NO15G01550.1, NO15G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01550.1
Unique NameNO15G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2474
Alignment locationchr15:436511..438984 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:436511..438984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO15G01550.1 vs.
Match: EWM22422.1 (rna polymerase sigma-e factor [Nannochloropsis gaditana])

HSP 1 Score: 414.5 bits (1064), Expect = 6.700e-112
Identity = 323/680 (47.50%), Postives = 399/680 (58.68%), Query Frame = 0
Query:   40 KAPRPSAKGMFRSL---LLPVLLMLLVLPMPHAFVTRMRQDGCASRVPPVRSPAATFS---TWTLLT---DMPSSTSLGATRVIDTHASTSSSQEGQDKNATGMAASALKTAALEKQARIARRDARRRRKQLALLEEEGKDGYMTQRGG--SGYMLPALSSGSTSTINSKNSHSALMHRRELPSLPKGGGLDATTSSSSRPHTVDLYVPSADLEVMLFWAHKLETLPALSRRGS-------SSIPPL-PREHKQLLFLDKEKRLLALAQMVLGMEKLRREIADARRASPAAAAADAPVTSRELAVRLGLTTEEVEAFYKLGLRARSYILMSMHSLILSLARKYAGTFGVDQAELVQEGYRGAVQAVERYDGRKAGGAGATFRGFAYVYVMSAMITAARNELHLGAAPLGVRDPDLMRLGSGEKGEGREGGTGRGLLLPSRSVGEGTRARTRGALPVDAVGSGEGWRGKQLALTAVSSAAGAGVGLLRGE---KEDGGGDDHDYDSWGDNDRDEDQEVVDVDEEEVAEAARGRKPTPLVGRRRKVRPTRRMIRMRGPAHEAIMELGSARRSPGRSGGGDGSSSSSSWGRRAELFGVDPEATRPAYELVDESTRTRDLNLFLKRAAAELPERDMQVLSLVYGLEGQVPMKKAQVAAKLGTSVAVVSKSEKRALNKLREMLNI 698
            KAP PS  GMFRSL    L V+L+ ++LP   AFV ++          P +S  A  S   TWT      +  S +SLGATRV D       +   QD+      A  +  A+  ++AR+AR+ ARRR++QL +   EG+ G   +RG   + YMLP+ +     T +   S         L +   G       +  SRPHTVDLYVPSADL+VML WA +L   PAL R G        SS+P L PR   QL++LDKE+RLLALAQMV+GMEK+R E+ +  +++P   A    +T+R LA RLGL+ EE  AFYKLGLRARSYIL+SMHSLI +LARKY  TFGVD+AELVQEGYRGA+QA+ERYD  KA   GATFR F+Y YVMSAMITAAR ELHL A P   R+   MRL  G +G G         LLP         A T GALP  A G G     + ++ T +         LL  +   KED G        W     + ++E    D EE AEAA  R+P P  GRR ++ P RR+ RM GPA E I E   A    G+ G G         GRRAELFGVDPE TRPAYE+VDES R  +L +FL+RAA EL  +DM+VLSL+YGL+G  P+ + QVA KLG S AVVSKSE+RAL KLREMLNI
