NO15G01460.1, NO15G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01460.1
Unique NameNO15G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1539
Alignment locationchr15:410828..412599 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:410828..412599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01460.1 vs.
Match: XP_005853792.1 (CCR4-NOT transcription complex subunit 10 [Nannochloropsis gaditana CCMP526]; EKU22565.1 CCR4-NOT transcription complex subunit 10 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 579.7 bits (1493), Expect = 8.800e-162
Identity = 337/553 (60.94%), Postives = 383/553 (69.26%), Query Frame = 0 
Query:    1 MSCDSKASVASQAHAFYSIGKYENALECLQRL-VKMGGKEDSRVQGNLVLTEHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAEDVEDDEDDEEADDTDTDTSILLYNLAALHFHEKQYGASQNILYALFARIEVLEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHVFCAPVALSSETEDSSTTTSSSGGGSASS--SSGRSLEMAEFNFRLHLYKAK------------------------QWRGDSDDDEAA---------------AAAASATAIAGNTLMGGVDASLPPAGMANVAALYLKANLEYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLALQYFQKSVASF--NHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEVVYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEGRRRNGAVRDRLVRRVVGQGRHRRVVLPVSNDPQDAAAAAAAAVDAGGRVMGGGEGGYEG 510
            MS   KAS+A QA AFY +GKYE ALECLQ+L ++ GG +D R+QGNLVLTEHAKGGFKRPL+++DRIT LRN+LK RS K G V  A R K+SLRLDAED   ++ DEEADDT+TDTS+LLYNLAAL+FHEKQYGASQ+IL+ALFARIEVLEE LAV VCFL LDVL+HS+RGNIHT KDRER S NTAA LAYLERPH F +    +SE ED       +G GSA S   SG+ LE AEF FRLHLYKAK                        + R +  D  A+               A AAS    AGNTLMGG DASLPPAG+ANVA LYLKANLEYLRQNY+KALKLLASC  GE    G   +AY NDMGCLH K GLH +ALQYFQ++VAS   + P S  G+    T    LLPGGRPLE DGRVLPH  CE+ YNTGLQL+++G+  QAFRCFENASL+FYNRPRVWLRMAECCV A+REE  RR G VRDRLVRRVVG+G HRR+VL      +          D  G   GGG  G  G
Sbjct:    1 MSGSGKASIACQARAFYGVGKYEKALECLQQLSMQPGGGDDPRLQGNLVLTEHAKGGFKRPLIIKDRITTLRNSLKTRSEKVGSVQGAFRAKESLRLDAED---EDGDEEADDTETDTSVLLYNLAALNFHEKQYGASQHILHALFARIEVLEEPLAVQVCFLFLDVLLHSARGNIHTVKDRERLSHNTAALLAYLERPHAFSSTALAASEMED------KNGNGSAESLVGSGKGLETAEFTFRLHLYKAKVRLLLRDIKSSKKELKSALEIFQRELRPNPADPSASGKGGALGGGDSDDEVATAASTATTAGNTLMGGYDASLPPAGVANVAGLYLKANLEYLRQNYRKALKLLASCHRGEDSAMG---AAYLNDMGCLHSKMGLHSVALQYFQRAVASSGQDRPASANGSPAGETPGMPLLPGGRPLETDGRVLPHTFCEIAYNTGLQLLILGRSVQAFRCFENASLVFYNRPRVWLRMAECCVHAYREEEGRREGPVRDRLVRRVVGRGPHRRLVLATR---RGGDCREFQGGDGAGGARGGGLDGSVG 538
