NO15G01860.1, NO15G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01860.1
Unique NameNO15G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length720
Alignment locationchr15:525574..526403 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:525574..526403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01860.1 vs.
Match: EWM22387.1 (uDENN [Nannochloropsis gaditana])

HSP 1 Score: 285.0 bits (728), Expect = 2.100e-73
Identity = 161/263 (61.22%), Postives = 184/263 (69.96%), Query Frame = 0 
Query:    1 MDLDYEAPFQCLSLDNVLKIFTLLLVEERLLFISSSTSLLTDVTETILTFLFPFKW---------------------------------------LSDSLFVVDLDHDCIVDAEGKQDNIAIIQNLPLLETLREKLLMELERAAVTVKSAEALRERDSAFELPAVPGSDLEDGPANMPHLNPEVARDAFLVFMCELLGIYIRFFNSQEGNNRSADGGTIGDTTHNGVFGAFDVSGFVASADKTAKPLLDKIVLTQMFAALVQQ 225
            MDLDYEAPF+CLSLDNVLKIF LLL+EERLLF+SSSTSLLT+VTETILT LFP +W                                       LSD LFVVDLDHDCI+DAE K D    ++N+P+LE LREKL  EL+R  VTVKSAEALRE DSAFELPAVPGS +EDGPA    LN ++ RDAFLVFMCELLG Y R+FNSQ+      D     D  HNGVFGAFDVSGF+A+A+KT K LL++++LTQMFAALVQQ
Sbjct:  521 MDLDYEAPFRCLSLDNVLKIFVLLLMEERLLFMSSSTSLLTEVTETILTLLFPLEWTSCYIPRLPNKLTEILDAPGSFLIGIYIEGTTDSWVLPQLSDPLFVVDLDHDCIIDAENK-DYTTAMENMPILEALREKLRTELDRTGVTVKSAEALREGDSAFELPAVPGSQVEDGPAMKLELNVDIVRDAFLVFMCELLGSYTRYFNSQQAQLDDTDA---CDMAHNGVFGAFDVSGFLATAEKTTKALLERVLLTQMFAALVQQ 779
The following BLAST results are available for this feature:
BLAST of NO15G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22387.12.100e-7361.22uDENN [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01860NO15G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01860.1NO15G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01860.1.cds1NO15G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01860.1.cds2NO15G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01860.1 ID=NO15G01860.1|Name=NO15G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGGACCTGGACTACGAGGCGCCATTCCAATGTCTAAGCTTGGACAATGT
GCTTAAAATCTTTACTTTGCTATTGGTGGAGGAGCGGCTCCTGTTTATCT
CGTCCTCGACGTCATTGCTGACAGATGTCACCGAGACCATCCTGACCTTT
CTGTTTCCCTTCAAGTGGCTTTCAGACTCCCTCTTTGTGGTAGACTTGGA
TCACGACTGTATCGTGGACGCAGAGGGCAAGCAAGACAATATTGCAATAA
TACAAAACTTGCCCTTATTGGAGACCTTGCGCGAGAAGCTACTGATGGAG
TTGGAGCGCGCTGCAGTCACAGTTAAGTCGGCCGAGGCTCTGCGCGAACG
GGATTCCGCGTTTGAATTGCCGGCGGTGCCTGGGTCGGACCTAGAGGACG
GACCGGCGAACATGCCTCATCTGAATCCGGAAGTTGCTCGGGACGCTTTC
TTAGTGTTCATGTGCGAACTGTTGGGAATCTACATCAGATTTTTCAACTC
ACAGGAAGGAAACAATCGGAGCGCGGACGGAGGCACGATTGGGGATACAA
CACACAATGGCGTATTTGGCGCATTTGACGTCTCGGGTTTTGTCGCGTCG
GCGGACAAGACCGCTAAGCCGTTATTGGACAAGATAGTCTTGACGCAGAT
GTTTGCGGCTTTGGTTCAGCAGCTTTGGTTCAGCAGCGCACAGAGCACAG
TCATGCGGTGGACCGGTTGA
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protein sequence of NO15G01860.1

