NO15G01440.1, NO15G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01440.1
Unique NameNO15G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1692
Alignment locationchr15:408023..409714 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:408023..409714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01440.1 vs.
Match: XP_005853794.1 (hypoxia-inducible factor alpha subunit [Nannochloropsis gaditana CCMP526]; EKU22567.1 hypoxia-inducible factor alpha subunit [Nannochloropsis gaditana CCMP526]; EWM22423.1 hypothetical protein Naga_100011g64 [Nannochloropsis gaditana])

HSP 1 Score: 438.0 bits (1125), Expect = 3.500e-119
Identity = 262/455 (57.58%), Postives = 314/455 (69.01%), Query Frame = 0 
Query:    1 MNRTTPIRSSTRRAAIAAQRTAVAPSSPPCTPFSKGLKITSSGTDAAAAVDGQEPQPHLLRALSTKNRSSVQLDFGTSTTSSSSAAAAV-------KP--AGAPRQASSKPAADASAAASSTDSSSSSSSEIDSGIPFQIDFSSYVLKLQIQDLNEARQAVAHARRLRRPLLLQGLLTETVKNYTPDHLQLLPEDVKVCSDDKSGIGFQPLRDWGVAPKRLRKATAAAASAAPTSSTTATGEES--------------------IPYNWGRIASIMSEKAPQARLWTRFMQDDLASFRASTGHTALASFAASVFEGRSPMSCNVIVTGNAAPTASGRRFELKSDAHQDEYDNFMLVSSGAKIWALASLTEEQVLKGRKTKGKLSSSFRLDAVDRTKNRTREEHEIAGCFETVWMGPGDVLYNPAWVWHQVNSEPQTLAYSIMHTT--NGKEEKAG 425
            M  +T  RS  RR A AA+RT ++ S PPCTPF   L I S     AAA     P  H  +A + KN S V+LDF  S+ S SS A A        KP  +G+ R+A   PA   ++ A+S+   +   +E       ++D SS+VLKL+ QD+ EAR+AV +AR  +RPLLL+GL  ETVK++TPD LQ LPEDVKVC+DDK+GIGFQPLRDWGV  KR+RK TAAA   A      + G +S                    +P NWGRIASIMSEK  Q RLW RFMQ DL +FR  TGH+ALA FAAS+ +G  PMS N+IVTGNAAP+A+GR FE+KSDAHQDEY NFM+V+SGAKIWALA+LTEEQV KGRKTKG+LSSSFRLDAVDRTKNRT EEHE+AG FETVWMGPGDVL+NPAWVWHQVNSEPQTLAYS+M+     GK+ + G
Sbjct:    1 MGGSTVTRS--RRTA-AARRTGLSSSLPPCTPFKNALTIRSP----AAATAEDCPSQHAPKA-AVKNPSCVKLDFEKSSVSHSSTAVAAAVALDVCKPECSGSDRRALVLPAGLPTSPAASSRLPAKKQTE-----GTKVDESSFVLKLETQDVEEARRAVRYARLHQRPLLLRGLFRETVKSFTPDQLQCLPEDVKVCADDKTGIGFQPLRDWGVPHKRVRKPTAAAVRVATAKKGGSRGSDSSQSGSSNHNGTIEAEDSTGSMPSNWGRIASIMSEKPLQTRLWARFMQKDLFAFRTKTGHSALADFAASIHQGCKPMSSNMIVTGNAAPSAAGRCFEMKSDAHQDEYHNFMVVASGAKIWALAALTEEQVAKGRKTKGRLSSSFRLDAVDRTKNRTPEEHEVAGLFETVWMGPGDVLFNPAWVWHQVNSEPQTLAYSVMYPVGGGGKDARVG 442
The following BLAST results are available for this feature:
BLAST of NO15G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853794.13.500e-11957.58hypoxia-inducible factor alpha subunit [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01440NO15G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01440.1NO15G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01440.1.cds1NO15G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01440.1 ID=NO15G01440.1|Name=NO15G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp
TCACAGCACCGAATGAATCGCACGACCCCAATCCGCAGCAGCACTCGCCG
GGCTGCCATCGCGGCGCAGAGAACGGCTGTGGCCCCCAGCTCACCTCCCT
GCACTCCCTTTTCCAAGGGCCTGAAAATCACAAGTTCAGGAACAGATGCA
GCGGCAGCGGTCGATGGGCAGGAGCCACAGCCACATTTATTGCGCGCGCT
TTCCACCAAGAATAGAAGCAGCGTTCAGTTGGACTTTGGGACCTCGACGA
CGTCGTCTTCGTCGGCCGCTGCAGCGGTAAAACCTGCGGGCGCCCCAAGG
CAAGCCTCAAGCAAACCAGCGGCGGATGCCTCAGCAGCGGCATCCTCCAC
TGACTCGTCGTCGTCGTCGTCCTCTGAAATAGATTCTGGAATCCCTTTCC
AAATTGATTTTTCGTCCTATGTGCTCAAGCTCCAAATCCAAGACCTGAAC
GAGGCCCGACAAGCCGTTGCACATGCCAGACGACTCAGGCGACCACTCCT
CCTCCAAGGCCTGCTTACCGAGACAGTCAAAAACTACACACCAGACCACC
TACAACTCCTCCCCGAGGACGTCAAAGTTTGCTCAGATGATAAATCGGGC
ATTGGCTTCCAGCCTCTCCGAGATTGGGGCGTGGCCCCCAAGCGCTTGCG
GAAAGCAACCGCGGCAGCAGCATCCGCAGCACCGACAAGCAGCACCACTG
CAACAGGAGAAGAAAGTATACCATATAACTGGGGTCGTATCGCAAGTATT
ATGAGTGAGAAAGCCCCACAGGCCCGTTTGTGGACGCGCTTTATGCAAGA
TGACCTCGCTAGCTTTCGTGCTAGTACGGGGCATACCGCCCTTGCCTCCT
TCGCTGCCTCCGTCTTCGAGGGTCGTTCCCCCATGTCTTGCAATGTCATC
GTAACGGGGAATGCTGCCCCTACAGCTTCTGGACGTCGCTTTGAATTGAA
ATCAGATGCACACCAAGATGAGTATGATAATTTTATGCTGGTCTCGTCAG
GGGCAAAGATATGGGCGTTGGCCTCTCTGACGGAGGAGCAGGTTTTGAAA
GGAAGGAAGACGAAGGGAAAACTGAGCAGTTCCTTTCGACTCGATGCCGT
GGATAGGACGAAGAATCGAACGAGAGAGGAGCACGAGATTGCGGGGTGTT
TTGAAACTGTGTGGATGGGCCCGGGGGATGTGCTTTACAATCCAGCTTGG
GTGTGGCATCAGGTGAATAGTGAGCCGCAGACGTTGGCGTACAGTATCAT
GCACACTACAAACGGGAAGGAGGAAAAGGCAGGCGAGACGAGGGGTTGAA
TGTCGGGGAGAAAGGGAGGAAGATGGGTCGAAGGAGGCGGCGGATCGAGG
AGGAGGAGGAGGAGGATAGAAGGAGATGGGGAGATGTGAGAGTGGGAGTG
AGTGGGAGTCGATGAGTGAGACACAAGCAAAAACGAGACCAAGAGACTGT
AACAGATGAAGACATAGAAAGTGAGCCTGATGTATTTAATTATAGTTATG
TGGAAACTGAAGACATTTCCCTTGACTGGGGGTCAAGAAATGAAGAAAAG
GAACAACTGGTCGACCCCCCACGTCCTGCTTGACAACAGAGAAAATAGAT
TTTTCGGATCTGGGCGGATGGAAGTCAGCGAGAAAAGGTACAAAGCAAAG
