NO15G01550, NO15G01550 (gene) Nannochloropsis oceanica

Overview
NameNO15G01550
Unique NameNO15G01550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2474
Alignment locationchr15:436511..438984 -

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Properties
Property NameValue
DescriptionRna polymerase sigma-e factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:436511..438984 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
GO:0006352DNA-templated transcription, initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR013324RNA_pol_sigma_r3_r4
IPR013325RNA_pol_sigma_r2
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
Homology
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BLAST of NO15G01550 vs. NCBI_GenBank
Match: EWM22422.1 (rna polymerase sigma-e factor [Nannochloropsis gaditana])

HSP 1 Score: 377.1 bits (967), Expect = 1.200e-100
Identity = 312/678 (46.02%), Postives = 382/678 (56.34%), Query Frame = 0 
Query:   40 KAPRPSAKGMFRSL---LLPVLLMLLVLPMPHAFVTRMRQDGCASRVPPVRSPAATFS---TWTL---LTDMPSSTSLGATRVIDTHASTSSSQEGQDKNATGMAASALKTAALEKQARIARRDARRRRKQLALLEEEGKDGYMTQRG--GSGYMLPALSSGSTSTINSKNSHSALMHRRELPSLPKGGGLDATTSSSSRPHTVDLYVPSADLEVMLFWAHKLETLPALSR-------RGSSSIPPL-PREHKQLLFLDKEKRLLALAQMVLGMEKLRREIADARRASPAAAAADAPVTSRELAVRLGLTTEEVEAFYKLGLRARSYILMSMHSLILSLARKYAGTFGVDQAELVQEGYRGAVQAVERYDGRKAGGAGATFRGFAYVYVMSAMITAARNELHLGAAPLGVRDPDLMRLGSGEKGEGREGGTGRGLLLPSRSVGEGTRARTRGALPVDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTPLVGRRRKVRPTRRMIRMRGPAHEAIME-LGSARRSPGRSGXXXXXXXXXXWGRRAELFGVDPEATRPAYELVDESTRTRDLNLFLKRAAAELPERDMQVLSLVYGLEGQVPMKKAQVAAKLGTSVAVVSKSEKRALNKLREMLNI 698
            KAP PS  GMFRSL    L V+L+ ++LP   AFV ++          P +S  A  S   TWT      +  S +SLGATRV D       +   QD+      A  +  A+  ++AR+AR+ ARRR++QL +   EG+ G   +RG   + YMLP+ +     T +          R  L +   G       +  SRPHTVDLYVPSADL+VML WA +L   PAL R        G SS+P L PR   QL++LDKE+RLLALAQMV+GMEK+R E+ +  +++P   A    +T+R LA RLGL+ EE  AFYKLGLRARSYIL+SMHSLI +LARKY  TFGVD+AELVQEGYRGA+QA+ERYD  KA   GATFR F+Y YVMSAMITAAR ELHL A P   R+   MRL  G +G G         LL              GALP  A G                                                     XXXXXXXXXXXXXXXX          ++ P RR+ RM GPA E I E +G+ ++  G  G           GRRAELFGVDPE TRPAYE+VDES R  +L +FL+RAA EL  +DM+VLSL+YGL+G  P+ + QVA KLG S AVVSKSE+RAL KLREMLNI