Sbjct:   32 KAPLPS-HGMFRSLNGPFLYVVLLHMLLPRGAAFVAQL----------PYQSHVACGSRPWTWTAAGRAWESASHSSLGATRVAD------ETVPWQDEGDHAAVARNITEASAGREARLARKAARRRQRQLRV---EGQGGAHEERGNVATRYMLPSPTEAGLRTRDGPRSR--------LGARGHGESAAPGLTPPSRPHTVDLYVPSADLDVMLDWADRLP--PALDRPGEAAGSGGGSSLPSLRPRAAHQLVWLDKEQRLLALAQMVMGMEKVRAEMVE--KSAPGEGARG--ITTRMLAARLGLSPEEAAAFYKLGLRARSYILVSMHSLIAALARKYGATFGVDEAELVQEGYRGAMQALERYDRGKAEATGATFRAFSYFYVMSAMITAARKELHLDATPSSTRNAASMRLPPGTQGRG-----DASFLLP---------AGTAGALPAAASGLG---GSRPVSTTEIPPE------LLWKDVKAKEDDG-------EWKHGAEEGEEE----DPEEAAEAALYRRPLPRPGRRPRLGPMRRVTRM-GPAQEVIAEAVGA----GKQGAG-ARGDLGVGGRRAELFGVDPETTRPAYEIVDESKRAWELGMFLRRAAQELSPQDMEVLSLLYGLKGHSPLSRPQVARKLGLSTAVVSKSERRALKKLREMLNI 637          
The following BLAST results are available for this feature:
BLAST of NO15G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22422.16.700e-11247.50rna polymerase sigma-e factor [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01550NO15G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01550.1NO15G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01550.1.cds1NO15G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01550.1 ID=NO15G01550.1|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp
AACAGGCCCTCAACTTGAGCGACGACGTTCGTGCAGGTCACCGACACGCG
CAAGTGATTGCCATGGCGACAAGGGACGCCCGGCAGCCGCGTATCTGCAT
AAGAAGACCATGGGCAATACAAGCAGACACATTGCCAGCTGTAAATCCAC
CAGCACGGCTTCCGTGCCCTTCCCATGCAAAGGCACCACGTCCTTCTGCG
AAGGGGATGTTCCGGTCCCTGCTGCTGCCCGTCCTGCTCATGCTGCTGGT
ACTCCCTATGCCCCACGCGTTTGTCACAAGGATGCGGCAGGATGGCTGTG
CCTCGAGAGTACCGCCAGTACGGTCGCCAGCAGCGACCTTCTCCACCTGG
ACATTGCTGACTGACATGCCCTCCTCAACTTCGCTTGGCGCCACCCGCGT
TATCGATACCCACGCCTCAACGTCCTCCTCACAAGAAGGACAGGACAAAA
ATGCGACCGGCATGGCAGCCTCAGCCCTCAAGACAGCCGCATTAGAAAAG
CAAGCGAGAATAGCACGGCGCGATGCCCGCCGCCGACGCAAGCAACTGGC
GCTTCTAGAAGAGGAGGGTAAAGATGGTTACATGACGCAGCGTGGTGGTA
GTGGGTACATGCTTCCTGCCTTGAGCAGTGGCAGCACCAGCACCATTAAC
AGTAAAAATAGTCACAGTGCCCTAATGCACCGTCGCGAGTTGCCTTCTCT
TCCGAAAGGGGGAGGGCTGGATGCTACCACCTCGTCTTCCTCGCGTCCTC