>NO15G01860.1-protein ID=NO15G01860.1-protein|Name=NO15G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MDLDYEAPFQCLSLDNVLKIFTLLLVEERLLFISSSTSLLTDVTETILTF
LFPFKWLSDSLFVVDLDHDCIVDAEGKQDNIAIIQNLPLLETLREKLLME
LERAAVTVKSAEALRERDSAFELPAVPGSDLEDGPANMPHLNPEVARDAF
LVFMCELLGIYIRFFNSQEGNNRSADGGTIGDTTHNGVFGAFDVSGFVAS
ADKTAKPLLDKIVLTQMFAALVQQLWFSSAQSTVMRWTG*
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mRNA from alignment at chr15:525574..526403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01860.1 ID=NO15G01860.1|Name=NO15G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=830bp|location=Sequence derived from alignment at chr15:525574..526403- (Nannochloropsis oceanica)
ATGGACCTGGACTACGAGGCGCCATTCCAATGTCTAAGCTTGGACAATGT
GCTTAAAATCTTTACTTTGCTATTGGTGGAGGAGCGGCTCCTGTTTATCT
CGTCCTCGACGTCATTGCTGACAGATGTCACCGAGACCATCCTGACCTTT
CTGTTTCCCTTCAAGTGGGTGACATCCCTCGCCTTTCTGACAAGCTGATA
GAGATTCTGGAGGCACCAGACTCCTTCTTGATCGGAATCTATACCGAGGG
CTCCACGGACTCTTGGGTCCTACCCCAGCTTTCAGACTCCCTCTTTGTGG
TAGACTTGGATCACGACTGTATCGTGGACGCAGAGGGCAAGCAAGACAAT
ATTGCAATAATACAAAACTTGCCCTTATTGGAGACCTTGCGCGAGAAGCT
ACTGATGGAGTTGGAGCGCGCTGCAGTCACAGTTAAGTCGGCCGAGGCTC
TGCGCGAACGGGATTCCGCGTTTGAATTGCCGGCGGTGCCTGGGTCGGAC
CTAGAGGACGGACCGGCGAACATGCCTCATCTGAATCCGGAAGTTGCTCG
GGACGCTTTCTTAGTGTTCATGTGCGAACTGTTGGGAATCTACATCAGAT
TTTTCAACTCACAGGAAGGAAACAATCGGAGCGCGGACGGAGGCACGATT
GGGGATACAACACACAATGGCGTATTTGGCGCATTTGACGTCTCGGGTTT
TGTCGCGTCGGCGGACAAGACCGCTAAGCCGTTATTGGACAAGATAGTCT
TGACGCAGATGTTTGCGGCTTTGGTTCAGCAGCTTTGGTTCAGCAGCGCA
CAGAGCACAGTCATGCGGTGGACCGGTTGA
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Coding sequence (CDS) from alignment at chr15:525574..526403-

>NO15G01860.1 ID=NO15G01860.1|Name=NO15G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr15:525574..526403- (Nannochloropsis oceanica)
ATGGACCTGGACTACGAGGCGCCATTCCAATGTCTAAGCTTGGACAATGT
GCTTAAAATCTTTACTTTGCTATTGGTGGAGGAGCGGCTCCTGTTTATCT
CGTCCTCGACGTCATTGCTGACAGATGTCACCGAGACCATCCTGACCTTT
CTGTTTCCCTTCAAGTGGCTTTCAGACTCCCTCTTTGTGGTAGACTTGGA
TCACGACTGTATCGTGGACGCAGAGGGCAAGCAAGACAATATTGCAATAA
TACAAAACTTGCCCTTATTGGAGACCTTGCGCGAGAAGCTACTGATGGAG
TTGGAGCGCGCTGCAGTCACAGTTAAGTCGGCCGAGGCTCTGCGCGAACG
GGATTCCGCGTTTGAATTGCCGGCGGTGCCTGGGTCGGACCTAGAGGACG
GACCGGCGAACATGCCTCATCTGAATCCGGAAGTTGCTCGGGACGCTTTC
TTAGTGTTCATGTGCGAACTGTTGGGAATCTACATCAGATTTTTCAACTC
ACAGGAAGGAAACAATCGGAGCGCGGACGGAGGCACGATTGGGGATACAA
CACACAATGGCGTATTTGGCGCATTTGACGTCTCGGGTTTTGTCGCGTCG
GCGGACAAGACCGCTAAGCCGTTATTGGACAAGATAGTCTTGACGCAGAT
GTTTGCGGCTTTGGTTCAGCAGCTTTGGTTCAGCAGCGCACAGAGCACAG
TCATGCGGTGGACCGGTTGA
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Synonyms
Publications