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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr15 | genome | chr15:436511..438984 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G01550.1 vs.
Match: EWM22422.1 (rna polymerase sigma-e factor [Nannochloropsis gaditana]) HSP 1 Score: 414.5 bits (1064), Expect = 6.700e-112 Identity = 323/680 (47.50%), Postives = 399/680 (58.68%), Query Frame = 0
Query: 40 KAPRPSAKGMFRSL---LLPVLLMLLVLPMPHAFVTRMRQDGCASRVPPVRSPAATFS---TWTLLT---DMPSSTSLGATRVIDTHASTSSSQEGQDKNATGMAASALKTAALEKQARIARRDARRRRKQLALLEEEGKDGYMTQRGG--SGYMLPALSSGSTSTINSKNSHSALMHRRELPSLPKGGGLDATTSSSSRPHTVDLYVPSADLEVMLFWAHKLETLPALSRRGS-------SSIPPL-PREHKQLLFLDKEKRLLALAQMVLGMEKLRREIADARRASPAAAAADAPVTSRELAVRLGLTTEEVEAFYKLGLRARSYILMSMHSLILSLARKYAGTFGVDQAELVQEGYRGAVQAVERYDGRKAGGAGATFRGFAYVYVMSAMITAARNELHLGAAPLGVRDPDLMRLGSGEKGEGREGGTGRGLLLPSRSVGEGTRARTRGALPVDAVGSGEGWRGKQLALTAVSSAAGAGVGLLRGE---KEDGGGDDHDYDSWGDNDRDEDQEVVDVDEEEVAEAARGRKPTPLVGRRRKVRPTRRMIRMRGPAHEAIMELGSARRSPGRSGGGDGSSSSSSWGRRAELFGVDPEATRPAYELVDESTRTRDLNLFLKRAAAELPERDMQVLSLVYGLEGQVPMKKAQVAAKLGTSVAVVSKSEKRALNKLREMLNI 698
KAP PS GMFRSL L V+L+ ++LP AFV ++ P +S A S TWT + S +SLGATRV D + QD+ A + A+ ++AR+AR+ ARRR++QL + EG+ G +RG + YMLP+ + T + S L + G + SRPHTVDLYVPSADL+VML WA +L PAL R G SS+P L PR QL++LDKE+RLLALAQMV+GMEK+R E+ + +++P A +T+R LA RLGL+ EE AFYKLGLRARSYIL+SMHSLI +LARKY TFGVD+AELVQEGYRGA+QA+ERYD KA GATFR F+Y YVMSAMITAAR ELHL A P R+ MRL G +G G LLP A T GALP A G G + ++ T + LL + KED G W + ++E D EE AEAA R+P P GRR ++ P RR+ RM GPA E I E A G+ G G GRRAELFGVDPE TRPAYE+VDES R +L +FL+RAA EL +DM+VLSL+YGL+G P+ + QVA KLG S AVVSKSE+RAL KLREMLNI
Sbjct: 32 KAPLPS-HGMFRSLNGPFLYVVLLHMLLPRGAAFVAQL----------PYQSHVACGSRPWTWTAAGRAWESASHSSLGATRVAD------ETVPWQDEGDHAAVARNITEASAGREARLARKAARRRQRQLRV---EGQGGAHEERGNVATRYMLPSPTEAGLRTRDGPRSR--------LGARGHGESAAPGLTPPSRPHTVDLYVPSADLDVMLDWADRLP--PALDRPGEAAGSGGGSSLPSLRPRAAHQLVWLDKEQRLLALAQMVMGMEKVRAEMVE--KSAPGEGARG--ITTRMLAARLGLSPEEAAAFYKLGLRARSYILVSMHSLIAALARKYGATFGVDEAELVQEGYRGAMQALERYDRGKAEATGATFRAFSYFYVMSAMITAARKELHLDATPSSTRNAASMRLPPGTQGRG-----DASFLLP---------AGTAGALPAAASGLG---GSRPVSTTEIPPE------LLWKDVKAKEDDG-------EWKHGAEEGEEE----DPEEAAEAALYRRPLPRPGRRPRLGPMRRVTRM-GPAQEVIAEAVGA----GKQGAG-ARGDLGVGGRRAELFGVDPETTRPAYEIVDESKRAWELGMFLRRAAQELSPQDMEVLSLLYGLKGHSPLSRPQVARKLGLSTAVVSKSERRALKKLREMLNI 637
