NO15G01460, NO15G01460 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G01460
Unique Name	NO15G01460
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1772
Alignment location	chr15:410828..412599 -

Link to JBrowse

Properties


Property Name	Value
Description	CCR4-NOT transcription complex subunit 10

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:410828..412599 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR019734	TPR_repeat

Vocabulary: **Cellular Component**
Term	Definition
GO:0030014	CCR4-NOT complex

Homology

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: XP_005853792.1 (CCR4-NOT transcription complex subunit 10 [Nannochloropsis gaditana CCMP526] >EKU22565.1 CCR4-NOT transcription complex subunit 10 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 503.8 bits (1296), Expect = 6.200e-139
Identity = 317/514 (61.67%), Postives = 354/514 (68.87%), Query Frame = 0

Query:    1 MSCDSKASVASQAHAFYSIGKYENALECLQRL-VKMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSS-----------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASLPPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASF--NHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGRRRNGAVRDRLVRRVVGQGRHRRVVL 477
            MS   KAS+A QA AFY +GKYE ALECLQ+L ++ GG +D R+QGNLVLTEHAKGGFKRPL+++DRIT LRN+LK RS K G V  A R K+SLRLDAE      XXXXXXXXXXX S+LLYNLAAL+FHEKQYGASQ+IL+ALFARIEVLEE LAV VCFL LDVL+HS+RGNIHT KDRER S NTAA LAYLERPH F +    +S                                                                              XXXXXXXXXXXXXXXXXXXGNTLMGG DASLPPAG+ANVA LYLKANLEYLRQNY+KALKLLASC  GE    G   +AY NDMGCLH K GLH +ALQYFQ++VAS   + P S  G+    T    LLPGGRPLE DGRVLPH  CE+ YNTGLQL+++G+  QAFRCFENASL+FYNRPRVWLRMAECCV A+REE  RR G VRDRLVRRVVG+G HRR+VL
Sbjct:    1 MSGSGKASIACQARAFYGVGKYEKALECLQQLSMQPGGGDDPRLQGNLVLTEHAKGGFKRPLIIKDRITTLRNSLKTRSEKVGSVQGAFRAKESLRLDAE---DEDXXXXXXXXXXXXSVLLYNLAALNFHEKQYGASQHILHALFARIEVLEEPLAVQVCFLFLDVLLHSARGNIHTVKDRERLSHNTAALLAYLERPHAFSSTALAASEMEDKNGNGSAESLVGSGKGLETAEFTFRLHLYKAKVRLLLRDIKSSKKELKSALEIFQRELRPNPADPSASGKGGALXXXXXXXXXXXXXXXXXXXGNTLMGGYDASLPPAGVANVAGLYLKANLEYLRQNYRKALKLLASCHRGEDSAMG---AAYLNDMGCLHSKMGLHSVALQYFQRAVASSGQDRPASANGSPAGETPGMPLLPGGRPLETDGRVLPHTFCEIAYNTGLQLLILGRSVQAFRCFENASLVFYNRPRVWLRMAECCVHAYREEEGRREGPVRDRLVRRVVGRGPHRRLVL 508

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: EWM22463.1 (ccr4-not transcription complex subunit 10-like protein [Nannochloropsis gaditana])

HSP 1 Score: 503.8 bits (1296), Expect = 6.200e-139
Identity = 317/514 (61.67%), Postives = 354/514 (68.87%), Query Frame = 0

