NO15G01750.3, NO15G01750.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01750.3
Unique NameNO15G01750.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1259
Alignment locationchr15:494272..495616 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:494272..495616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G01750.3 vs.
Match: EWM22414.1 (hypothetical protein Naga_100011g95 [Nannochloropsis gaditana])

HSP 1 Score: 140.6 bits (353), Expect = 7.100e-30
Identity = 101/231 (43.72%), Postives = 128/231 (55.41%), Query Frame = 0 
Query:    1 MEELTANEDLELWLFRMPLDFNAEELAKKKLKINEAAEAGVVLQVTDVQRARRELDEDDQDEDGMPCGEASGDS--------YEVLLGNASEIGSYQVLLQSSRDAPGVLRVAPSINRHFVVAQFP--------PNTTCAATDGESIDGRQSSTMTVARPSR-----IVVPYTHVPQIQGLEARFKMPGAGSAPPPPRWWKEGVREVEKEEKDDGEKAKEKKRIAREGKKE 211
            +EEL   ED ELWLFR PLDFNAE L K KLKI+E A  G VL         R + ED + +     G+   DS        YEVLLG+ +E  +Y+VLLQ+  D PGVL++AP   RH VVAQ P        P  +   ++G   D +  + + + R +R     IVVPY+HVPQ++GL+ RFK  GAGS PPPP W KEG  E EK  K  G     + R A   K+E
Sbjct:   15 IEELLEAEDAELWLFRTPLDFNAEYLVKSKLKIDEDAVIGSVL---------RAIKEDGEVDGHSGTGDVLADSLSRELGPSYEVLLGDPAESKAYRVLLQAGEDDPGVLKIAPPFTRHIVVAQRPFEAGHLSSPGPSTPPSEGNE-DLQSDTELALKRKARHDIARIVVPYSHVPQVEGLQVRFKPLGAGSVPPPPLWSKEGEGE-EKRGKSRGSPYLGRDRKAGLTKQE 234
The following BLAST results are available for this feature:
BLAST of NO15G01750.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22414.17.100e-3043.72hypothetical protein Naga_100011g95 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01750NO15G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01750.3NO15G01750.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01750.3.cds1NO15G01750.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01750.3.cds2NO15G01750.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01750.3 ID=NO15G01750.3|Name=NO15G01750.3|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp
TGCGAGGCTGTCTTATCTGCCTGTGCGTGGTTTGTGTGCGTAAGTGCCCT
GAGACTGTGTGTATTGAGAGATTGTGTATCTAGGCAAGCAAGCAGCGGGG
TGGTGTGGTTATCGAGCCCCACTCGCTCATCACTGCCCCAGACCCAATGC
AGCAAGCAAGCAAGCACTCCTCTTAACCCACAAAACTCAATCACCACTTC
CTCAATTACACAGACGTTGCCTAACAGCTTTTTGCTCAGACCATGAGCAC
GCACGACCGAACATTGGTCCCTGTGAGGTAAGTGACCTCCTGCCTCCAGC
CATGCGTTTGGCTACGGGAGACCTAGGACGGAGGTGTGCTTCTTTATTTC
CATCTATACTCACCTTACTGCACACATAAACATACACATACACTACCACA
CACAGGACGGCGCTGACAATGGAGGAGCTAACGGCCAATGAGGACTTAGA
GCTGTGGCTTTTTCGCATGCCCCTGGATTTCAATGCTGAGGAGCTTGCTA
AGAAGAAGCTCAAAATAAATGAAGCCGCAGAGGCAGGAGTCGTTCTGCAA
GTCACTGACGTCCAGAGAGCAAGGAGGGAGCTGGATGAGGACGACCAGGA
TGAGGATGGTATGCCATGCGGAGAAGCAAGCGGGGACAGTTACGAGGTGC
TTCTGGGCAACGCCTCGGAAATCGGTTCTTATCAAGTGCTACTTCAATCA
TCAAGGGACGCACCAGGGGTGCTGCGGGTTGCTCCGTCTATCAACAGGCA
CTTCGTCGTGGCCCAATTCCCTCCCAATACTACCTGCGCTGCTACTGATG
GCGAAAGTATAGATGGGAGGCAGTCTTCTACTATGACAGTCGCACGTCCG
TCTCGGATAGTGGTGCCATACACACACGTTCCACAAATTCAAGGTTTGGA
GGCGCGATTTAAAATGCCAGGAGCAGGCAGCGCCCCCCCGCCCCCCCGGT
GGTGGAAGGAGGGTGTAAGGGAGGTGGAGAAGGAAGAGAAGGATGACGGG
GAAAAAGCGAAGGAGAAGAAGAGAATAGCAAGGGAGGGAAAGAAGGAGAA
GGGGAAGAAAGAGAAGAAGAAGAAGAAGAGGAAGCATCGGGCGAGTGATG
AGGGTTTTTGGAAGAAGGAAGGGAAGGGAAAGGAGGAGGACACGTCGTCG
CCTGAGAAGAAGGCGAATAAAGCCCACAAACAGAAGAAGCCATCAAGACG
GCAAAGTGTGTAAACACTTATCCTTCAGTAAATGGAAAAAAGCAAATCAA
AATGTATCT
back to top

protein sequence of NO15G01750.3

>NO15G01750.3-protein ID=NO15G01750.3-protein|Name=NO15G01750.3|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MEELTANEDLELWLFRMPLDFNAEELAKKKLKINEAAEAGVVLQVTDVQR
ARRELDEDDQDEDGMPCGEASGDSYEVLLGNASEIGSYQVLLQSSRDAPG
VLRVAPSINRHFVVAQFPPNTTCAATDGESIDGRQSSTMTVARPSRIVVP
YTHVPQIQGLEARFKMPGAGSAPPPPRWWKEGVREVEKEEKDDGEKAKEK
KRIAREGKKEKGKKEKKKKKRKHRASDEGFWKKEGKGKEEDTSSPEKKAN
KAHKQKKPSRRQSV*
back to top