CTTACGACAAAAGACAAAAAACACGACGAGCGAGGTGAGAGG
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protein sequence of NO15G01440.1

>NO15G01440.1-protein ID=NO15G01440.1-protein|Name=NO15G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MNRTTPIRSSTRRAAIAAQRTAVAPSSPPCTPFSKGLKITSSGTDAAAAV
DGQEPQPHLLRALSTKNRSSVQLDFGTSTTSSSSAAAAVKPAGAPRQASS
KPAADASAAASSTDSSSSSSSEIDSGIPFQIDFSSYVLKLQIQDLNEARQ
AVAHARRLRRPLLLQGLLTETVKNYTPDHLQLLPEDVKVCSDDKSGIGFQ
PLRDWGVAPKRLRKATAAAASAAPTSSTTATGEESIPYNWGRIASIMSEK
APQARLWTRFMQDDLASFRASTGHTALASFAASVFEGRSPMSCNVIVTGN
AAPTASGRRFELKSDAHQDEYDNFMLVSSGAKIWALASLTEEQVLKGRKT
KGKLSSSFRLDAVDRTKNRTREEHEIAGCFETVWMGPGDVLYNPAWVWHQ
VNSEPQTLAYSIMHTTNGKEEKAGETRG*
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mRNA from alignment at chr15:408023..409714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01440.1 ID=NO15G01440.1|Name=NO15G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at chr15:408023..409714+ (Nannochloropsis oceanica)
TCACAGCACCGAATGAATCGCACGACCCCAATCCGCAGCAGCACTCGCCG
GGCTGCCATCGCGGCGCAGAGAACGGCTGTGGCCCCCAGCTCACCTCCCT
GCACTCCCTTTTCCAAGGGCCTGAAAATCACAAGTTCAGGAACAGATGCA
GCGGCAGCGGTCGATGGGCAGGAGCCACAGCCACATTTATTGCGCGCGCT
TTCCACCAAGAATAGAAGCAGCGTTCAGTTGGACTTTGGGACCTCGACGA
CGTCGTCTTCGTCGGCCGCTGCAGCGGTAAAACCTGCGGGCGCCCCAAGG
CAAGCCTCAAGCAAACCAGCGGCGGATGCCTCAGCAGCGGCATCCTCCAC
TGACTCGTCGTCGTCGTCGTCCTCTGAAATAGATTCTGGAATCCCTTTCC
AAATTGATTTTTCGTCCTATGTGCTCAAGCTCCAAATCCAAGACCTGAAC
GAGGCCCGACAAGCCGTTGCACATGCCAGACGACTCAGGCGACCACTCCT
CCTCCAAGGCCTGCTTACCGAGACAGTCAAAAACTACACACCAGACCACC
TACAACTCCTCCCCGAGGACGTCAAAGTTTGCTCAGATGATAAATCGGGC
ATTGGCTTCCAGCCTCTCCGAGATTGGGGCGTGGCCCCCAAGCGCTTGCG
GAAAGCAACCGCGGCAGCAGCATCCGCAGCACCGACAAGCAGCACCACTG
CAACAGGAGAAGAAAGTATACCATATAACTGGGGTCGTATCGCAAGTATT
ATGAGTGAGAAAGCCCCACAGGCCCGTTTGTGGACGCGCTTTATGCAAGA
TGACCTCGCTAGCTTTCGTGCTAGTACGGGGCATACCGCCCTTGCCTCCT
TCGCTGCCTCCGTCTTCGAGGGTCGTTCCCCCATGTCTTGCAATGTCATC
GTAACGGGGAATGCTGCCCCTACAGCTTCTGGACGTCGCTTTGAATTGAA
ATCAGATGCACACCAAGATGAGTATGATAATTTTATGCTGGTCTCGTCAG
GGGCAAAGATATGGGCGTTGGCCTCTCTGACGGAGGAGCAGGTTTTGAAA
GGAAGGAAGACGAAGGGAAAACTGAGCAGTTCCTTTCGACTCGATGCCGT
GGATAGGACGAAGAATCGAACGAGAGAGGAGCACGAGATTGCGGGGTGTT
TTGAAACTGTGTGGATGGGCCCGGGGGATGTGCTTTACAATCCAGCTTGG