Sbjct:   32 KAPLPS-HGMFRSLNGPFLYVVLLHMLLPRGAAFVAQL----------PYQSHVACGSRPWTWTAAGRAWESASHSSLGATRVAD------ETVPWQDEGDHAAVARNITEASAGREARLARKAARRRQRQLRV---EGQGGAHEERGNVATRYMLPSPTEAGLRTRDGP--------RSRLGARGHGESAAPGLTPPSRPHTVDLYVPSADLDVMLDWADRLP--PALDRPGEAAGSGGGSSLPSLRPRAAHQLVWLDKEQRLLALAQMVMGMEKVRAEMVE--KSAPGEGARG--ITTRMLAARLGLSPEEAAAFYKLGLRARSYILVSMHSLIAALARKYGATFGVDEAELVQEGYRGAMQALERYDRGKAEATGATFRAFSYFYVMSAMITAARKELHLDATPSSTRNAASMRLPPGTQGRG-----DASFLLXXXXA---------GALPAAASG-----------------LGGSRPVSTTEIPPELLWKDVKAKEDDGEWKHGAEEXXXXXXXXXXXXXXXXXXXXXXXXXXRLGPMRRVTRM-GPAQEVIAEAVGAGKQGAGARGDLGVG------GRRAELFGVDPETTRPAYEIVDESKRAWELGMFLRRAAQELSPQDMEVLSLLYGLKGHSPLSRPQVARKLGLSTAVVSKSERRALKKLREMLNI 637
The following BLAST results are available for this feature:
BLAST of NO15G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22422.11.200e-10046.02rna polymerase sigma-e factor [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01550.1NO15G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587560gene_4699Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01550.1NO15G01550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01550 ID=NO15G01550|Name=NO15G01550|organism=Nannochloropsis oceanica|type=gene|length=2474bp
AACAGGCCCTCAACTTGAGCGACGACGTTCGTGCAGGTCACCGACACGCG
CAAGTGATTGCCATGGCGACAAGGGACGCCCGGCAGCCGCGTATCTGCAT
AAGAAGACCATGGGCAATACAAGCAGACACATTGCCAGCTGTAAATCCAC
CAGCACGGCTTCCGTGCCCTTCCCATGCAAAGGCACCACGTCCTTCTGCG
AAGGGGATGTTCCGGTCCCTGCTGCTGCCCGTCCTGCTCATGCTGCTGGT
ACTCCCTATGCCCCACGCGTTTGTCACAAGGATGCGGCAGGATGGCTGTG
CCTCGAGAGTACCGCCAGTACGGTCGCCAGCAGCGACCTTCTCCACCTGG
ACATTGCTGACTGACATGCCCTCCTCAACTTCGCTTGGCGCCACCCGCGT
TATCGATACCCACGCCTCAACGTCCTCCTCACAAGAAGGACAGGACAAAA
ATGCGACCGGCATGGCAGCCTCAGCCCTCAAGACAGCCGCATTAGAAAAG
CAAGCGAGAATAGCACGGCGCGATGCCCGCCGCCGACGCAAGCAACTGGC
GCTTCTAGAAGAGGAGGGTAAAGATGGTTACATGACGCAGCGTGGTGGTA
GTGGGTACATGCTTCCTGCCTTGAGCAGTGGCAGCACCAGCACCATTAAC
AGTAAAAATAGTCACAGTGCCCTAATGCACCGTCGCGAGTTGCCTTCTCT
TCCGAAAGGGGGAGGGCTGGATGCTACCACCTCGTCTTCCTCGCGTCCTC
ACACAGTGGATCTGTATGTGCCTTCTGCTGACTTAGAAGTGATGCTCTTC
TGGGCCCATAAGCTAGAGACCCTCCCTGCTTTGAGCAGGCGCGGCAGCAG
TAGTATCCCTCCTCTTCCTCGTGAGCATAAGCAGCTCCTCTTTCTCGACA
AGGAAAAGCGTTTGCTTGCCCTGGCCCAAATGGTTTTAGGTATGGAAAAG
CTCCGACGGGAAATAGCAGACGCTCGCCGTGCTAGTCCGGCTGCAGCTGC
TGCTGATGCCCCCGTGACCTCCCGGGAGCTGGCGGTGCGCTTGGGGTTGA
CAACGGAGGAGGTGGAGGCGTTTTATAAGTTGGGTTTACGAGCACGCAGT
TACATTCTAATGAGCATGCACTCACTCATTCTTTCGCTAGCGAGGAAATA
