NO15G01750, NO15G01750 (gene) Nannochloropsis oceanica

Overview
NameNO15G01750
Unique NameNO15G01750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1136
Alignment locationchr15:494272..495616 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:494272..495616 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013240DNA-dir_RNA_pol1_su_RPA34
Vocabulary: Biological Process
TermDefinition
GO:0006360transcription by RNA polymerase I
Homology
[Close]
BLAST of NO15G01750 vs. NCBI_GenBank
Match: EWM22414.1 (hypothetical protein Naga_100011g95 [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 3.600e-32
Identity = 93/204 (45.59%), Postives = 119/204 (58.33%), Query Frame = 0 
Query:    5 DRTLVPVRTALTMEELTANEDLELWLFRMPLDFNAEELAKKKLKINEAAEAGVVLQVTDVQRARRELDEDDQDEDGMPCGEASGD--------SYEVLLGNASEIGSYQVLLQSSRDAPGVLRVAPSINRHFVVAQFP--------PNTTCAATDGESIDGRQSSTMTVARP-----SRIVVPYTHVPQIQGLEARFKMPGAGS 188
            DRTL+PVRT  T+EEL   ED ELWLFR PLDFNAE L K KLKI+E A  G VL         R + ED + +     G+   D        SYEVLLG+ +E  +Y+VLLQ+  D PGVL++AP   RH VVAQ P        P  +   ++G   D +  + + + R      +RIVVPY+HVPQ++GL+ RFK  GAGS
Sbjct:    3 DRTLIPVRTIFTIEELLEAEDAELWLFRTPLDFNAEYLVKSKLKIDEDAVIGSVL---------RAIKEDGEVDGHSGTGDVLADSLSRELGPSYEVLLGDPAESKAYRVLLQAGEDDPGVLKIAPPFTRHIVVAQRPFEAGHLSSPGPSTPPSEGNE-DLQSDTELALKRKARHDIARIVVPYSHVPQVEGLQVRFKPLGAGS 196
The following BLAST results are available for this feature:
BLAST of NO15G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22414.13.600e-3245.59hypothetical protein Naga_100011g95 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100011g95gene8023Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01750.3NO15G01750.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G01750.2NO15G01750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G01750.1NO15G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01750.3NO15G01750.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G01750.2NO15G01750.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G01750.1NO15G01750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01750 ID=NO15G01750|Name=NO15G01750|organism=Nannochloropsis oceanica|type=gene|length=1136bp
ACAGACGTTGCCTAACAGCTTTTTGCTCAGACCATGAGCACGCACGACCG
AACATTGGTCCCTGTGAGgtaagtgacctcctgcctccagccatgcgttt
ggctacgggagacctaggacggaggtgtgcttctttatttccatctatac
tcaccttactgcacacataaacatacacatacactaccacacacagGACG
GCGCTGACAATGGAGGAGCTAACGGCCAATGAGGACTTAGAGCTGTGGCT
TTTTCGCATGCCCCTGGATgtaagtcgtcccacccctaccattcgacctc
ctacccctccctccgtctaaattcacgcccctctctcacctcccaccacc
ataagTTCAATGCTGAGGAGCTTGCTAAGAAGAAGCTCAAAATAAATGAA
GCCGCAGAGGCAGGAGTCGTTCTGCAAGTCACTGACGTCCAGAGAGCAAG
GAGGGAGCTGGATGAGGACGACCAGGATGAGGATGGTATGCCATGCGGAG
AAGCAAGCGGGGACAGTTACGAGGTGCTTCTGGGCAACGCCTCGGAAATC
GGTTCTTATCAAGTGCTACTTCAATCATCAAGGGACGCACCAGGGGTGCT
GCGGGTTGCTCCGTCTATCAACAGGCACTTCGTCGTGGCCCAATTCCCTC
CCAATACTACCTGCGCTGCTACTGATGGCGAAAGTATAGATGGGAGGCAG
TCTTCTACTATGACAGTCGCACGTCCGTCTCGGATAGTGGTGCCATACAC
ACACGTTCCACAAATTCAAGGTTTGGAGGCGCGATTTAAAATGCCAGGAG
CAGGCAGCGCCCCCCCGCCCCCCCGGTGGTGGAAGGAGGGTGTAAGGGAG
GTGGAGAAGGAAGAGAAGGATGACGGGGAAAAAGCGAAGGAGAAGAAGAG
AATAGCAAGGGAGGGAAAGAAGGAGAAGGGGAAGAAAGAGAAGAAGAAGA
AGAAGAGGAAGCATCGGGCGAGTGATGAGGGTTTTTGGAAGAAGGAAGGG
AAGGGAAAGGAGGAGGACACGTCGTCGCCTGAGAAGAAGGCGAATAAAGC
CCACAAACAGAAGAAGCCATCAAGACGGCAAAGTGTGTAAACACTTATCC
TTCAGTAAATGGAAAAAAGCAAATCAAAATGTATCT
back to top

protein sequence of NO15G01750.3

>NO15G01750.3-protein ID=NO15G01750.3-protein|Name=NO15G01750.3|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MEELTANEDLELWLFRMPLDFNAEELAKKKLKINEAAEAGVVLQVTDVQR
ARRELDEDDQDEDGMPCGEASGDSYEVLLGNASEIGSYQVLLQSSRDAPG
VLRVAPSINRHFVVAQFPPNTTCAATDGESIDGRQSSTMTVARPSRIVVP
YTHVPQIQGLEARFKMPGAGSAPPPPRWWKEGVREVEKEEKDDGEKAKEK
KRIAREGKKEKGKKEKKKKKRKHRASDEGFWKKEGKGKEEDTSSPEKKAN
KAHKQKKPSRRQSV*
back to top

protein sequence of NO15G01750.2

>NO15G01750.2-protein ID=NO15G01750.2-protein|Name=NO15G01750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MPCGEASGDSYEVLLGNASEIGSYQVLLQSSRDAPGVLRVAPSINRHFVV
AQFPPNTTCAATDGESIDGRQSSTMTVARPSRIVVPYTHVPQIQGLEARF
KMPGAGSAPPPPRWWKEGVREVEKEEKDDGEKAKEKKRIAREGKKEKGKK
EKKKKKRKHRASDEGFWKKEGKGKEEDTSSPEKKANKAHKQKKPSRRQSV
*
back to top

protein sequence of NO15G01750.1

>NO15G01750.1-protein ID=NO15G01750.1-protein|Name=NO15G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MSTHDRTLVPVRTALTMEELTANEDLELWLFRMPLDFNAEELAKKKLKIN
EAAEAGVVLQVTDVQRARRELDEDDQDEDGMPCGEASGDSYEVLLGNASE
IGSYQVLLQSSRDAPGVLRVAPSINRHFVVAQFPPNTTCAATDGESIDGR
QSSTMTVARPSRIVVPYTHVPQIQGLEARFKMPGAGSAPPPPRWWKEGVR
EVEKEEKDDGEKAKEKKRIAREGKKEKGKKEKKKKKRKHRASDEGFWKKE
GKGKEEDTSSPEKKANKAHKQKKPSRRQSV*
back to top
Synonyms
Publications