GTGTGGCATCAGGTGAATAGTGAGCCGCAGACGTTGGCGTACAGTATCAT
GCACACTACAAACGGGAAGGAGGAAAAGGCAGGCGAGACGAGGGGTTGAA
TGTCGGGGAGAAAGGGAGGAAGATGGGTCGAAGGAGGCGGCGGATCGAGG
AGGAGGAGGAGGAGGATAGAAGGAGATGGGGAGATGTGAGAGTGGGAGTG
AGTGGGAGTCGATGAGTGAGACACAAGCAAAAACGAGACCAAGAGACTGT
AACAGATGAAGACATAGAAAGTGAGCCTGATGTATTTAATTATAGTTATG
TGGAAACTGAAGACATTTCCCTTGACTGGGGGTCAAGAAATGAAGAAAAG
GAACAACTGGTCGACCCCCCACGTCCTGCTTGACAACAGAGAAAATAGAT
TTTTCGGATCTGGGCGGATGGAAGTCAGCGAGAAAAGGTACAAAGCAAAG
CTTACGACAAAAGACAAAAAACACGACGAGCGAGGTGAGAGG
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Coding sequence (CDS) from alignment at chr15:408023..409714+

>NO15G01440.1 ID=NO15G01440.1|Name=NO15G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr15:408023..409714+ (Nannochloropsis oceanica)
ATGAATCGCACGACCCCAATCCGCAGCAGCACTCGCCGGGCTGCCATCGC
GGCGCAGAGAACGGCTGTGGCCCCCAGCTCACCTCCCTGCACTCCCTTTT
CCAAGGGCCTGAAAATCACAAGTTCAGGAACAGATGCAGCGGCAGCGGTC
GATGGGCAGGAGCCACAGCCACATTTATTGCGCGCGCTTTCCACCAAGAA
TAGAAGCAGCGTTCAGTTGGACTTTGGGACCTCGACGACGTCGTCTTCGT
CGGCCGCTGCAGCGGTAAAACCTGCGGGCGCCCCAAGGCAAGCCTCAAGC
AAACCAGCGGCGGATGCCTCAGCAGCGGCATCCTCCACTGACTCGTCGTC
GTCGTCGTCCTCTGAAATAGATTCTGGAATCCCTTTCCAAATTGATTTTT
CGTCCTATGTGCTCAAGCTCCAAATCCAAGACCTGAACGAGGCCCGACAA
GCCGTTGCACATGCCAGACGACTCAGGCGACCACTCCTCCTCCAAGGCCT
GCTTACCGAGACAGTCAAAAACTACACACCAGACCACCTACAACTCCTCC
CCGAGGACGTCAAAGTTTGCTCAGATGATAAATCGGGCATTGGCTTCCAG
CCTCTCCGAGATTGGGGCGTGGCCCCCAAGCGCTTGCGGAAAGCAACCGC
GGCAGCAGCATCCGCAGCACCGACAAGCAGCACCACTGCAACAGGAGAAG
AAAGTATACCATATAACTGGGGTCGTATCGCAAGTATTATGAGTGAGAAA
GCCCCACAGGCCCGTTTGTGGACGCGCTTTATGCAAGATGACCTCGCTAG
CTTTCGTGCTAGTACGGGGCATACCGCCCTTGCCTCCTTCGCTGCCTCCG
TCTTCGAGGGTCGTTCCCCCATGTCTTGCAATGTCATCGTAACGGGGAAT
GCTGCCCCTACAGCTTCTGGACGTCGCTTTGAATTGAAATCAGATGCACA
CCAAGATGAGTATGATAATTTTATGCTGGTCTCGTCAGGGGCAAAGATAT
GGGCGTTGGCCTCTCTGACGGAGGAGCAGGTTTTGAAAGGAAGGAAGACG
AAGGGAAAACTGAGCAGTTCCTTTCGACTCGATGCCGTGGATAGGACGAA
GAATCGAACGAGAGAGGAGCACGAGATTGCGGGGTGTTTTGAAACTGTGT
GGATGGGCCCGGGGGATGTGCTTTACAATCCAGCTTGGGTGTGGCATCAG
GTGAATAGTGAGCCGCAGACGTTGGCGTACAGTATCATGCACACTACAAA
CGGGAAGGAGGAAAAGGCAGGCGAGACGAGGGGTTGA
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Synonyms
Publications