NO15G01440, NO15G01440 (gene) Nannochloropsis oceanica

Overview
NameNO15G01440
Unique NameNO15G01440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1692
Alignment locationchr15:408023..409714 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:408023..409714 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G01440 vs. NCBI_GenBank
Match: XP_005853794.1 (hypoxia-inducible factor alpha subunit [Nannochloropsis gaditana CCMP526] >EKU22567.1 hypoxia-inducible factor alpha subunit [Nannochloropsis gaditana CCMP526] >EWM22423.1 hypothetical protein Naga_100011g64 [Nannochloropsis gaditana])

HSP 1 Score: 422.2 bits (1084), Expect = 2.000e-114
Identity = 242/453 (53.42%), Postives = 284/453 (62.69%), Query Frame = 0 
Query:    1 MNRTTPIRSSTRRAAIAAQRTAVAPSSPPCTPFSKGLKITSSGTDAAAAVDGQEPQPHLLRALSTKNRSSVQLDFGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDSGIP-------FQIDFSSYVLKLQIQDLNEARQAVAHARRLRRPLLLQGLLTETVKNYTPDHLQLLPEDVKVCSDDKSGIGFQPLRDWGVAPKRLRKATXXXXXXXXXXXXXXTGEE--------------------SIPYNWGRIASIMSEKAPQARLWTRFMQDDLASFRASTGHTALASFAASVFEGRSPMSCNVIVTGNAAPTASGRRFELKSDAHQDEYDNFMLVSSGAKIWALASLTEEQVLKGRKTKGKLSSSFRLDAVDRTKNRTREEHEIAGCFETVWMGPGDVLYNPAWVWHQVNSEPQTLAYSIMHTT--NGKEEKAG 425
            M  +T  RS   R   AA+RT ++ S PPCTPF   L I S     AAA     P  H  +A + KN S V+LDF                                                 S +P        ++D SS+VLKL+ QD+ EAR+AV +AR  +RPLLL+GL  ETVK++TPD LQ LPEDVKVC+DDK+GIGFQPLRDWGV  KR+RK T               G +                    S+P NWGRIASIMSEK  Q RLW RFMQ DL +FR  TGH+ALA FAAS+ +G  PMS N+IVTGNAAP+A+GR FE+KSDAHQDEY NFM+V+SGAKIWALA+LTEEQV KGRKTKG+LSSSFRLDAVDRTKNRT EEHE+AG FETVWMGPGDVL+NPAWVWHQVNSEPQTLAYS+M+     GK+ + G
Sbjct:    1 MGGSTVTRS---RRTAAARRTGLSSSLPPCTPFKNALTIRS----PAAATAEDCPSQHAPKA-AVKNPSCVKLDF---EKSSVSHSSTAVAAAVALDVCKPECSGSDRRALVLPAGLPTSPAASSRLPAKKQTEGTKVDESSFVLKLETQDVEEARRAVRYARLHQRPLLLRGLFRETVKSFTPDQLQCLPEDVKVCADDKTGIGFQPLRDWGVPHKRVRKPTAAAVRVATAKKGGSRGSDSSQSGSSNHNGTIEAEDSTGSMPSNWGRIASIMSEKPLQTRLWARFMQKDLFAFRTKTGHSALADFAASIHQGCKPMSSNMIVTGNAAPSAAGRCFEMKSDAHQDEYHNFMVVASGAKIWALAALTEEQVAKGRKTKGRLSSSFRLDAVDRTKNRTPEEHEVAGLFETVWMGPGDVLFNPAWVWHQVNSEPQTLAYSVMYPVGGGGKDARVG 442
The following BLAST results are available for this feature:
BLAST of NO15G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853794.12.000e-11453.42hypoxia-inducible factor alpha subunit [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001463NSK001463Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01440.1NO15G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100011g64gene7994Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01440.1NO15G01440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01440 ID=NO15G01440|Name=NO15G01440|organism=Nannochloropsis oceanica|type=gene|length=1692bp
