NO15G01380.1, NO15G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01380.1
Unique NameNO15G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length750
Alignment locationchr15:389466..390570 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:389466..390570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01380.1 vs.
Match: EWM22449.1 (hypothetical protein Naga_100011g58 [Nannochloropsis gaditana])

HSP 1 Score: 262.7 bits (670), Expect = 1.200e-66
Identity = 130/217 (59.91%), Postives = 170/217 (78.34%), Query Frame = 0 
Query:   34 RIRHVADTASYYASRLRKT-KVPEVSFVQAATYVWVFVSLVVALIGYASCSASSTRTLLHCTPTACTFERYRGTGKVPLEDVSFPRGRLLGSQSVRTRNGEVVNFEGVRRRKQRVLGHSFVIKIYTRRNDRVGDEDKEFVETSILFTKHNTGRKHARQQAAEINKYARGELDWLEIVEVKKWNALGILAVVAGLVSTVFALLLGDVFGHGNDDGKNK 250
            R R V+D+AS  A R   T + P VSF+Q ATY+W+F+SL VA++GYA+C +S+T + LHCTPTACTFERY+G  K P+E +SF R RL+G+++ RTRNGEVV+FEG RRR+QRVLGHS++IK Y R+ D    +D    E+SILFTKHNTGRK AR+Q  EINKYARGEL+WLE++E K+WNA G+L++V GLVS  FA+L+GD+FG+  D+ K K
Sbjct:   12 RFRAVSDSASTAALRRDLTPRTPRVSFMQVATYIWLFLSLSVAVLGYAACMSSATHSFLHCTPTACTFERYQGKFKSPVEQISFSRDRLVGAETTRTRNGEVVSFEGARRRRQRVLGHSYLIK-YLRKRDEEVRQDLGSTESSILFTKHNTGRKRARRQTLEINKYARGELNWLEVMETKRWNAFGVLSLVVGLVSAAFAMLVGDLFGNQGDENKLK 227
The following BLAST results are available for this feature:
BLAST of NO15G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22449.11.200e-6659.91hypothetical protein Naga_100011g58 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01380NO15G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01380.1NO15G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01380.1.cds1NO15G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01380.1.cds2NO15G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01380.1.cds3NO15G01380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01380.1.cds4NO15G01380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01380.1 ID=NO15G01380.1|Name=NO15G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=750bp
ATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGCG
GCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGTA
GAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCGC
AAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGTG
GGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCAG
CGTCCTCAACACGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTT
GAACGGTACCGAGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCC
CCGCGGTCGGCTTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGG
TAGTGAATTTTGAGGGAGTGCGGCGACGTAAGCAAAGGGTTCTAGGGCAC
AGCTTTGTGATAAAAATCTATACAAGGCGGAATGATAGGGTTGGAGACGA
AGATAAGGAATTTGTGGAGACCAGCATTCTCTTCACAAAGCATAACACCG
GCCGAAAACACGCACGGCAGCAAGCCGCGGAGATCAACAAATACGCCAGG
GGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAACGCCTT
GGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGCCCTAC
TGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACAAATAA
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protein sequence of NO15G01380.1

>NO15G01380.1-protein ID=NO15G01380.1-protein|Name=NO15G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MVLDNVVRGIAHAFKVRRAPILPTSFDSPRRRRRIRHVADTASYYASRLR
KTKVPEVSFVQAATYVWVFVSLVVALIGYASCSASSTRTLLHCTPTACTF
ERYRGTGKVPLEDVSFPRGRLLGSQSVRTRNGEVVNFEGVRRRKQRVLGH
SFVIKIYTRRNDRVGDEDKEFVETSILFTKHNTGRKHARQQAAEINKYAR
GELDWLEIVEVKKWNALGILAVVAGLVSTVFALLLGDVFGHGNDDGKNK*
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mRNA from alignment at chr15:389466..390570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01380.1 ID=NO15G01380.1|Name=NO15G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp|location=Sequence derived from alignment at chr15:389466..390570+ (Nannochloropsis oceanica)
ATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGCG
GCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGTA
GAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCGC
AAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGTG
GGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCGT
ACGTACGAGATTCGGGGAACGGGGTCGTCTCTCTATTTCTCTCTTCTCCT
CACTCTTATTTCCGTGTATTTACCCCTCACCCCACAGAGCGTCCTCAACA
CGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTTGAACGGTACCG
AGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCCCCGCGGTCGGC
TTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGGTAGTGAATTTT
GAGTGAGTGTACTATGACGCTTTAAAAATGGAAATTCATGGCTTTTAAAA
ACATTATTCCTTTCTTTGGCTCCACTGCTCCCGCCCTGTTAAACTCCTCT
TATCCTTCCTTTTCATTATCATCACCATTACTTGTCTTTACAGGGGAGTG
CGGCGACGTAAGCAAAGGGTTCTAGGGCACAGCTTTGTGATAAAAATCTA
TACAAGGCGGAATGATAGGGTTGGAGACGAAGATAAGGAATTTGTGGAGA
CCAGCATTCTCTTCACAAAGCATAACACCGGCCGAAAACACGCACGGTAT
GTGACATGCTCGGGTCGGATGAAAGGGATGTGAGGTGGATAGAAGATTTG
TGCATGTAGTCTCTTCAGACTTAGTTGCTCGCTTATGAATCTCACATTAC
ACCTCTTGTCATATAATACAGGCAGCAAGCCGCGGAGATCAACAAATACG
CCAGGGGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAAC
GCCTTGGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGC
CCTACTGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACA
AATAA
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Coding sequence (CDS) from alignment at chr15:389466..390570+

>NO15G01380.1 ID=NO15G01380.1|Name=NO15G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr15:389466..390570+ (Nannochloropsis oceanica)
ATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGCG
GCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGTA
GAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCGC
AAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGTG
GGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCAG
CGTCCTCAACACGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTT
GAACGGTACCGAGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCC
CCGCGGTCGGCTTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGG
TAGTGAATTTTGAGGGAGTGCGGCGACGTAAGCAAAGGGTTCTAGGGCAC
AGCTTTGTGATAAAAATCTATACAAGGCGGAATGATAGGGTTGGAGACGA
AGATAAGGAATTTGTGGAGACCAGCATTCTCTTCACAAAGCATAACACCG
GCCGAAAACACGCACGGCAGCAAGCCGCGGAGATCAACAAATACGCCAGG
GGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAACGCCTT
GGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGCCCTAC
TGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACAAATAA
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Synonyms
Publications