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G01550.1 ID=NO15G01550.1|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp AACAGGCCCTCAACTTGAGCGACGACGTTCGTGCAGGTCACCGACACGCG CAAGTGATTGCCATGGCGACAAGGGACGCCCGGCAGCCGCGTATCTGCAT AAGAAGACCATGGGCAATACAAGCAGACACATTGCCAGCTGTAAATCCAC CAGCACGGCTTCCGTGCCCTTCCCATGCAAAGGCACCACGTCCTTCTGCG AAGGGGATGTTCCGGTCCCTGCTGCTGCCCGTCCTGCTCATGCTGCTGGT ACTCCCTATGCCCCACGCGTTTGTCACAAGGATGCGGCAGGATGGCTGTG CCTCGAGAGTACCGCCAGTACGGTCGCCAGCAGCGACCTTCTCCACCTGG ACATTGCTGACTGACATGCCCTCCTCAACTTCGCTTGGCGCCACCCGCGT TATCGATACCCACGCCTCAACGTCCTCCTCACAAGAAGGACAGGACAAAA ATGCGACCGGCATGGCAGCCTCAGCCCTCAAGACAGCCGCATTAGAAAAG CAAGCGAGAATAGCACGGCGCGATGCCCGCCGCCGACGCAAGCAACTGGC GCTTCTAGAAGAGGAGGGTAAAGATGGTTACATGACGCAGCGTGGTGGTA GTGGGTACATGCTTCCTGCCTTGAGCAGTGGCAGCACCAGCACCATTAAC AGTAAAAATAGTCACAGTGCCCTAATGCACCGTCGCGAGTTGCCTTCTCT TCCGAAAGGGGGAGGGCTGGATGCTACCACCTCGTCTTCCTCGCGTCCTC ACACAGTGGATCTGTATGTGCCTTCTGCTGACTTAGAAGTGATGCTCTTC TGGGCCCATAAGCTAGAGACCCTCCCTGCTTTGAGCAGGCGCGGCAGCAG TAGTATCCCTCCTCTTCCTCGTGAGCATAAGCAGCTCCTCTTTCTCGACA AGGAAAAGCGTTTGCTTGCCCTGGCCCAAATGGTTTTAGGTATGGAAAAG CTCCGACGGGAAATAGCAGACGCTCGCCGTGCTAGTCCGGCTGCAGCTGC TGCTGATGCCCCCGTGACCTCCCGGGAGCTGGCGGTGCGCTTGGGGTTGA CAACGGAGGAGGTGGAGGCGTTTTATAAGTTGGGTTTACGAGCACGCAGT TACATTCTAATGAGCATGCACTCACTCATTCTTTCGCTAGCGAGGAAATA TGCAGGTACCTTTGGTGTGGATCAAGCTGAACTGGTTCAAGAAGGGTATA GAGGAGCGGTGCAGGCGGTGGAGAGGTACGATGGCAGGAAGGCAGGAGGG GCTGGGGCAACGTTTCGGGGATTTGCGTATGTGTATGTGATGAGTGCTAT GATTACTGCTGCGAGAAATGAATTGCACCTGGGGGCAGCGCCCTTGGGAG TGAGAGATCCAGATTTGATGAGGTTGGGTTCGGGGGAGAAGGGGGAGGGG AGGGAGGGAGGGACAGGGAGGGGGCTGCTGTTGCCCTCCAGGAGTGTTGG AGAGGGAACGAGAGCGAGGACGAGGGGGGCCTTGCCCGTGGATGCGGTCG GGAGTGGAGAAGGGTGGAGAGGGAAGCAGCTGGCGCTAACGGCAGTGTCG TCTGCAGCTGGAGCAGGAGTGGGTTTGTTGAGAGGAGAAAAGGAGGATGG TGGCGGCGACGACCACGATTACGATTCTTGGGGAGACAATGACCGAGACG AGGACCAAGAAGTGGTCGATGTGGACGAGGAGGAGGTGGCAGAGGCGGCT CGTGGGCGCAAGCCTACCCCTCTGGTGGGACGACGACGGAAGGTGAGACC GACGAGGAGGATGATAAGAATGAGGGGCCCGGCACATGAGGCGATTATGG AGCTTGGGTCTGCTAGGAGGAGTCCAGGCCGATCTGGCGGCGGGGATGGC AGCAGTAGTAGCAGTAGCTGGGGGAGGAGGGCGGAATTGTTTGGGGTGGA CCCAGAGGCGACACGACCGGCATACGAGCTCGTCGATGAGAGCACACGGA