TCACAGCACCGAATGAATCGCACGACCCCAATCCGCAGCAGCACTCGCCG
GGCTGCCATCGCGGCGCAGAGAACGGCTGTGGCCCCCAGCTCACCTCCCT
GCACTCCCTTTTCCAAGGGCCTGAAAATCACAAGTTCAGGAACAGATGCA
GCGGCAGCGGTCGATGGGCAGGAGCCACAGCCACATTTATTGCGCGCGCT
TTCCACCAAGAATAGAAGCAGCGTTCAGTTGGACTTTGGGACCTCGACGA
CGTCGTCTTCGTCGGCCGCTGCAGCGGTAAAACCTGCGGGCGCCCCAAGG
CAAGCCTCAAGCAAACCAGCGGCGGATGCCTCAGCAGCGGCATCCTCCAC
TGACTCGTCGTCGTCGTCGTCCTCTGAAATAGATTCTGGAATCCCTTTCC
AAATTGATTTTTCGTCCTATGTGCTCAAGCTCCAAATCCAAGACCTGAAC
GAGGCCCGACAAGCCGTTGCACATGCCAGACGACTCAGGCGACCACTCCT
CCTCCAAGGCCTGCTTACCGAGACAGTCAAAAACTACACACCAGACCACC
TACAACTCCTCCCCGAGGACGTCAAAGTTTGCTCAGATGATAAATCGGGC
ATTGGCTTCCAGCCTCTCCGAGATTGGGGCGTGGCCCCCAAGCGCTTGCG
GAAAGCAACCGCGGCAGCAGCATCCGCAGCACCGACAAGCAGCACCACTG
CAACAGGAGAAGAAAGTATACCATATAACTGGGGTCGTATCGCAAGTATT
ATGAGTGAGAAAGCCCCACAGGCCCGTTTGTGGACGCGCTTTATGCAAGA
TGACCTCGCTAGCTTTCGTGCTAGTACGGGGCATACCGCCCTTGCCTCCT
TCGCTGCCTCCGTCTTCGAGGGTCGTTCCCCCATGTCTTGCAATGTCATC
GTAACGGGGAATGCTGCCCCTACAGCTTCTGGACGTCGCTTTGAATTGAA
ATCAGATGCACACCAAGATGAGTATGATAATTTTATGCTGGTCTCGTCAG
GGGCAAAGATATGGGCGTTGGCCTCTCTGACGGAGGAGCAGGTTTTGAAA
GGAAGGAAGACGAAGGGAAAACTGAGCAGTTCCTTTCGACTCGATGCCGT
GGATAGGACGAAGAATCGAACGAGAGAGGAGCACGAGATTGCGGGGTGTT
TTGAAACTGTGTGGATGGGCCCGGGGGATGTGCTTTACAATCCAGCTTGG
GTGTGGCATCAGGTGAATAGTGAGCCGCAGACGTTGGCGTACAGTATCAT
GCACACTACAAACGGGAAGGAGGAAAAGGCAGGCGAGACGAGGGGTTGAA
TGTCGGGGAGAAAGGGAGGAAGATGGGTCGAAGGAGGCGGCGGATCGAGG
AGGAGGAGGAGGAGGATAGAAGGAGATGGGGAGATGTGAGAGTGGGAGTG
AGTGGGAGTCGATGAGTGAGACACAAGCAAAAACGAGACCAAGAGACTGT
AACAGATGAAGACATAGAAAGTGAGCCTGATGTATTTAATTATAGTTATG
TGGAAACTGAAGACATTTCCCTTGACTGGGGGTCAAGAAATGAAGAAAAG
GAACAACTGGTCGACCCCCCACGTCCTGCTTGACAACAGAGAAAATAGAT
TTTTCGGATCTGGGCGGATGGAAGTCAGCGAGAAAAGGTACAAAGCAAAG
CTTACGACAAAAGACAAAAAACACGACGAGCGAGGTGAGAGG
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protein sequence of NO15G01440.1

>NO15G01440.1-protein ID=NO15G01440.1-protein|Name=NO15G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MNRTTPIRSSTRRAAIAAQRTAVAPSSPPCTPFSKGLKITSSGTDAAAAV
DGQEPQPHLLRALSTKNRSSVQLDFGTSTTSSSSAAAAVKPAGAPRQASS
KPAADASAAASSTDSSSSSSSEIDSGIPFQIDFSSYVLKLQIQDLNEARQ
AVAHARRLRRPLLLQGLLTETVKNYTPDHLQLLPEDVKVCSDDKSGIGFQ
PLRDWGVAPKRLRKATAAAASAAPTSSTTATGEESIPYNWGRIASIMSEK
APQARLWTRFMQDDLASFRASTGHTALASFAASVFEGRSPMSCNVIVTGN
AAPTASGRRFELKSDAHQDEYDNFMLVSSGAKIWALASLTEEQVLKGRKT
KGKLSSSFRLDAVDRTKNRTREEHEIAGCFETVWMGPGDVLYNPAWVWHQ
VNSEPQTLAYSIMHTTNGKEEKAGETRG*
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Synonyms
Publications