Query:    1 MSCDSKASVASQAHAFYSIGKYENALECLQRL-VKMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSS-----------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASLPPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASF--NHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGRRRNGAVRDRLVRRVVGQGRHRRVVL 477
            MS   KAS+A QA AFY +GKYE ALECLQ+L ++ GG +D R+QGNLVLTEHAKGGFKRPL+++DRIT LRN+LK RS K G V  A R K+SLRLDAE      XXXXXXXXXXX S+LLYNLAAL+FHEKQYGASQ+IL+ALFARIEVLEE LAV VCFL LDVL+HS+RGNIHT KDRER S NTAA LAYLERPH F +    +S                                                                              XXXXXXXXXXXXXXXXXXXGNTLMGG DASLPPAG+ANVA LYLKANLEYLRQNY+KALKLLASC  GE    G   +AY NDMGCLH K GLH +ALQYFQ++VAS   + P S  G+    T    LLPGGRPLE DGRVLPH  CE+ YNTGLQL+++G+  QAFRCFENASL+FYNRPRVWLRMAECCV A+REE  RR G VRDRLVRRVVG+G HRR+VL
Sbjct:    1 MSGSGKASIACQARAFYGVGKYEKALECLQQLSMQPGGGDDPRLQGNLVLTEHAKGGFKRPLIIKDRITTLRNSLKTRSEKVGSVQGAFRAKESLRLDAE---DEDXXXXXXXXXXXXSVLLYNLAALNFHEKQYGASQHILHALFARIEVLEEPLAVQVCFLFLDVLLHSARGNIHTVKDRERLSHNTAALLAYLERPHAFSSTALAASEMEDKNGNGSAESLVGSGKGLETAEFTFRLHLYKAKVRLLLRDIKSSKKELKSALEIFQRELRPNPADPSASGKGGALXXXXXXXXXXXXXXXXXXXGNTLMGGYDASLPPAGVANVAGLYLKANLEYLRQNYRKALKLLASCHRGEDSAMG---AAYLNDMGCLHSKMGLHSVALQYFQRAVASSGQDRPASANGSPAGETPGMPLLPGGRPLETDGRVLPHTFCEIAYNTGLQLLILGRSVQAFRCFENASLVFYNRPRVWLRMAECCVHAYREEEGRREGPVRDRLVRRVVGRGPHRRLVL 508

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: CBJ25843.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 235.0 bits (598), Expect = 5.300e-58
Identity = 216/562 (38.43%), Postives = 267/562 (47.51%), Query Frame = 0

Query:    9 VASQAHAFYSIGKYENALECLQRLVKMGG------------KEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARS------------------------GKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVD-----------------------ASLPPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGME-----GGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHR-----------------EEGRRRNGAV------------RDRLVRRVVGQGRHRRVVLP 478
            +A+QA + Y+ GKY  AL  L  L    G              D R Q NL L+EH   GF  P  +   + A+ + L AR+                                             XXXXXXXXX         S+LLYNL+AL F +KQYGA+Q +L  LF  +E L++ LA+H+C LLLDVL HS+RGN+HT  +  RFS  TAA LA+LERPH     +    XXXXXXXXXXXXXXXXXXXXXXXXX                                        L G  D                       + +PPAG+ N+AALYLKANLEYLR N++KALKLLASC G +G  E       V   Y+N+MGCLH K   H +AL YFQK++ +        G    +         GR    DG V P   CEV+YNTGLQL+L  KP +A RCFE A+LLF+NRP +WLRMAEC +A HR                   G + + A             R  L    VG+G+HRRV+LP
Sbjct:    1 MATQALSSYTAGKYSEALSHLSSLSVAPGSSGDAGGSSSDASNDFRAQHNLALSEHGARGFADPAKLESTLRAIHSRL-ARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHMEPLDDSLAIHICLLLLDVLCHSARGNLHTEDNLRRFSAQTAAVLAFLERPHA----LNXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELRGSGDXXXXXXXXXXXXXXXXXXXXXTFSPVPPAGVQNMAALYLKANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLKRHHVALHYFQKALEALG-----KGGEAGADVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKPEEALRCFERAALLFHNRPHLWLRMAECSIARHRLSSNGVGNSGSPFTTTSPVGSKPSSATGAAAGPDAAAGGRGPLPWTPVGKGQHRRVLLP 552

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: XP_002901762.1 (CCR4-NOT transcription complex subunit, putative [Phytophthora infestans T30-4] >EEY57152.1 CCR4-NOT transcription complex subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 179.1 bits (453), Expect = 3.500e-41
Identity = 137/495 (27.68%), Postives = 217/495 (43.84%), Query Frame = 0