The following BLAST results are available for this feature:
BLAST of NO15G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853792.18.800e-16260.94CCR4-NOT transcription complex subunit 10 [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01460NO15G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01460.1NO15G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01460.1.cds1NO15G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01460.1.cds2NO15G01460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01460.1.cds3NO15G01460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01460.1 ID=NO15G01460.1|Name=NO15G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp
ATGAGCTGTGACAGTAAGGCTTCAGTCGCGAGTCAGGCGCACGCCTTTTA
CAGCATTGGCAAGTACGAGAATGCTTTGGAATGCCTGCAGCGTCTTGTGA
AGATGGGAGGCAAGGAGGACTCCCGCGTTCAAGGCAACCTCGTCTTGACC
GAGCATGCCAAGGGCGGATTCAAACGGCCTCTGGTGGTGCGGGATCGCAT
TACAGCTTTGCGTAATGCCCTCAAGGCTAGGTCAGGCAAAGCGGGGCCGG
TTCCCGCAGCGCTGAGGGGCAAGGATTCGTTGCGTTTGGACGCAGAGGAT
GTCGAGGATGATGAGGATGACGAGGAGGCGGACGACACCGACACGGACAC
CTCTATTCTCCTTTATAATCTTGCCGCGTTACATTTCCACGAAAAGCAAT
ACGGAGCGTCCCAAAATATTTTGTATGCGCTGTTTGCACGGATCGAGGTC
TTGGAGGAAGGCTTGGCCGTGCATGTCTGCTTCCTCCTCCTCGACGTCCT
CATACACAGCTCCCGCGGCAACATCCACACCAACAAGGACCGAGAGCGTT
TCTCCCAAAATACAGCCGCACCTCTAGCCTACCTTGAAAGGCCGCATGTG
TTCTGTGCCCCTGTCGCCTTGAGCTCGGAAACGGAGGATAGCAGCACCAC
CACCAGTAGCAGCGGTGGTGGTAGCGCGAGCAGCAGCAGCGGCAGAAGTC
TCGAGATGGCCGAGTTCAATTTTCGACTGCATTTGTACAAGGCGAAGCAG
TGGAGGGGGGATTCTGATGACGACGAAGCGGCGGCGGCTGCTGCCTCTGC
TACGGCGATCGCGGGGAATACATTGATGGGGGGCGTTGATGCATCGCTAC
CTCCGGCGGGGATGGCAAATGTGGCAGCGCTTTATTTGAAAGCTAATCTA
GAGTATTTGCGACAGAATTACAAAAAGGCCCTCAAGCTCCTTGCATCATG
CCAAGGGGGGGAGGGAGGGATGGAGGGAGGGGTAACCTCCGCCTACTACA
ACGACATGGGCTGCCTGCATTTCAAGACCGGCCTCCACTTCCTTGCGCTT
CAATACTTCCAAAAATCCGTCGCCTCTTTCAACCACCCACTATCCCTAAC
CGGCACCAACGGCAGCAGCACCAGCACCAGCAGCTTGCTACCAGGTGGTC
GTCCATTGGAAATTGACGGTCGAGTCCTCCCTCACGCATTGTGTGAAGTC
GTTTACAACACAGGATTGCAGTTGATGTTGATGGGTAAGCCTTCACAGGC
GTTTCGGTGCTTTGAAAATGCCTCTCTTTTGTTCTATAATCGCCCTCGGG
TTTGGTTGAGAATGGCGGAGTGTTGTGTCGCTGCGCATAGGGAAGAGGGA
CGACGACGAAACGGGGCTGTCAGAGATCGGTTGGTCAGACGGGTGGTGGG
ACAAGGGAGACATCGTCGTGTGGTGTTGCCAGTGTCAAACGACCCACAAG
ATGCAGCAGCAGCAGCGGCGGCGGCAGTTGATGCGGGAGGAAGGGTGATG
GGAGGAGGGGAGGGGGGGTACGAGGGCAGTGCACGTTAG
