NO15G01360, NO15G01360 (gene) Nannochloropsis oceanica

Overview
NameNO15G01360
Unique NameNO15G01360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1871
Alignment locationchr15:382933..384803 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:382933..384803 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G01360 vs. NCBI_GenBank
Match: EWM22499.1 (hypothetical protein Naga_100011g56 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 2.200e-7
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:  339 GPEDRMRKFYEKYEPAKVPQVAKLWAKYTNRHASMWQTIFQKYNVPEGDRRLYFMEYVQ 398
            GP +R+R FYEKY+P  V + A+L+ K+ ++   +W  +F+KYNVPE DRR Y+ EY+Q
Sbjct: 1578 GPVERLRMFYEKYQPKNVSKAAELYEKHKDK---VWDGVFKKYNVPEADRRQYYPEYLQ 1633
The following BLAST results are available for this feature:
BLAST of NO15G01360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22499.12.200e-749.15hypothetical protein Naga_100011g56 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01360.1NO15G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01360.1NO15G01360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01360 ID=NO15G01360|Name=NO15G01360|organism=Nannochloropsis oceanica|type=gene|length=1871bp
ATGGCCAGCAAGGCACCCTCGCCTTTCAATGTTCAGAATGCTACAACAGG
AGCAGCAGGGGCTGACCCCAAAGCTCCAGCAGCAGCGCCAGCTTCAGCTC
CAGGAGTGCCAGCTTCAGCTCCAGGAGTGCAGGGATCTTTGTTCAAGCAG
CTCTCCATGACGAGCTTGAGTGGAGCAATGACAGCAGCAGCGGGAGTCAA
GGGATCCGCGGGCACCAGCAGCACAACGGCACCACAGGCCAAGAGCGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGAAGGGGACGGCAGCATTCC
CGCCTATGCCTACGCgtgcccctaagcattttgttcaaccggtgtcgagt
ctcaccagcgttaccacggccgcaattcattccactactcctaccactgc
tgctgtctccaagCCAGTCACGACCCCAACCCCTGACACGGCGGCGCCTT
CTGCCTCTTCCTCTTTAGATTTTGGTGGCATGGGCATGAGTCTTGGCAGC
TTTGCTGGTGGTGCCAATGCGACTTCCTCGACTGGAGGAAGCACGACGGA
CTTAAAATCCACCTCTCTCTATGGTACGGTACCTGCACCGGCTCCTCCTG
CAGCTCCCGCTGAGACCAAGCCTCCTGCAGCCGCCTCATCCTTGACAAGC
GCGTCTTCGCTACCCTCGTCGACCCCTTCCTTTGGCTTTGCTGGTGGTGC
TTCCCTTTCTGCTACCGCAGCTGCTCCTGCTTCCGCGACTGGTTTGTTCA
ATACCCCTCTTAAATCGACTGTCAACGGCACAAGCTCTGGCTTTGGAGGC
ATCTCCCTCGGTGGTCCTCCCCCTTCTGCCATTCAGAATCCTCCTGTCAG
CAGCAGCAGCGGAGGGTTGGTCTCAGCTCCCCCCGCACCTCCTGCCCAGG
GTCCTCCTCCCTTCGGTGGTGGAGGGTTCGGCGCAACAGCGTCTTCGGCT
CCCTTGGGTGGTGGTGGTGGGTTTGGATTTGGCCAGCAGCAAAATCAGCA
GCAGGCCCCTCCATCTACGCCGGCTGCCACAAGTTTTGGCGGCGGGGCGC
CGGGAGGCTTTGGTAGCCCGCCTGTCGTTATAGCAGCAGGTTCTCAGGGA
TTTGAGGGCTTGGGGCCGGAGGATCGAATGAGGAAATTTTATGAGAAATA
TGAGCCGGCGAAGGTTCCTCAGGTCGCCAAGTTGTGGGCTAAATATACTA
ATAGGCATGCGAGCATGTGGCAGACTATATTTCAGAAGTACAATGTTCCA
GAGGGGGATCGACGGCTATATTTTATGGAGTATGTACAGGGGCAGCAGCA
GCAGCAGCAGCAGCCGCAGCATGCCTCGCCCTTGACCAGTACGACCACTA
CGGCTCAGTTTGGTCGCGCAGGAAGTGGCCTTGGCACCGGTCTTTTTGGC
AGCCCTCCAGCGGGTGGGGCGGTGCAATCGCAGCAGCAGCAGCAGCGGCA
GCAGCCACAGCAGCCACAACAGCCACAACAGCCACAGGGTCAGTCGAGCG
GATTCGCCAGTTTTGCGAATCGTGGGATGGGTGGCTTTGGGGCTGCAGCA
GCTGCTGGAGGGACGGGTTTTGGCCCTCAGGGAGGCACAGGCTTTGGGAT
GCAATCTCGCCCGACTGGGTTTGGTCAATCCCCCCAGCAGCCGACAAGAT
TTGGCGCCCCGGTGGGTGGTGGTGGCGGTGGTGGGTTTGGGCAAGGAGGG
GGGCCACCTTCTGGGTTTGGTGGAGGGGGAGGATTTGGTCAGGGGGTGGG
TGGCGTGCCTGGTGGAGGTGCTTTCAGACAGGCTGCACCTGCCCCTACAG
GTTTTGGCTTCGGGGGGCAGCCGCAGCAGCAGCAGCAGCCATTCGGTGGT
AGTCCATGGACGCAGAGATAA
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protein sequence of NO15G01360.1

>NO15G01360.1-protein ID=NO15G01360.1-protein|Name=NO15G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp
MASKAPSPFNVQNATTGAAGADPKAPAAAPASAPGVPASAPGVQGSLFKQ
LSMTSLSGAMTAAAGVKGSAGTSSTTAPQAKSGGGGGGGGGGGGRGRQHS
RLCLRPVTTPTPDTAAPSASSSLDFGGMGMSLGSFAGGANATSSTGGSTT
DLKSTSLYGTVPAPAPPAAPAETKPPAAASSLTSASSLPSSTPSFGFAGG
ASLSATAAAPASATGLFNTPLKSTVNGTSSGFGGISLGGPPPSAIQNPPV
SSSSGGLVSAPPAPPAQGPPPFGGGGFGATASSAPLGGGGGFGFGQQQNQ
QQAPPSTPAATSFGGGAPGGFGSPPVVIAAGSQGFEGLGPEDRMRKFYEK
YEPAKVPQVAKLWAKYTNRHASMWQTIFQKYNVPEGDRRLYFMEYVQGQQ
QQQQQPQHASPLTSTTTTAQFGRAGSGLGTGLFGSPPAGGAVQSQQQQQR
QQPQQPQQPQQPQGQSSGFASFANRGMGGFGAAAAAGGTGFGPQGGTGFG
MQSRPTGFGQSPQQPTRFGAPVGGGGGGGFGQGGGPPSGFGGGGGFGQGV
GGVPGGGAFRQAAPAPTGFGFGGQPQQQQQPFGGSPWTQR*
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Synonyms
Publications