TGCAGGTACCTTTGGTGTGGATCAAGCTGAACTGGTTCAAGAAGGGTATA
GAGGAGCGGTGCAGGCGGTGGAGAGGTACGATGGCAGGAAGGCAGGAGGG
GCTGGGGCAACGTTTCGGGGATTTGCGTATGTGTATGTGATGAGTGCTAT
GATTACTGCTGCGAGAAATGAATTGCACCTGGGGGCAGCGCCCTTGGGAG
TGAGAGATCCAGATTTGATGAGGTTGGGTTCGGGGGAGAAGGGGGAGGGG
AGGGAGGGAGGGACAGGGAGGGGGCTGCTGTTGCCCTCCAGGAGTGTTGG
AGAGGGAACGAGAGCGAGGACGAGGGGGGCCTTGCCCGTGGATGCGGTCG
GGAGTGGAGAAGGGTGGAGAGGGAAGCAGCTGGCGCTAACGGCAGTGTCG
TCTGCAGCTGGAGCAGGAGTGGGTTTGTTGAGAGGAGAAAAGGAGGATGG
TGGCGGCGACGACCACGATTACGATTCTTGGGGAGACAATGACCGAGACG
AGGACCAAGAAGTGGTCGATGTGGACGAGGAGGAGGTGGCAGAGGCGGCT
CGTGGGCGCAAGCCTACCCCTCTGGTGGGACGACGACGGAAGGTGAGACC
GACGAGGAGGATGATAAGAATGAGGGGCCCGGCACATGAGGCGATTATGG
AGCTTGGGTCTGCTAGGAGGAGTCCAGGCCGATCTGGCGGCGGGGATGGC
AGCAGTAGTAGCAGTAGCTGGGGGAGGAGGGCGGAATTGTTTGGGGTGGA
CCCAGAGGCGACACGACCGGCATACGAGCTCGTCGATGAGAGCACACGGA
CGAGGGACTTGAATCTTTTCTTGAAACGAGCGGCGGCTGAATTGCCAGAG
AGGGATATGCAAGTGTTGAGTCTTGTGTATGGGTTGGAAGGGCAGGTGCC
GATGAAGAAAGCGCAAGTAGCAGCAAAGTTGGGCACGTCTGTGGCGGTGG
TGAGTAAAAGTGAGAAGCGGGCATTGAACAAGCTGAGAGAGATGTTGAAC
ATCAAAGAGGAGGTGTAGAAGGGGAAGGACAGAGGGAGAGAGGGGAGGAG
AGAAAATGACATGCAGTAGTCAATAACCTGTTTGATGACGATTGCCGCAC
AATCAAGTAGGCAGTCGGAAAACAGAAACATCGCGCTGGAACAAAGCAAC
GTGGAATGCGTTGAGGAAGAGAGAAGGACGGCGTGCATGTGTATAATTTT
ACACACATACAAGTAGGATTTTCTGATGCAGAATAAACAACATGTGTAGA
TAGGCAAAGCGAATAGTTTATTAAAAAGACGAAATCTCACCAAAATGTAA
GTGGTGCGTTCACATCACAGCGAG
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protein sequence of NO15G01550.1

>NO15G01550.1-protein ID=NO15G01550.1-protein|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp
MATRDARQPRICIRRPWAIQADTLPAVNPPARLPCPSHAKAPRPSAKGMF
RSLLLPVLLMLLVLPMPHAFVTRMRQDGCASRVPPVRSPAATFSTWTLLT
DMPSSTSLGATRVIDTHASTSSSQEGQDKNATGMAASALKTAALEKQARI
ARRDARRRRKQLALLEEEGKDGYMTQRGGSGYMLPALSSGSTSTINSKNS
HSALMHRRELPSLPKGGGLDATTSSSSRPHTVDLYVPSADLEVMLFWAHK
LETLPALSRRGSSSIPPLPREHKQLLFLDKEKRLLALAQMVLGMEKLRRE
IADARRASPAAAAADAPVTSRELAVRLGLTTEEVEAFYKLGLRARSYILM
SMHSLILSLARKYAGTFGVDQAELVQEGYRGAVQAVERYDGRKAGGAGAT
FRGFAYVYVMSAMITAARNELHLGAAPLGVRDPDLMRLGSGEKGEGREGG
TGRGLLLPSRSVGEGTRARTRGALPVDAVGSGEGWRGKQLALTAVSSAAG
AGVGLLRGEKEDGGGDDHDYDSWGDNDRDEDQEVVDVDEEEVAEAARGRK
PTPLVGRRRKVRPTRRMIRMRGPAHEAIMELGSARRSPGRSGGGDGSSSS
SSWGRRAELFGVDPEATRPAYELVDESTRTRDLNLFLKRAAAELPERDMQ
VLSLVYGLEGQVPMKKAQVAAKLGTSVAVVSKSEKRALNKLREMLNIKEE
V*
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Synonyms
Publications