ACACAGTGGATCTGTATGTGCCTTCTGCTGACTTAGAAGTGATGCTCTTC
TGGGCCCATAAGCTAGAGACCCTCCCTGCTTTGAGCAGGCGCGGCAGCAG
TAGTATCCCTCCTCTTCCTCGTGAGCATAAGCAGCTCCTCTTTCTCGACA
AGGAAAAGCGTTTGCTTGCCCTGGCCCAAATGGTTTTAGGTATGGAAAAG
CTCCGACGGGAAATAGCAGACGCTCGCCGTGCTAGTCCGGCTGCAGCTGC
TGCTGATGCCCCCGTGACCTCCCGGGAGCTGGCGGTGCGCTTGGGGTTGA
CAACGGAGGAGGTGGAGGCGTTTTATAAGTTGGGTTTACGAGCACGCAGT
TACATTCTAATGAGCATGCACTCACTCATTCTTTCGCTAGCGAGGAAATA
TGCAGGTACCTTTGGTGTGGATCAAGCTGAACTGGTTCAAGAAGGGTATA
GAGGAGCGGTGCAGGCGGTGGAGAGGTACGATGGCAGGAAGGCAGGAGGG
GCTGGGGCAACGTTTCGGGGATTTGCGTATGTGTATGTGATGAGTGCTAT
GATTACTGCTGCGAGAAATGAATTGCACCTGGGGGCAGCGCCCTTGGGAG
TGAGAGATCCAGATTTGATGAGGTTGGGTTCGGGGGAGAAGGGGGAGGGG
AGGGAGGGAGGGACAGGGAGGGGGCTGCTGTTGCCCTCCAGGAGTGTTGG
AGAGGGAACGAGAGCGAGGACGAGGGGGGCCTTGCCCGTGGATGCGGTCG
GGAGTGGAGAAGGGTGGAGAGGGAAGCAGCTGGCGCTAACGGCAGTGTCG
TCTGCAGCTGGAGCAGGAGTGGGTTTGTTGAGAGGAGAAAAGGAGGATGG
TGGCGGCGACGACCACGATTACGATTCTTGGGGAGACAATGACCGAGACG
AGGACCAAGAAGTGGTCGATGTGGACGAGGAGGAGGTGGCAGAGGCGGCT
CGTGGGCGCAAGCCTACCCCTCTGGTGGGACGACGACGGAAGGTGAGACC
GACGAGGAGGATGATAAGAATGAGGGGCCCGGCACATGAGGCGATTATGG
AGCTTGGGTCTGCTAGGAGGAGTCCAGGCCGATCTGGCGGCGGGGATGGC
AGCAGTAGTAGCAGTAGCTGGGGGAGGAGGGCGGAATTGTTTGGGGTGGA
CCCAGAGGCGACACGACCGGCATACGAGCTCGTCGATGAGAGCACACGGA
CGAGGGACTTGAATCTTTTCTTGAAACGAGCGGCGGCTGAATTGCCAGAG
AGGGATATGCAAGTGTTGAGTCTTGTGTATGGGTTGGAAGGGCAGGTGCC
GATGAAGAAAGCGCAAGTAGCAGCAAAGTTGGGCACGTCTGTGGCGGTGG
TGAGTAAAAGTGAGAAGCGGGCATTGAACAAGCTGAGAGAGATGTTGAAC
ATCAAAGAGGAGGTGTAGAAGGGGAAGGACAGAGGGAGAGAGGGGAGGAG
AGAAAATGACATGCAGTAGTCAATAACCTGTTTGATGACGATTGCCGCAC
AATCAAGTAGGCAGTCGGAAAACAGAAACATCGCGCTGGAACAAAGCAAC
GTGGAATGCGTTGAGGAAGAGAGAAGGACGGCGTGCATGTGTATAATTTT
ACACACATACAAGTAGGATTTTCTGATGCAGAATAAACAACATGTGTAGA
TAGGCAAAGCGAATAGTTTATTAAAAAGACGAAATCTCACCAAAATGTAA
GTGGTGCGTTCACATCACAGCGAG
back to top

protein sequence of NO15G01550.1

>NO15G01550.1-protein ID=NO15G01550.1-protein|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp
MATRDARQPRICIRRPWAIQADTLPAVNPPARLPCPSHAKAPRPSAKGMF