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protein sequence of NO15G01460.1

>NO15G01460.1-protein ID=NO15G01460.1-protein|Name=NO15G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MSCDSKASVASQAHAFYSIGKYENALECLQRLVKMGGKEDSRVQGNLVLT
EHAKGGFKRPLVVRDRITALRNALKARSGKAGPVPAALRGKDSLRLDAED
VEDDEDDEEADDTDTDTSILLYNLAALHFHEKQYGASQNILYALFARIEV
LEEGLAVHVCFLLLDVLIHSSRGNIHTNKDRERFSQNTAAPLAYLERPHV
FCAPVALSSETEDSSTTTSSSGGGSASSSSGRSLEMAEFNFRLHLYKAKQ
WRGDSDDDEAAAAAASATAIAGNTLMGGVDASLPPAGMANVAALYLKANL
EYLRQNYKKALKLLASCQGGEGGMEGGVTSAYYNDMGCLHFKTGLHFLAL
QYFQKSVASFNHPLSLTGTNGSSTSTSSLLPGGRPLEIDGRVLPHALCEV
VYNTGLQLMLMGKPSQAFRCFENASLLFYNRPRVWLRMAECCVAAHREEG
RRRNGAVRDRLVRRVVGQGRHRRVVLPVSNDPQDAAAAAAAAVDAGGRVM
GGGEGGYEGSAR*
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mRNA from alignment at chr15:410828..412599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01460.1 ID=NO15G01460.1|Name=NO15G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at chr15:410828..412599- (Nannochloropsis oceanica)
ATGAGCTGTGACAGTAAGGCTTCAGTCGCGAGTCAGGCGCACGCCTTTTA
CAGCATTGGCAAGTACGAGAATGCTTTGGAATGCCTGCAGCGTCTTGTGA
AGATGGGAGGCAAGGAGGACTCCCGCGTTCAAGGCAACCTCGTCTTGACC
GAGCATGCCAAGGGCGGATTCAAACGGCCTCTGGTGGTGCGGGATCGCAT
TACAGCTTTGCGTAATGCCCTCAAGGCTAGGTCAGGCAAAGCGGGGCCGG
TTCCCGCAGCGCTGAGGGGCAAGGATTCGTTGCGTTTGGACGCAGAGGAT
GTCGAGGATGATGAGGATGACGAGGAGGCGGACGACACCGACACGGACAC
CTCTATTCTCCTTTATAATCTTGCCGCGTTACATTTCCACGAAAAGCAAT
ACGGAGCGTCCCAAAATATTTTGTATGCGCTGTTTGCACGGATCGAGGTC
TTGGAGGAAGGCTTGGCCGTGCATGTCTGCTTCCTCCTCCTCGACGTCCT
CATACACAGCTCCCGCGGCAACATCCACACCAACAAGGACCGAGAGCGTT
TCTCCCAAAATACAGCCGCACCTCTAGCCTACCTTGAAAGGCCGCATGTG
TTCTGTGCCCCTGTCGCCTTGAGCTCGGAAACGGAGGATAGCAGCACCAC
CACCAGTAGCAGCGGTGGTGGTAGCGCGAGCAGCAGCAGCGGCAGAAGTC
TCGAGATGGCCGAGTTCAATTTTCGACTGCATTTGTACAAGGCGAAGGTA
AGATTATCTTTGGGAGAAATCAAATCCTCGAAAAAAGCATTGAAGGGTGC
CTTGGAAATTTTCCAAAGGGAGTTGAGACCGGATGCCTTGGCCGCCTCGA
GGACTAAGGGGGGGAGCAGCAGTGGAGGGGGGATTCTGATGACGACGAAG
CGGCGGCGGCTGCTGCCTCTGCTACGGCGATCGCGGGGAATACATTGATG
GGGGGCGTTGATGCATCGCTACCTCCGGCGGGGATGGCAAATGTGGCAGG
TATGTTCATTTCCTCCCTTCCTCCCTTCTACACGCCTTTATCCCCTTTCT
CACGCTCACCCTTACACACACACACGCACACACTTCCCAATTTTTCTCTT
TTCATAACAGCGCTTTATTTGAAAGCTAATCTAGAGTATTTGCGACAGAA
TTACAAAAAGGCCCTCAAGCTCCTTGCATCATGCCAAGGGGGGGAGGGAG
GGATGGAGGGAGGGGTAACCTCCGCCTACTACAACGACATGGGCTGCCTG
CATTTCAAGACCGGCCTCCACTTCCTTGCGCTTCAATACTTCCAAAAATC
CGTCGCCTCTTTCAACCACCCACTATCCCTAACCGGCACCAACGGCAGCA