Query:    4 DSKASVASQAHAFYSIGKYENALECLQRLV-KMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVF------CAPVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASL-----------PPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGRRRNGA-VRDRLVRRVVGQGRHRRVVLPVS 480
            D+K+S++ +A   ++ GKYE A++ L++LV ++  ++D +V+ N+ L   A G      + +     LR  L+     + P  AA  G+     D+                  T+ L YN AA  F  KQY  + ++L A+   ++ ++E +A+H  FL LDV++HSSRG + T ++R    +   + LA+LE+PH F         + L                                                                G         ++           P   + N  AL+LKANLEYL++NYKK +KLLASC       E    S   N+MGC+H++ G    A  YF +++ +      +     +S+S                       E++YN GL L+L G+ + AFRCF  +S LF+NRP++WLR+ ECC AA  +E +    A  +  L++ +VG G HRRV+LP S
Sbjct:    9 DNKSSLSHRAQQKFNAGKYEEAVDALEKLVEEIDPRQDLKVRHNVALARFAAGLDTPDKLQQALRQNLRTQLQEHDKNSKPASAATDGESEGTEDS----------GSFSIERETAYLRYNYAASLFLTKQYAQASSVLEAVMRNVDPIDENVAMHASFLYLDVILHSSRGCVSTERERAATIKKAQSILAFLEKPHRFNTVQEVAEHLVLRDANGNVVETETQKKNRWDVTEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIKTYDRGEAATSSSSLAMESEKTSSAIGHPCLVVQNSTALFLKANLEYLKKNYKKCIKLLASCT-----QEAVSESVLLNNMGCIHYQMGQRKAAQSYFARALQATTKATKMDAVVLASSSHH---------------------EIMYNNGLHLLLQGEYALAFRCFHESSRLFFNRPKLWLRLGECCTAAFAKEQKLAVVAGNKSGLIQGIVGSGSHRRVLLPTS 467

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: ETP47798.1 (hypothetical protein F442_06328 [Phytophthora parasitica P10297] >ETP47799.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 175.3 bits (443), Expect = 5.000e-40
Identity = 137/498 (27.51%), Postives = 218/498 (43.78%), Query Frame = 0

Query:    4 DSKASVASQAHAFYSIGKYENALECLQRLV-KMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASL-----------------PPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGR----RRNGAVRDRLVRRVVGQGRHRRVVLPVS 480
            D+K+S++ +A   ++ GKYE A++ L++LV ++  ++D +V+ N+ L   A G      + +     LR  L+     + P  +A  G+     D+                  T+ L YN AA  F  KQY  + ++L A+   ++ ++E +A+H  FL LDV++HSSRG + T ++R    +   + LA+LE+ H F     ++                                                                 T   G  A+                  P   + N  AL+LKANLEYL++NYKK +KLLASC       E    S   N+MGC+H++ G    A  YF +++ +      +     +S+S                       E++YN GL L+L G+ + AFRCF  +S LF+NRP++WLR+ ECC AA  +E +     RN   +  L++ +VG G HRRV+LP S
Sbjct:    9 DNKSSLSHRAQQKFNAGKYEEAVDALEKLVEEIDPRQDFKVRHNVALARFAAGLDTPDKLQQALRQNLRTQLQEHDKNSKPASSAADGESEETEDS----------GSFSIERETAYLRYNYAASLFLTKQYAQASSVLEAVMRNVDPIDENVAMHASFLYLDVILHSSRGCVSTERERVATIKKAQSILAFLEKSHRFNTVQEVADHLVQRDANGNVVETEAQKKNRWDVTEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIKTYDRGEAATSSSLLAMESEKTSSAIGHPCLVVQNSTALFLKANLEYLKKNYKKCIKLLASCT-----QEAVSESVLLNNMGCIHYQMGQRKAAQSYFARALQATTKATKMDAVVIASSSHH---------------------EIMYNNGLHLLLQGEYALAFRCFHESSRLFFNRPKLWLRLGECCTAAFAKEQKLAVVARN---KSGLIQGIVGSGSHRRVLLPTS 467

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: ETP47801.1 (hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 175.3 bits (443), Expect = 5.000e-40
Identity = 137/498 (27.51%), Postives = 218/498 (43.78%), Query Frame = 0