RSLLLPVLLMLLVLPMPHAFVTRMRQDGCASRVPPVRSPAATFSTWTLLT
DMPSSTSLGATRVIDTHASTSSSQEGQDKNATGMAASALKTAALEKQARI
ARRDARRRRKQLALLEEEGKDGYMTQRGGSGYMLPALSSGSTSTINSKNS
HSALMHRRELPSLPKGGGLDATTSSSSRPHTVDLYVPSADLEVMLFWAHK
LETLPALSRRGSSSIPPLPREHKQLLFLDKEKRLLALAQMVLGMEKLRRE
IADARRASPAAAAADAPVTSRELAVRLGLTTEEVEAFYKLGLRARSYILM
SMHSLILSLARKYAGTFGVDQAELVQEGYRGAVQAVERYDGRKAGGAGAT
FRGFAYVYVMSAMITAARNELHLGAAPLGVRDPDLMRLGSGEKGEGREGG
TGRGLLLPSRSVGEGTRARTRGALPVDAVGSGEGWRGKQLALTAVSSAAG
AGVGLLRGEKEDGGGDDHDYDSWGDNDRDEDQEVVDVDEEEVAEAARGRK
PTPLVGRRRKVRPTRRMIRMRGPAHEAIMELGSARRSPGRSGGGDGSSSS
SSWGRRAELFGVDPEATRPAYELVDESTRTRDLNLFLKRAAAELPERDMQ
VLSLVYGLEGQVPMKKAQVAAKLGTSVAVVSKSEKRALNKLREMLNIKEE
V*
back to top

mRNA from alignment at chr15:436511..438984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01550.1 ID=NO15G01550.1|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp|location=Sequence derived from alignment at chr15:436511..438984- (Nannochloropsis oceanica)
AACAGGCCCTCAACTTGAGCGACGACGTTCGTGCAGGTCACCGACACGCG CAAGTGATTGCCATGGCGACAAGGGACGCCCGGCAGCCGCGTATCTGCAT AAGAAGACCATGGGCAATACAAGCAGACACATTGCCAGCTGTAAATCCAC CAGCACGGCTTCCGTGCCCTTCCCATGCAAAGGCACCACGTCCTTCTGCG AAGGGGATGTTCCGGTCCCTGCTGCTGCCCGTCCTGCTCATGCTGCTGGT ACTCCCTATGCCCCACGCGTTTGTCACAAGGATGCGGCAGGATGGCTGTG CCTCGAGAGTACCGCCAGTACGGTCGCCAGCAGCGACCTTCTCCACCTGG ACATTGCTGACTGACATGCCCTCCTCAACTTCGCTTGGCGCCACCCGCGT TATCGATACCCACGCCTCAACGTCCTCCTCACAAGAAGGACAGGACAAAA ATGCGACCGGCATGGCAGCCTCAGCCCTCAAGACAGCCGCATTAGAAAAG CAAGCGAGAATAGCACGGCGCGATGCCCGCCGCCGACGCAAGCAACTGGC GCTTCTAGAAGAGGAGGGTAAAGATGGTTACATGACGCAGCGTGGTGGTA GTGGGTACATGCTTCCTGCCTTGAGCAGTGGCAGCACCAGCACCATTAAC AGTAAAAATAGTCACAGTGCCCTAATGCACCGTCGCGAGTTGCCTTCTCT TCCGAAAGGGGGAGGGCTGGATGCTACCACCTCGTCTTCCTCGCGTCCTC ACACAGTGGATCTGTATGTGCCTTCTGCTGACTTAGAAGTGATGCTCTTC TGGGCCCATAAGCTAGAGACCCTCCCTGCTTTGAGCAGGCGCGGCAGCAG TAGTATCCCTCCTCTTCCTCGTGAGCATAAGCAGCTCCTCTTTCTCGACA AGGAAAAGCGTTTGCTTGCCCTGGCCCAAATGGTTTTAGGTATGGAAAAG CTCCGACGGGAAATAGCAGACGCTCGCCGTGCTAGTCCGGCTGCAGCTGC