mRNA from alignment at chr15:494272..495616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01750.3 ID=NO15G01750.3|Name=NO15G01750.3|organism=Nannochloropsis oceanica|type=mRNA|length=1345bp|location=Sequence derived from alignment at chr15:494272..495616- (Nannochloropsis oceanica)
TGCGAGGCTGTCTTATCTGCCTGTGCGTGGTTTGTGTGCGTAAGTGCCCT
GAGACTGTGTGTATTGAGAGATTGTGTATCTAGGCAAGCAAGCAGCGGGG
TGGTGTGGTTATCGAGCCCCACTCGCTCATCACTGCCCCAGACCCAATGC
AGCAAGCAAGCAAGCACTCCTCTTAACCCACAAAACTCAATCACCACTTC
CTCAATTACACAGACGTTGCCTAACAGCTTTTTGCTCAGACCATGAGCAC
GCACGACCGAACATTGGTCCCTGTGAGGTAAGTGACCTCCTGCCTCCAGC
CATGCGTTTGGCTACGGGAGACCTAGGACGGAGGTGTGCTTCTTTATTTC
CATCTATACTCACCTTACTGCACACATAAACATACACATACACTACCACA
CACAGGACGGCGCTGACAATGGAGGAGCTAACGGCCAATGAGGACTTAGA
GCTGTGGCTTTTTCGCATGCCCCTGGATGTAAGTCGTCCCACCCCTACCA
TTCGACCTCCTACCCCTCCCTCCGTCTAAATTCACGCCCCTCTCTCACCT
CCCACCACCATAAGTTCAATGCTGAGGAGCTTGCTAAGAAGAAGCTCAAA
ATAAATGAAGCCGCAGAGGCAGGAGTCGTTCTGCAAGTCACTGACGTCCA
GAGAGCAAGGAGGGAGCTGGATGAGGACGACCAGGATGAGGATGGTATGC
CATGCGGAGAAGCAAGCGGGGACAGTTACGAGGTGCTTCTGGGCAACGCC
TCGGAAATCGGTTCTTATCAAGTGCTACTTCAATCATCAAGGGACGCACC
AGGGGTGCTGCGGGTTGCTCCGTCTATCAACAGGCACTTCGTCGTGGCCC
AATTCCCTCCCAATACTACCTGCGCTGCTACTGATGGCGAAAGTATAGAT
GGGAGGCAGTCTTCTACTATGACAGTCGCACGTCCGTCTCGGATAGTGGT
GCCATACACACACGTTCCACAAATTCAAGGTTTGGAGGCGCGATTTAAAA
TGCCAGGAGCAGGCAGCGCCCCCCCGCCCCCCCGGTGGTGGAAGGAGGGT
GTAAGGGAGGTGGAGAAGGAAGAGAAGGATGACGGGGAAAAAGCGAAGGA
GAAGAAGAGAATAGCAAGGGAGGGAAAGAAGGAGAAGGGGAAGAAAGAGA
AGAAGAAGAAGAAGAGGAAGCATCGGGCGAGTGATGAGGGTTTTTGGAAG
AAGGAAGGGAAGGGAAAGGAGGAGGACACGTCGTCGCCTGAGAAGAAGGC
GAATAAAGCCCACAAACAGAAGAAGCCATCAAGACGGCAAAGTGTGTAAA
CACTTATCCTTCAGTAAATGGAAAAAAGCAAATCAAAATGTATCT
back to top

Coding sequence (CDS) from alignment at chr15:494272..495616-

>NO15G01750.3 ID=NO15G01750.3|Name=NO15G01750.3|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr15:494272..495616- (Nannochloropsis oceanica)
ATGGAGGAGCTAACGGCCAATGAGGACTTAGAGCTGTGGCTTTTTCGCAT
GCCCCTGGATTTCAATGCTGAGGAGCTTGCTAAGAAGAAGCTCAAAATAA
ATGAAGCCGCAGAGGCAGGAGTCGTTCTGCAAGTCACTGACGTCCAGAGA
GCAAGGAGGGAGCTGGATGAGGACGACCAGGATGAGGATGGTATGCCATG
CGGAGAAGCAAGCGGGGACAGTTACGAGGTGCTTCTGGGCAACGCCTCGG
AAATCGGTTCTTATCAAGTGCTACTTCAATCATCAAGGGACGCACCAGGG
GTGCTGCGGGTTGCTCCGTCTATCAACAGGCACTTCGTCGTGGCCCAATT
CCCTCCCAATACTACCTGCGCTGCTACTGATGGCGAAAGTATAGATGGGA
GGCAGTCTTCTACTATGACAGTCGCACGTCCGTCTCGGATAGTGGTGCCA
TACACACACGTTCCACAAATTCAAGGTTTGGAGGCGCGATTTAAAATGCC
AGGAGCAGGCAGCGCCCCCCCGCCCCCCCGGTGGTGGAAGGAGGGTGTAA
GGGAGGTGGAGAAGGAAGAGAAGGATGACGGGGAAAAAGCGAAGGAGAAG
AAGAGAATAGCAAGGGAGGGAAAGAAGGAGAAGGGGAAGAAAGAGAAGAA
GAAGAAGAAGAGGAAGCATCGGGCGAGTGATGAGGGTTTTTGGAAGAAGG
AAGGGAAGGGAAAGGAGGAGGACACGTCGTCGCCTGAGAAGAAGGCGAAT
AAAGCCCACAAACAGAAGAAGCCATCAAGACGGCAAAGTGTGTAA
back to top
Synonyms
Publications