Query:    4 DSKASVASQAHAFYSIGKYENALECLQRLV-KMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASL-----------------PPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGR----RRNGAVRDRLVRRVVGQGRHRRVVLPVS 480
            D+K+S++ +A   ++ GKYE A++ L++LV ++  ++D +V+ N+ L   A G      + +     LR  L+     + P  +A  G+     D+                  T+ L YN AA  F  KQY  + ++L A+   ++ ++E +A+H  FL LDV++HSSRG + T ++R    +   + LA+LE+ H F     ++                                                                 T   G  A+                  P   + N  AL+LKANLEYL++NYKK +KLLASC       E    S   N+MGC+H++ G    A  YF +++ +      +     +S+S                       E++YN GL L+L G+ + AFRCF  +S LF+NRP++WLR+ ECC AA  +E +     RN   +  L++ +VG G HRRV+LP S
Sbjct:    9 DNKSSLSHRAQQKFNAGKYEEAVDALEKLVEEIDPRQDFKVRHNVALARFAAGLDTPDKLQQALRQNLRTQLQEHDKNSKPASSAADGESEETEDS----------GSFSIERETAYLRYNYAASLFLTKQYAQASSVLEAVMRNVDPIDENVAMHASFLYLDVILHSSRGCVSTERERVATIKKAQSILAFLEKSHRFNTVQEVADHLVQRDANGNVVETEAQKKNRWDVTEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIKTYDRGEAATSSSLLAMESEKTSSAIGHPCLVVQNSTALFLKANLEYLKKNYKKCIKLLASCT-----QEAVSESVLLNNMGCIHYQMGQRKAAQSYFARALQATTKATKMDAVVIASSSHH---------------------EIMYNNGLHLLLQGEYALAFRCFHESSRLFFNRPKLWLRLGECCTAAFAKEQKLAVVARN---KSGLIQGIVGSGSHRRVLLPTS 467

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: XP_008891724.1 (hypothetical protein PPTG_02404 [Phytophthora parasitica INRA-310] >XP_008891726.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETI50088.1 hypothetical protein F443_06287 [Phytophthora parasitica P1569] >ETI50089.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK89979.1 hypothetical protein L915_06162 [Phytophthora parasitica] >ETK89980.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL43380.1 hypothetical protein L916_06097 [Phytophthora parasitica] >ETL43381.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL96564.1 hypothetical protein L917_05974 [Phytophthora parasitica] >ETL96565.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM49718.1 hypothetical protein L914_06095 [Phytophthora parasitica] >ETM49719.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN22475.1 hypothetical protein PPTG_02404 [Phytophthora parasitica INRA-310] >ETN22476.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETP19879.1 hypothetical protein F441_06289 [Phytophthora parasitica CJ01A1] >ETP19880.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 174.9 bits (442), Expect = 6.600e-40
Identity = 136/495 (27.47%), Postives = 217/495 (43.84%), Query Frame = 0

Query:    4 DSKASVASQAHAFYSIGKYENALECLQRLV-KMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASL-----------------PPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGRRRNGA-VRDRLVRRVVGQGRHRRVVLPVS 480
            D+K+S++ +A   ++ GKYE A++ L++LV ++  ++D +V+ N+ L   A G      + +     LR  L+     + P  +A  G+     D+                  T+ L YN AA  F  KQY  + ++L A+   ++ ++E +A+H  FL LDV++HSSRG + T ++R    +   + LA+LE+ H F     ++                                                                 T   G  A+                  P   + N  AL+LKANLEYL++NYKK +KLLASC       E    S   N+MGC+H++ G    A  YF +++ +      +     +S+S                       E++YN GL L+L G+ + AFRCF  +S LF+NRP++WLR+ ECC AA  +E +    A  +  L++ +VG G HRRV+LP S
Sbjct:    9 DNKSSLSHRAQQKFNAGKYEEAVDALEKLVEEIDPRQDFKVRHNVALARFAAGLDTPDKLQQALRQNLRTQLQEHDKNSKPASSAADGESEETEDS----------GSFSIERETAYLRYNYAASLFLTKQYAQASSVLEAVMRNVDPIDENVAMHASFLYLDVILHSSRGCVSTERERVATIKKAQSILAFLEKSHRFNTVQEVADHLVQRDANGNVVETEAQKKNRWDVTEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIKTYDRGEAATSSSLLAMESEKTSSAIGHPCLVVQNSTALFLKANLEYLKKNYKKCIKLLASCT-----QEAVSESVLLNNMGCIHYQMGQRKAAQSYFARALQATTKATKMDAVVIASSSHH---------------------EIMYNNGLHLLLQGEYALAFRCFHESSRLFFNRPKLWLRLGECCTAAFAKEQKLAVVAGNKSGLIQGIVGSGSHRRVLLPTS 467

