NO15G01380, NO15G01380 (gene) Nannochloropsis oceanica

Overview
NameNO15G01380
Unique NameNO15G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1105
Alignment locationchr15:389466..390570 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:389466..390570 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO15G01380 vs. NCBI_GenBank
Match: EWM22449.1 (hypothetical protein Naga_100011g58 [Nannochloropsis gaditana])

HSP 1 Score: 262.7 bits (670), Expect = 1.200e-66
Identity = 130/217 (59.91%), Postives = 170/217 (78.34%), Query Frame = 0 
Query:   34 RIRHVADTASYYASRLRKT-KVPEVSFVQAATYVWVFVSLVVALIGYASCSASSTRTLLHCTPTACTFERYRGTGKVPLEDVSFPRGRLLGSQSVRTRNGEVVNFEGVRRRKQRVLGHSFVIKIYTRRNDRVGDEDKEFVETSILFTKHNTGRKHARQQAAEINKYARGELDWLEIVEVKKWNALGILAVVAGLVSTVFALLLGDVFGHGNDDGKNK 250
            R R V+D+AS  A R   T + P VSF+Q ATY+W+F+SL VA++GYA+C +S+T + LHCTPTACTFERY+G  K P+E +SF R RL+G+++ RTRNGEVV+FEG RRR+QRVLGHS++IK Y R+ D    +D    E+SILFTKHNTGRK AR+Q  EINKYARGEL+WLE++E K+WNA G+L++V GLVS  FA+L+GD+FG+  D+ K K
Sbjct:   12 RFRAVSDSASTAALRRDLTPRTPRVSFMQVATYIWLFLSLSVAVLGYAACMSSATHSFLHCTPTACTFERYQGKFKSPVEQISFSRDRLVGAETTRTRNGEVVSFEGARRRRQRVLGHSYLIK-YLRKRDEEVRQDLGSTESSILFTKHNTGRKRARRQTLEINKYARGELNWLEVMETKRWNAFGVLSLVVGLVSAAFAMLVGDLFGNQGDENKLK 227
The following BLAST results are available for this feature:
BLAST of NO15G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22449.11.200e-6659.91hypothetical protein Naga_100011g58 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001469NSK001469Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01380.1NO15G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587492gene_4681Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g58gene7988Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01380.1NO15G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01380 ID=NO15G01380|Name=NO15G01380|organism=Nannochloropsis oceanica|type=gene|length=1105bp
ATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGCG
GCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGTA
GAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCGC
AAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGTG
GGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCgt
acgtacgagattcggggaacggggtcgtctctctatttctctcttctcct
cactcttatttccgtgtatttacccctcaccccacagAGCGTCCTCAACA
CGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTTGAACGGTACCG
AGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCCCCGCGGTCGGC
TTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGGTAGTGAATTTT
GAgtgagtgtactatgacgctttaaaaatggaaattcatggcttttaaaa
acattattcctttctttggctccactgctcccgccctgttaaactcctct
tatccttccttttcattatcatcaccattacttgtctttacagGGGAGTG
CGGCGACGTAAGCAAAGGGTTCTAGGGCACAGCTTTGTGATAAAAATCTA
TACAAGGCGGAATGATAGGGTTGGAGACGAAGATAAGGAATTTGTGGAGA
CCAGCATTCTCTTCACAAAGCATAACACCGGCCGAAAACACGCACGgtat
gtgacatgctcgggtcggatgaaagggatgtgaggtggatagaagatttg
tgcatgtagtctcttcagacttagttgctcgcttatgaatctcacattac
acctcttgtcatataatacagGCAGCAAGCCGCGGAGATCAACAAATACG
CCAGGGGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAAC
GCCTTGGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGC
CCTACTGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACA
AATAA
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protein sequence of NO15G01380.1

>NO15G01380.1-protein ID=NO15G01380.1-protein|Name=NO15G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MVLDNVVRGIAHAFKVRRAPILPTSFDSPRRRRRIRHVADTASYYASRLR
KTKVPEVSFVQAATYVWVFVSLVVALIGYASCSASSTRTLLHCTPTACTF
ERYRGTGKVPLEDVSFPRGRLLGSQSVRTRNGEVVNFEGVRRRKQRVLGH
SFVIKIYTRRNDRVGDEDKEFVETSILFTKHNTGRKHARQQAAEINKYAR
GELDWLEIVEVKKWNALGILAVVAGLVSTVFALLLGDVFGHGNDDGKNK*
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Synonyms
Publications