CGAGGGACTTGAATCTTTTCTTGAAACGAGCGGCGGCTGAATTGCCAGAG AGGGATATGCAAGTGTTGAGTCTTGTGTATGGGTTGGAAGGGCAGGTGCC GATGAAGAAAGCGCAAGTAGCAGCAAAGTTGGGCACGTCTGTGGCGGTGG TGAGTAAAAGTGAGAAGCGGGCATTGAACAAGCTGAGAGAGATGTTGAAC ATCAAAGAGGAGGTGTAGAAGGGGAAGGACAGAGGGAGAGAGGGGAGGAG AGAAAATGACATGCAGTAGTCAATAACCTGTTTGATGACGATTGCCGCAC AATCAAGTAGGCAGTCGGAAAACAGAAACATCGCGCTGGAACAAAGCAAC GTGGAATGCGTTGAGGAAGAGAGAAGGACGGCGTGCATGTGTATAATTTT ACACACATACAAGTAGGATTTTCTGATGCAGAATAAACAACATGTGTAGA TAGGCAAAGCGAATAGTTTATTAAAAAGACGAAATCTCACCAAAATGTAA GTGGTGCGTTCACATCACAGCGAG back to topprotein sequence of NO15G01550.1 >NO15G01550.1-protein ID=NO15G01550.1-protein|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp MATRDARQPRICIRRPWAIQADTLPAVNPPARLPCPSHAKAPRPSAKGMF RSLLLPVLLMLLVLPMPHAFVTRMRQDGCASRVPPVRSPAATFSTWTLLT DMPSSTSLGATRVIDTHASTSSSQEGQDKNATGMAASALKTAALEKQARI ARRDARRRRKQLALLEEEGKDGYMTQRGGSGYMLPALSSGSTSTINSKNS HSALMHRRELPSLPKGGGLDATTSSSSRPHTVDLYVPSADLEVMLFWAHK LETLPALSRRGSSSIPPLPREHKQLLFLDKEKRLLALAQMVLGMEKLRRE IADARRASPAAAAADAPVTSRELAVRLGLTTEEVEAFYKLGLRARSYILM SMHSLILSLARKYAGTFGVDQAELVQEGYRGAVQAVERYDGRKAGGAGAT FRGFAYVYVMSAMITAARNELHLGAAPLGVRDPDLMRLGSGEKGEGREGG TGRGLLLPSRSVGEGTRARTRGALPVDAVGSGEGWRGKQLALTAVSSAAG AGVGLLRGEKEDGGGDDHDYDSWGDNDRDEDQEVVDVDEEEVAEAARGRK PTPLVGRRRKVRPTRRMIRMRGPAHEAIMELGSARRSPGRSGGGDGSSSS SSWGRRAELFGVDPEATRPAYELVDESTRTRDLNLFLKRAAAELPERDMQ VLSLVYGLEGQVPMKKAQVAAKLGTSVAVVSKSEKRALNKLREMLNIKEE V* back to topmRNA from alignment at chr15:436511..438984- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G01550.1 ID=NO15G01550.1|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp|location=Sequence derived from alignment at chr15:436511..438984- (Nannochloropsis oceanica) AACAGGCCCTCAACTTGAGCGACGACGTTCGTGCAGGTCACCGACACGCG
CAAGTGATTGCCATGGCGACAAGGGACGCCCGGCAGCCGCGTATCTGCAT
AAGAAGACCATGGGCAATACAAGCAGACACATTGCCAGCTGTAAATCCAC
CAGCACGGCTTCCGTGCCCTTCCCATGCAAAGGCACCACGTCCTTCTGCG
AAGGGGATGTTCCGGTCCCTGCTGCTGCCCGTCCTGCTCATGCTGCTGGT
ACTCCCTATGCCCCACGCGTTTGTCACAAGGATGCGGCAGGATGGCTGTG
CCTCGAGAGTACCGCCAGTACGGTCGCCAGCAGCGACCTTCTCCACCTGG
ACATTGCTGACTGACATGCCCTCCTCAACTTCGCTTGGCGCCACCCGCGT
TATCGATACCCACGCCTCAACGTCCTCCTCACAAGAAGGACAGGACAAAA
ATGCGACCGGCATGGCAGCCTCAGCCCTCAAGACAGCCGCATTAGAAAAG
