNRSADGGTIGDTTHNGVFGAFDVSGFVAS
ADKTAKPLLDKIVLTQMFAALVQQLWFSSAQSTVMRWTG*
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Synonyms
Publications