TGCTGATGCCCCCGTGACCTCCCGGGAGCTGGCGGTGCGCTTGGGGTTGA CAACGGAGGAGGTGGAGGCGTTTTATAAGTTGGGTTTACGAGCACGCAGT TACATTCTAATGAGCATGCACTCACTCATTCTTTCGCTAGCGAGGAAATA TGCAGGTACCTTTGGTGTGGATCAAGCTGAACTGGTTCAAGAAGGGTATA GAGGAGCGGTGCAGGCGGTGGAGAGGTACGATGGCAGGAAGGCAGGAGGG GCTGGGGCAACGTTTCGGGGATTTGCGTATGTGTATGTGATGAGTGCTAT GATTACTGCTGCGAGAAATGAATTGCACCTGGGGGCAGCGCCCTTGGGAG TGAGAGATCCAGATTTGATGAGGTTGGGTTCGGGGGAGAAGGGGGAGGGG AGGGAGGGAGGGACAGGGAGGGGGCTGCTGTTGCCCTCCAGGAGTGTTGG AGAGGGAACGAGAGCGAGGACGAGGGGGGCCTTGCCCGTGGATGCGGTCG GGAGTGGAGAAGGGTGGAGAGGGAAGCAGCTGGCGCTAACGGCAGTGTCG TCTGCAGCTGGAGCAGGAGTGGGTTTGTTGAGAGGAGAAAAGGAGGATGG TGGCGGCGACGACCACGATTACGATTCTTGGGGAGACAATGACCGAGACG AGGACCAAGAAGTGGTCGATGTGGACGAGGAGGAGGTGGCAGAGGCGGCT CGTGGGCGCAAGCCTACCCCTCTGGTGGGACGACGACGGAAGGTGAGACC GACGAGGAGGATGATAAGAATGAGGGGCCCGGCACATGAGGCGATTATGG AGCTTGGGTCTGCTAGGAGGAGTCCAGGCCGATCTGGCGGCGGGGATGGC AGCAGTAGTAGCAGTAGCTGGGGGAGGAGGGCGGAATTGTTTGGGGTGGA CCCAGAGGCGACACGACCGGCATACGAGCTCGTCGATGAGAGCACACGGA CGAGGGACTTGAATCTTTTCTTGAAACGAGCGGCGGCTGAATTGCCAGAG AGGGATATGCAAGTGTTGAGTCTTGTGTATGGGTTGGAAGGGCAGGTGCC GATGAAGAAAGCGCAAGTAGCAGCAAAGTTGGGCACGTCTGTGGCGGTGG TGAGTAAAAGTGAGAAGCGGGCATTGAACAAGCTGAGAGAGATGTTGAAC ATCAAAGAGGAGGTGTAGAAGGGGAAGGACAGAGGGAGAGAGGGGAGGAG AGAAAATGACATGCAGTAGTCAATAACCTGTTTGATGACGATTGCCGCAC AATCAAGTAGGCAGTCGGAAAACAGAAACATCGCGCTGGAACAAAGCAAC GTGGAATGCGTTGAGGAAGAGAGAAGGACGGCGTGCATGTGTATAATTTT ACACACATACAAGTAGGATTTTCTGATGCAGAATAAACAACATGTGTAGA TAGGCAAAGCGAATAGTTTATTAAAAAGACGAAATCTCACCAAAATGTAA GTGGTGCGTTCACATCACAGCGAG
back to top

Coding sequence (CDS) from alignment at chr15:436511..438984-

>NO15G01550.1 ID=NO15G01550.1|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at chr15:436511..438984- (Nannochloropsis oceanica)
ATGGCGACAAGGGACGCCCGGCAGCCGCGTATCTGCATAAGAAGACCATG
GGCAATACAAGCAGACACATTGCCAGCTGTAAATCCACCAGCACGGCTTC
CGTGCCCTTCCCATGCAAAGGCACCACGTCCTTCTGCGAAGGGGATGTTC
CGGTCCCTGCTGCTGCCCGTCCTGCTCATGCTGCTGGTACTCCCTATGCC