CAAGCGAGAATAGCACGGCGCGATGCCCGCCGCCGACGCAAGCAACTGGC
GCTTCTAGAAGAGGAGGGTAAAGATGGTTACATGACGCAGCGTGGTGGTA
GTGGGTACATGCTTCCTGCCTTGAGCAGTGGCAGCACCAGCACCATTAAC
AGTAAAAATAGTCACAGTGCCCTAATGCACCGTCGCGAGTTGCCTTCTCT
TCCGAAAGGGGGAGGGCTGGATGCTACCACCTCGTCTTCCTCGCGTCCTC
ACACAGTGGATCTGTATGTGCCTTCTGCTGACTTAGAAGTGATGCTCTTC
TGGGCCCATAAGCTAGAGACCCTCCCTGCTTTGAGCAGGCGCGGCAGCAG
TAGTATCCCTCCTCTTCCTCGTGAGCATAAGCAGCTCCTCTTTCTCGACA
AGGAAAAGCGTTTGCTTGCCCTGGCCCAAATGGTTTTAGGTATGGAAAAG
CTCCGACGGGAAATAGCAGACGCTCGCCGTGCTAGTCCGGCTGCAGCTGC
TGCTGATGCCCCCGTGACCTCCCGGGAGCTGGCGGTGCGCTTGGGGTTGA
CAACGGAGGAGGTGGAGGCGTTTTATAAGTTGGGTTTACGAGCACGCAGT
TACATTCTAATGAGCATGCACTCACTCATTCTTTCGCTAGCGAGGAAATA
TGCAGGTACCTTTGGTGTGGATCAAGCTGAACTGGTTCAAGAAGGGTATA
GAGGAGCGGTGCAGGCGGTGGAGAGGTACGATGGCAGGAAGGCAGGAGGG
GCTGGGGCAACGTTTCGGGGATTTGCGTATGTGTATGTGATGAGTGCTAT
GATTACTGCTGCGAGAAATGAATTGCACCTGGGGGCAGCGCCCTTGGGAG
TGAGAGATCCAGATTTGATGAGGTTGGGTTCGGGGGAGAAGGGGGAGGGG
AGGGAGGGAGGGACAGGGAGGGGGCTGCTGTTGCCCTCCAGGAGTGTTGG
AGAGGGAACGAGAGCGAGGACGAGGGGGGCCTTGCCCGTGGATGCGGTCG
GGAGTGGAGAAGGGTGGAGAGGGAAGCAGCTGGCGCTAACGGCAGTGTCG
TCTGCAGCTGGAGCAGGAGTGGGTTTGTTGAGAGGAGAAAAGGAGGATGG
TGGCGGCGACGACCACGATTACGATTCTTGGGGAGACAATGACCGAGACG
AGGACCAAGAAGTGGTCGATGTGGACGAGGAGGAGGTGGCAGAGGCGGCT
CGTGGGCGCAAGCCTACCCCTCTGGTGGGACGACGACGGAAGGTGAGACC
GACGAGGAGGATGATAAGAATGAGGGGCCCGGCACATGAGGCGATTATGG
AGCTTGGGTCTGCTAGGAGGAGTCCAGGCCGATCTGGCGGCGGGGATGGC
AGCAGTAGTAGCAGTAGCTGGGGGAGGAGGGCGGAATTGTTTGGGGTGGA
CCCAGAGGCGACACGACCGGCATACGAGCTCGTCGATGAGAGCACACGGA
CGAGGGACTTGAATCTTTTCTTGAAACGAGCGGCGGCTGAATTGCCAGAG
AGGGATATGCAAGTGTTGAGTCTTGTGTATGGGTTGGAAGGGCAGGTGCC
GATGAAGAAAGCGCAAGTAGCAGCAAAGTTGGGCACGTCTGTGGCGGTGG
TGAGTAAAAGTGAGAAGCGGGCATTGAACAAGCTGAGAGAGATGTTGAAC
ATCAAAGAGGAGGTGTAGAAGGGGAAGGACAGAGGGAGAGAGGGGAGGAG
AGAAAATGACATGCAGTAGTCAATAACCTGTTTGATGACGATTGCCGCAC
AATCAAGTAGGCAGTCGGAAAACAGAAACATCGCGCTGGAACAAAGCAAC
GTGGAATGCGTTGAGGAAGAGAGAAGGACGGCGTGCATGTGTATAATTTT
ACACACATACAAGTAGGATTTTCTGATGCAGAATAAACAACATGTGTAGA
TAGGCAAAGCGAATAGTTTATTAAAAAGACGAAATCTCACCAAAATGTAA