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: XP_008891725.1 (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >ETI50091.1 hypothetical protein, variant 3 [Phytophthora parasitica P1569] >ETK89982.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETL43383.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETL96567.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETM49721.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETN22478.1 hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >ETP19882.1 hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 174.9 bits (442), Expect = 6.600e-40
Identity = 136/495 (27.47%), Postives = 217/495 (43.84%), Query Frame = 0

Query:    4 DSKASVASQAHAFYSIGKYENALECLQRLV-KMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASL-----------------PPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGRRRNGA-VRDRLVRRVVGQGRHRRVVLPVS 480
            D+K+S++ +A   ++ GKYE A++ L++LV ++  ++D +V+ N+ L   A G      + +     LR  L+     + P  +A  G+     D+                  T+ L YN AA  F  KQY  + ++L A+   ++ ++E +A+H  FL LDV++HSSRG + T ++R    +   + LA+LE+ H F     ++                                                                 T   G  A+                  P   + N  AL+LKANLEYL++NYKK +KLLASC       E    S   N+MGC+H++ G    A  YF +++ +      +     +S+S                       E++YN GL L+L G+ + AFRCF  +S LF+NRP++WLR+ ECC AA  +E +    A  +  L++ +VG G HRRV+LP S
Sbjct:    9 DNKSSLSHRAQQKFNAGKYEEAVDALEKLVEEIDPRQDFKVRHNVALARFAAGLDTPDKLQQALRQNLRTQLQEHDKNSKPASSAADGESEETEDS----------GSFSIERETAYLRYNYAASLFLTKQYAQASSVLEAVMRNVDPIDENVAMHASFLYLDVILHSSRGCVSTERERVATIKKAQSILAFLEKSHRFNTVQEVADHLVQRDANGNVVETEAQKKNRWDVTEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIKTYDRGEAATSSSLLAMESEKTSSAIGHPCLVVQNSTALFLKANLEYLKKNYKKCIKLLASCT-----QEAVSESVLLNNMGCIHYQMGQRKAAQSYFARALQATTKATKMDAVVIASSSHH---------------------EIMYNNGLHLLLQGEYALAFRCFHESSRLFFNRPKLWLRLGECCTAAFAKEQKLAVVAGNKSGLIQGIVGSGSHRRVLLPTS 467

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: ETO78822.1 (hypothetical protein F444_06345 [Phytophthora parasitica P1976] >ETO78823.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976])

HSP 1 Score: 174.9 bits (442), Expect = 6.600e-40
Identity = 136/495 (27.47%), Postives = 217/495 (43.84%), Query Frame = 0

Query:    4 DSKASVASQAHAFYSIGKYENALECLQRLV-KMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASL-----------------PPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGRRRNGA-VRDRLVRRVVGQGRHRRVVLPVS 480
            D+K+S++ +A   ++ GKYE A++ L++LV ++  ++D +V+ N+ L   A G      + +     LR  L+     + P  +A  G+     D+                  T+ L YN AA  F  KQY  + ++L A+   ++ ++E +A+H  FL LDV++HSSRG + T ++R    +   + LA+LE+ H F     ++                                                                 T   G  A+                  P   + N  AL+LKANLEYL++NYKK +KLLASC       E    S   N+MGC+H++ G    A  YF +++ +      +     +S+S                       E++YN GL L+L G+ + AFRCF  +S LF+NRP++WLR+ ECC AA  +E +    A  +  L++ +VG G HRRV+LP S
Sbjct:    9 DNKSSLSHRAQQKFNAGKYEEAVDALEKLVEEIDPRQDFKVRHNVALARFAAGLDTPDKLQQALRQNLRTQLQEHDKNSKPASSAADGESEETEDS----------GSFSIERETAYLRYNYAASLFLTKQYAQASSVLEAVMRNVDPIDENVAMHASFLYLDVILHSSRGCVSTERERVATIKKAQSILAFLEKSHRFNTVQEVADHLVQRDANGNVVETEAQKKNRWDVTEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIKTYDRGEAATSSSLLAMESEKTSSAIGHPCLVVQNSTALFLKANLEYLKKNYKKCIKLLASCT-----QEAVSESVLLNNMGCIHYQMGQRKAAQSYFARALQATTKATKMDAVVITSSSHH---------------------EIMYNNGLHLLLQGEYALAFRCFHESSRLFFNRPKLWLRLGECCTAAFAKEQKLAVVAGNKSGLIQGIVGSGSHRRVLLPTS 467