GCACCAGCACCAGCAGCTTGCTACCAGGTGGTCGTCCATTGGAAATTGAC
GGTCGAGTCCTCCCTCACGCATTGTGTGAAGTCGTTTACAACACAGGATT
GCAGTTGATGTTGATGGGTAAGCCTTCACAGGCGTTTCGGTGCTTTGAAA
ATGCCTCTCTTTTGTTCTATAATCGCCCTCGGGTTTGGTTGAGAATGGCG
GAGTGTTGTGTCGCTGCGCATAGGGAAGAGGGACGACGACGAAACGGGGC
TGTCAGAGATCGGTTGGTCAGACGGGTGGTGGGACAAGGGAGACATCGTC
GTGTGGTGTTGCCAGTGTCAAACGACCCACAAGATGCAGCAGCAGCAGCG
GCGGCGGCAGTTGATGCGGGAGGAAGGGTGATGGGAGGAGGGGAGGGGGG
GTACGAGGGCAGTGCACGTTAG
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Coding sequence (CDS) from alignment at chr15:410828..412599-

>NO15G01460.1 ID=NO15G01460.1|Name=NO15G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr15:410828..412599- (Nannochloropsis oceanica)
ATGAGCTGTGACAGTAAGGCTTCAGTCGCGAGTCAGGCGCACGCCTTTTA
CAGCATTGGCAAGTACGAGAATGCTTTGGAATGCCTGCAGCGTCTTGTGA
AGATGGGAGGCAAGGAGGACTCCCGCGTTCAAGGCAACCTCGTCTTGACC
GAGCATGCCAAGGGCGGATTCAAACGGCCTCTGGTGGTGCGGGATCGCAT
TACAGCTTTGCGTAATGCCCTCAAGGCTAGGTCAGGCAAAGCGGGGCCGG
TTCCCGCAGCGCTGAGGGGCAAGGATTCGTTGCGTTTGGACGCAGAGGAT
GTCGAGGATGATGAGGATGACGAGGAGGCGGACGACACCGACACGGACAC
CTCTATTCTCCTTTATAATCTTGCCGCGTTACATTTCCACGAAAAGCAAT
ACGGAGCGTCCCAAAATATTTTGTATGCGCTGTTTGCACGGATCGAGGTC
TTGGAGGAAGGCTTGGCCGTGCATGTCTGCTTCCTCCTCCTCGACGTCCT
CATACACAGCTCCCGCGGCAACATCCACACCAACAAGGACCGAGAGCGTT
TCTCCCAAAATACAGCCGCACCTCTAGCCTACCTTGAAAGGCCGCATGTG
TTCTGTGCCCCTGTCGCCTTGAGCTCGGAAACGGAGGATAGCAGCACCAC
CACCAGTAGCAGCGGTGGTGGTAGCGCGAGCAGCAGCAGCGGCAGAAGTC
TCGAGATGGCCGAGTTCAATTTTCGACTGCATTTGTACAAGGCGAAGCAG
TGGAGGGGGGATTCTGATGACGACGAAGCGGCGGCGGCTGCTGCCTCTGC
TACGGCGATCGCGGGGAATACATTGATGGGGGGCGTTGATGCATCGCTAC
CTCCGGCGGGGATGGCAAATGTGGCAGCGCTTTATTTGAAAGCTAATCTA
GAGTATTTGCGACAGAATTACAAAAAGGCCCTCAAGCTCCTTGCATCATG
CCAAGGGGGGGAGGGAGGGATGGAGGGAGGGGTAACCTCCGCCTACTACA
ACGACATGGGCTGCCTGCATTTCAAGACCGGCCTCCACTTCCTTGCGCTT
CAATACTTCCAAAAATCCGTCGCCTCTTTCAACCACCCACTATCCCTAAC
CGGCACCAACGGCAGCAGCACCAGCACCAGCAGCTTGCTACCAGGTGGTC
GTCCATTGGAAATTGACGGTCGAGTCCTCCCTCACGCATTGTGTGAAGTC
GTTTACAACACAGGATTGCAGTTGATGTTGATGGGTAAGCCTTCACAGGC
GTTTCGGTGCTTTGAAAATGCCTCTCTTTTGTTCTATAATCGCCCTCGGG
TTTGGTTGAGAATGGCGGAGTGTTGTGTCGCTGCGCATAGGGAAGAGGGA
CGACGACGAAACGGGGCTGTCAGAGATCGGTTGGTCAGACGGGTGGTGGG
ACAAGGGAGACATCGTCGTGTGGTGTTGCCAGTGTCAAACGACCCACAAG
ATGCAGCAGCAGCAGCGGCGGCGGCAGTTGATGCGGGAGGAAGGGTGATG
GGAGGAGGGGAGGGGGGGTACGAGGGCAGTGCACGTTAG
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Synonyms
Publications