GTGGTGCGTTCACATCACAGCGAG back to topCoding sequence (CDS) from alignment at chr15:436511..438984- >NO15G01550.1 ID=NO15G01550.1|Name=NO15G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at chr15:436511..438984- (Nannochloropsis oceanica) ATGGCGACAAGGGACGCCCGGCAGCCGCGTATCTGCATAAGAAGACCATG GGCAATACAAGCAGACACATTGCCAGCTGTAAATCCACCAGCACGGCTTC CGTGCCCTTCCCATGCAAAGGCACCACGTCCTTCTGCGAAGGGGATGTTC CGGTCCCTGCTGCTGCCCGTCCTGCTCATGCTGCTGGTACTCCCTATGCC CCACGCGTTTGTCACAAGGATGCGGCAGGATGGCTGTGCCTCGAGAGTAC CGCCAGTACGGTCGCCAGCAGCGACCTTCTCCACCTGGACATTGCTGACT GACATGCCCTCCTCAACTTCGCTTGGCGCCACCCGCGTTATCGATACCCA CGCCTCAACGTCCTCCTCACAAGAAGGACAGGACAAAAATGCGACCGGCA TGGCAGCCTCAGCCCTCAAGACAGCCGCATTAGAAAAGCAAGCGAGAATA GCACGGCGCGATGCCCGCCGCCGACGCAAGCAACTGGCGCTTCTAGAAGA GGAGGGTAAAGATGGTTACATGACGCAGCGTGGTGGTAGTGGGTACATGC TTCCTGCCTTGAGCAGTGGCAGCACCAGCACCATTAACAGTAAAAATAGT CACAGTGCCCTAATGCACCGTCGCGAGTTGCCTTCTCTTCCGAAAGGGGG AGGGCTGGATGCTACCACCTCGTCTTCCTCGCGTCCTCACACAGTGGATC TGTATGTGCCTTCTGCTGACTTAGAAGTGATGCTCTTCTGGGCCCATAAG CTAGAGACCCTCCCTGCTTTGAGCAGGCGCGGCAGCAGTAGTATCCCTCC TCTTCCTCGTGAGCATAAGCAGCTCCTCTTTCTCGACAAGGAAAAGCGTT TGCTTGCCCTGGCCCAAATGGTTTTAGGTATGGAAAAGCTCCGACGGGAA ATAGCAGACGCTCGCCGTGCTAGTCCGGCTGCAGCTGCTGCTGATGCCCC CGTGACCTCCCGGGAGCTGGCGGTGCGCTTGGGGTTGACAACGGAGGAGG TGGAGGCGTTTTATAAGTTGGGTTTACGAGCACGCAGTTACATTCTAATG AGCATGCACTCACTCATTCTTTCGCTAGCGAGGAAATATGCAGGTACCTT TGGTGTGGATCAAGCTGAACTGGTTCAAGAAGGGTATAGAGGAGCGGTGC AGGCGGTGGAGAGGTACGATGGCAGGAAGGCAGGAGGGGCTGGGGCAACG TTTCGGGGATTTGCGTATGTGTATGTGATGAGTGCTATGATTACTGCTGC GAGAAATGAATTGCACCTGGGGGCAGCGCCCTTGGGAGTGAGAGATCCAG ATTTGATGAGGTTGGGTTCGGGGGAGAAGGGGGAGGGGAGGGAGGGAGGG ACAGGGAGGGGGCTGCTGTTGCCCTCCAGGAGTGTTGGAGAGGGAACGAG AGCGAGGACGAGGGGGGCCTTGCCCGTGGATGCGGTCGGGAGTGGAGAAG GGTGGAGAGGGAAGCAGCTGGCGCTAACGGCAGTGTCGTCTGCAGCTGGA GCAGGAGTGGGTTTGTTGAGAGGAGAAAAGGAGGATGGTGGCGGCGACGA CCACGATTACGATTCTTGGGGAGACAATGACCGAGACGAGGACCAAGAAG TGGTCGATGTGGACGAGGAGGAGGTGGCAGAGGCGGCTCGTGGGCGCAAG CCTACCCCTCTGGTGGGACGACGACGGAAGGTGAGACCGACGAGGAGGAT GATAAGAATGAGGGGCCCGGCACATGAGGCGATTATGGAGCTTGGGTCTG CTAGGAGGAGTCCAGGCCGATCTGGCGGCGGGGATGGCAGCAGTAGTAGC AGTAGCTGGGGGAGGAGGGCGGAATTGTTTGGGGTGGACCCAGAGGCGAC ACGACCGGCATACGAGCTCGTCGATGAGAGCACACGGACGAGGGACTTGA ATCTTTTCTTGAAACGAGCGGCGGCTGAATTGCCAGAGAGGGATATGCAA GTGTTGAGTCTTGTGTATGGGTTGGAAGGGCAGGTGCCGATGAAGAAAGC GCAAGTAGCAGCAAAGTTGGGCACGTCTGTGGCGGTGGTGAGTAAAAGTG AGAAGCGGGCATTGAACAAGCTGAGAGAGATGTTGAACATCAAAGAGGAG GTGTAG back to top
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