CCACGCGTTTGTCACAAGGATGCGGCAGGATGGCTGTGCCTCGAGAGTAC
CGCCAGTACGGTCGCCAGCAGCGACCTTCTCCACCTGGACATTGCTGACT
GACATGCCCTCCTCAACTTCGCTTGGCGCCACCCGCGTTATCGATACCCA
CGCCTCAACGTCCTCCTCACAAGAAGGACAGGACAAAAATGCGACCGGCA
TGGCAGCCTCAGCCCTCAAGACAGCCGCATTAGAAAAGCAAGCGAGAATA
GCACGGCGCGATGCCCGCCGCCGACGCAAGCAACTGGCGCTTCTAGAAGA
GGAGGGTAAAGATGGTTACATGACGCAGCGTGGTGGTAGTGGGTACATGC
TTCCTGCCTTGAGCAGTGGCAGCACCAGCACCATTAACAGTAAAAATAGT
CACAGTGCCCTAATGCACCGTCGCGAGTTGCCTTCTCTTCCGAAAGGGGG
AGGGCTGGATGCTACCACCTCGTCTTCCTCGCGTCCTCACACAGTGGATC
TGTATGTGCCTTCTGCTGACTTAGAAGTGATGCTCTTCTGGGCCCATAAG
CTAGAGACCCTCCCTGCTTTGAGCAGGCGCGGCAGCAGTAGTATCCCTCC
TCTTCCTCGTGAGCATAAGCAGCTCCTCTTTCTCGACAAGGAAAAGCGTT
TGCTTGCCCTGGCCCAAATGGTTTTAGGTATGGAAAAGCTCCGACGGGAA
ATAGCAGACGCTCGCCGTGCTAGTCCGGCTGCAGCTGCTGCTGATGCCCC
CGTGACCTCCCGGGAGCTGGCGGTGCGCTTGGGGTTGACAACGGAGGAGG
TGGAGGCGTTTTATAAGTTGGGTTTACGAGCACGCAGTTACATTCTAATG
AGCATGCACTCACTCATTCTTTCGCTAGCGAGGAAATATGCAGGTACCTT
TGGTGTGGATCAAGCTGAACTGGTTCAAGAAGGGTATAGAGGAGCGGTGC
AGGCGGTGGAGAGGTACGATGGCAGGAAGGCAGGAGGGGCTGGGGCAACG
TTTCGGGGATTTGCGTATGTGTATGTGATGAGTGCTATGATTACTGCTGC
GAGAAATGAATTGCACCTGGGGGCAGCGCCCTTGGGAGTGAGAGATCCAG
ATTTGATGAGGTTGGGTTCGGGGGAGAAGGGGGAGGGGAGGGAGGGAGGG
ACAGGGAGGGGGCTGCTGTTGCCCTCCAGGAGTGTTGGAGAGGGAACGAG
AGCGAGGACGAGGGGGGCCTTGCCCGTGGATGCGGTCGGGAGTGGAGAAG
GGTGGAGAGGGAAGCAGCTGGCGCTAACGGCAGTGTCGTCTGCAGCTGGA
GCAGGAGTGGGTTTGTTGAGAGGAGAAAAGGAGGATGGTGGCGGCGACGA
CCACGATTACGATTCTTGGGGAGACAATGACCGAGACGAGGACCAAGAAG
TGGTCGATGTGGACGAGGAGGAGGTGGCAGAGGCGGCTCGTGGGCGCAAG
CCTACCCCTCTGGTGGGACGACGACGGAAGGTGAGACCGACGAGGAGGAT
GATAAGAATGAGGGGCCCGGCACATGAGGCGATTATGGAGCTTGGGTCTG
CTAGGAGGAGTCCAGGCCGATCTGGCGGCGGGGATGGCAGCAGTAGTAGC
AGTAGCTGGGGGAGGAGGGCGGAATTGTTTGGGGTGGACCCAGAGGCGAC
ACGACCGGCATACGAGCTCGTCGATGAGAGCACACGGACGAGGGACTTGA
ATCTTTTCTTGAAACGAGCGGCGGCTGAATTGCCAGAGAGGGATATGCAA
GTGTTGAGTCTTGTGTATGGGTTGGAAGGGCAGGTGCCGATGAAGAAAGC
GCAAGTAGCAGCAAAGTTGGGCACGTCTGTGGCGGTGGTGAGTAAAAGTG
AGAAGCGGGCATTGAACAAGCTGAGAGAGATGTTGAACATCAAAGAGGAG
GTGTAG
back to top
Synonyms
Publications