[Close]

BLAST of NO15G01460 vs. NCBI_GenBank
Match: ETO78825.1 (hypothetical protein, variant 3 [Phytophthora parasitica P1976])

HSP 1 Score: 174.9 bits (442), Expect = 6.600e-40
Identity = 136/495 (27.47%), Postives = 217/495 (43.84%), Query Frame = 0

Query:    4 DSKASVASQAHAFYSIGKYENALECLQRLV-KMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEXXXXXXXXXXXXXXXXXTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTLMGGVDASL-----------------PPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGRRRNGA-VRDRLVRRVVGQGRHRRVVLPVS 480
            D+K+S++ +A   ++ GKYE A++ L++LV ++  ++D +V+ N+ L   A G      + +     LR  L+     + P  +A  G+     D+                  T+ L YN AA  F  KQY  + ++L A+   ++ ++E +A+H  FL LDV++HSSRG + T ++R    +   + LA+LE+ H F     ++                                                                 T   G  A+                  P   + N  AL+LKANLEYL++NYKK +KLLASC       E    S   N+MGC+H++ G    A  YF +++ +      +     +S+S                       E++YN GL L+L G+ + AFRCF  +S LF+NRP++WLR+ ECC AA  +E +    A  +  L++ +VG G HRRV+LP S
Sbjct:    9 DNKSSLSHRAQQKFNAGKYEEAVDALEKLVEEIDPRQDFKVRHNVALARFAAGLDTPDKLQQALRQNLRTQLQEHDKNSKPASSAADGESEETEDS----------GSFSIERETAYLRYNYAASLFLTKQYAQASSVLEAVMRNVDPIDENVAMHASFLYLDVILHSSRGCVSTERERVATIKKAQSILAFLEKSHRFNTVQEVADHLVQRDANGNVVETEAQKKNRWDVTEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIKTYDRGEAATSSSLLAMESEKTSSAIGHPCLVVQNSTALFLKANLEYLKKNYKKCIKLLASCT-----QEAVSESVLLNNMGCIHYQMGQRKAAQSYFARALQATTKATKMDAVVITSSSHH---------------------EIMYNNGLHLLLQGEYALAFRCFHESSRLFFNRPKLWLRLGECCTAAFAKEQKLAVVAGNKSGLIQGIVGSGSHRRVLLPTS 467

The following BLAST results are available for this feature:

BLAST of NO15G01460 vs. NCBI_GenBank

BLAST of NO15G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005853792.1	6.200e-139	61.67	CCR4-NOT transcription complex subunit 10 [Nannoch...	[more]
EWM22463.1	6.200e-139	61.67	ccr4-not transcription complex subunit 10-like pro...	[more]
CBJ25843.1	5.300e-58	38.43	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_002901762.1	3.500e-41	27.68	CCR4-NOT transcription complex subunit, putative [...	[more]
ETP47798.1	5.000e-40	27.51	hypothetical protein F442_06328 [Phytophthora para...	[more]
ETP47801.1	5.000e-40	27.51	hypothetical protein, variant 3 [Phytophthora para...	[more]
XP_008891724.1	6.600e-40	27.47	hypothetical protein PPTG_02404 [Phytophthora para...	[more]
XP_008891725.1	6.600e-40	27.47	hypothetical protein, variant 3 [Phytophthora para...	[more]
ETO78822.1	6.600e-40	27.47	hypothetical protein F444_06345 [Phytophthora para...	[more]
ETO78825.1	6.600e-40	27.47	hypothetical protein, variant 3 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL145	nonsL145	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR006	ncniR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR063	ngnoR063	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO15G01460.1	NO15G01460.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO15G01460.1	NO15G01460.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO15G01460 ID=NO15G01460|Name=NO15G01460|organism=Nannochloropsis oceanica|type=gene|length=1772bp
ATGAGCTGTGACAGTAAGGCTTCAGTCGCGAGTCAGGCGCACGCCTTTTA
CAGCATTGGCAAGTACGAGAATGCTTTGGAATGCCTGCAGCGTCTTGTGA
AGATGGGAGGCAAGGAGGACTCCCGCGTTCAAGGCAACCTCGTCTTGACC
GAGCATGCCAAGGGCGGATTCAAACGGCCTCTGGTGGTGCGGGATCGCAT
TACAGCTTTGCGTAATGCCCTCAAGGCTAGGTCAGGCAAAGCGGGGCCGG
TTCCCGCAGCGCTGAGGGGCAAGGATTCGTTGCGTTTGGACGCAGAGGAT
GTCGAGGATGATGAGGATGACGAGGAGGCGGACGACACCGACACGGACAC
CTCTATTCTCCTTTATAATCTTGCCGCGTTACATTTCCACGAAAAGCAAT
ACGGAGCGTCCCAAAATATTTTGTATGCGCTGTTTGCACGGATCGAGGTC
TTGGAGGAAGGCTTGGCCGTGCATGTCTGCTTCCTCCTCCTCGACGTCCT
CATACACAGCTCCCGCGGCAACATCCACACCAACAAGGACCGAGAGCGTT
TCTCCCAAAATACAGCCGCACCTCTAGCCTACCTTGAAAGGCCGCATGTG
TTCTGTGCCCCTGTCGCCTTGAGCTCGGAAACGGAGGATAGCAGCACCAC
CACCAGTAGCAGCGGTGGTGGTAGCGCGAGCAGCAGCAGCGGCAGAAGTC
TCGAGATGGCCGAGTTCAATTTTCGACTGCATTTGTACAAGGCGAAGgta
agattatctttgggagaaatcaaatcctcgaaaaaagcattgaagggtgc
cttggaaattttccaaagggagttgagaccggatgccttggccgcctcga
ggactaagggggggagcagCAGTGGAGGGGGGATTCTGATGACGACGAAG
CGGCGGCGGCTGCTGCCTCTGCTACGGCGATCGCGGGGAATACATTGATG
GGGGGCGTTGATGCATCGCTACCTCCGGCGGGGATGGCAAATGTGGCAGg
tatgttcatttcctcccttcctcccttctacacgcctttatcccctttct
cacgctcacccttacacacacacacgcacacacttcccaatttttctctt
ttcataacagCGCTTTATTTGAAAGCTAATCTAGAGTATTTGCGACAGAA
TTACAAAAAGGCCCTCAAGCTCCTTGCATCATGCCAAGGGGGGGAGGGAG
GGATGGAGGGAGGGGTAACCTCCGCCTACTACAACGACATGGGCTGCCTG
CATTTCAAGACCGGCCTCCACTTCCTTGCGCTTCAATACTTCCAAAAATC
CGTCGCCTCTTTCAACCACCCACTATCCCTAACCGGCACCAACGGCAGCA
GCACCAGCACCAGCAGCTTGCTACCAGGTGGTCGTCCATTGGAAATTGAC
GGTCGAGTCCTCCCTCACGCATTGTGTGAAGTCGTTTACAACACAGGATT
GCAGTTGATGTTGATGGGTAAGCCTTCACAGGCGTTTCGGTGCTTTGAAA
ATGCCTCTCTTTTGTTCTATAATCGCCCTCGGGTTTGGTTGAGAATGGCG
GAGTGTTGTGTCGCTGCGCATAGGGAAGAGGGACGACGACGAAACGGGGC
TGTCAGAGATCGGTTGGTCAGACGGGTGGTGGGACAAGGGAGACATCGTC
GTGTGGTGTTGCCAGTGTCAAACGACCCACAAGATGCAGCAGCAGCAGCG
GCGGCGGCAGTTGATGCGGGAGGAAGGGTGATGGGAGGAGGGGAGGGGGG
GTACGAGGGCAGTGCACGTTAG

protein sequence of NO15G01460.1

>NO15G01460.1-protein ID=NO15G01460.1-protein|Name=NO15G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MSCDSKASVASQAHAFYSIGKYENALECLQRLVKMGGKEDSRVQGNLVLT
EHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAED
VEDDEDDEEADDTDTDTSILLYNLAALHFHEKQYGASQNILYALFARIEV
LEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHV
FCAPVALSSETEDSSTTTSSSGGGSASSSSGRSLEMAEFNFRLHLYKAKQ
WRGDSDDDEAAAAAASATAIAGNTLMGGVDASLPPAGMANVAALYLKANL
EYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLAL
QYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEV
VYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEG
RRRNGAVRDRLVRRVVGQGRHRRVVLPVSNDPQDAAAAAAAAVDAGGRVM
GGGEGGYEGSAR*

Synonyms

Publications