NO15G01360.1, NO15G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01360.1
Unique NameNO15G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1773
Alignment locationchr15:382933..384803 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:382933..384803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01360.1 vs.
Match: EWM22499.1 (hypothetical protein Naga_100011g56 [Nannochloropsis gaditana])

HSP 1 Score: 258.1 bits (658), Expect = 6.800e-65
Identity = 279/639 (43.66%), Postives = 338/639 (52.90%), Query Frame = 0 
Query:   11 VQNATTGAAGAD-PKAPAAAPA--SAPGV----PASAPG-VQGSLFKQLSMTSLSGAMTAAAGVKGSAGTSSTTAPQAKSGGGGGGGGGGGGRG------------RQHSRLCLRPVTTPTPDTAAPSA----SSSLDFGGMGMSLGSFAGGANATSSTGGSTTDLKST-SLYGTVPAPAPPAAPAETKPPAAASSLTSASSLPSSTPSFGFAGGASLSATAA-----APASATGLFNTPLKSTVNGTSSG-FGGISLGGPPPSAIQNPPVSSSSGGLVSAPPAPPAQGPPPFGGGGFGATASSAPLGGGGGFGFGQQQ---NQQQAPPSTPAATSFG------------GGAPGGFGSPPVVIAAGSQGFEGLGPEDRMRKFYEKYEPAKVPQVAKLWAKYTNRHASMWQTIFQKYNVPEGDRRLYFMEYVQG--QQQQQQQPQHASPLTSTTTTAQFGRAGSGLGTGLFGSPPAGGAVQSQQQQQRQQPQQPQQPQQPQGQSSGFASFANRGMGGFGAAAAAGGTGFGPQGGTGFGMQSRPTGFGQSP----QQPTRFGAPVGGGGGGGFGQGGGPPSGFGGGGGFGQGVGGVPGGGAFRQAAPAPTGFGFGGQPQ-------QQQQPFGGSPWTQR 591
            V+ AT  +A A  P  P  AP+  S PG     PA A G   G++ KQ SM SL+    +A        T S T   +KS     GGGGGG                Q ++      +T +P T  PSA    ++ + FG  G+ LG    G +A    G S T +K+T SL+GT    +P  + A+    AA+  L S S+ PS T  F F   A  +  AA     APA A GLF+TP+KS   GT+ G F G    G   SA+      S+SG    + P   +  P  FGGGGF +TAS A     GGFGF Q Q    QQQ  PSTP    FG             G  GGFG P     + S      GP +R+R FYEKY+P  V + A+L+ K+ ++   +W  +F+KYNVPE DRR Y+ EY+Q      QQQ  QHASPLT TTTTAQFGRAGSGLG G F SP A G  Q QQQQQ+      Q   Q  GQ+SGFA+FANRGMGGFG+ +   GTGFGP GGTGFGMQ RPT FGQSP    QQ + FG+P    G G FGQGG      GGGG FGQG+G    GG F Q    P+GFGFGGQ Q       QQQ  FG + WTQR
Sbjct: 1235 VRQATPSSAAAGYPPMPTKAPSVFSIPGAANKGPAPATGQALGAINKQPSMISLNKVPASA--------TKSATETMSKSNLVKEGGGGGGTAAFPPMATRAPKPFSQQAKPAALAPSTASPATTVPSAPPPSAAPISFGFSGLKLGGGEKGPDAAPE-GSSKTGMKATPSLFGT---SSPQVSDAKPDSSAASKVLVSTSAQPS-TSGFSFGSNAPQAPAAAPSPALAPAPAAGLFSTPIKSA--GTTGGSFFGAQTQGNTSSAV------SASGAPGLSTPTSSSPAPSSFGGGGFKSTASVA-----GGFGFSQPQQKPQQQQLTPSTPVGGGFGSVLPSTMGGGGNAGLQGGFGGP-----SASNAGANAGPVERLRMFYEKYQPKNVSKAAELYEKHKDK---VWDGVFKKYNVPEADRRQYYPEYLQQPLASFQQQPQQHASPLT-TTTTAQFGRAGSGLGMGGFTSPSANGLSQPQQQQQQ------QAHPQASGQTSGFATFANRGMGGFGSVSTT-GTGFGPPGGTGFGMQPRPTLFGQSPSPQQQQTSSFGSP---PGAGSFGQGG------GGGGAFGQGMGAPSVGGTFGQGVGTPSGFGFGGQQQSQQQQQSQQQHAFGSTSWTQR 1822
The following BLAST results are available for this feature:
BLAST of NO15G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22499.16.800e-6543.66hypothetical protein Naga_100011g56 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01360NO15G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01360.1NO15G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01360.1.cds1NO15G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01360.1.cds2NO15G01360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01360.1 ID=NO15G01360.1|Name=NO15G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp
ATGGCCAGCAAGGCACCCTCGCCTTTCAATGTTCAGAATGCTACAACAGG
AGCAGCAGGGGCTGACCCCAAAGCTCCAGCAGCAGCGCCAGCTTCAGCTC
CAGGAGTGCCAGCTTCAGCTCCAGGAGTGCAGGGATCTTTGTTCAAGCAG
CTCTCCATGACGAGCTTGAGTGGAGCAATGACAGCAGCAGCGGGAGTCAA
GGGATCCGCGGGCACCAGCAGCACAACGGCACCACAGGCCAAGAGCGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGAAGGGGACGGCAGCATTCC
CGCCTATGCCTACGCCCAGTCACGACCCCAACCCCTGACACGGCGGCGCC
TTCTGCCTCTTCCTCTTTAGATTTTGGTGGCATGGGCATGAGTCTTGGCA
GCTTTGCTGGTGGTGCCAATGCGACTTCCTCGACTGGAGGAAGCACGACG
GACTTAAAATCCACCTCTCTCTATGGTACGGTACCTGCACCGGCTCCTCC
TGCAGCTCCCGCTGAGACCAAGCCTCCTGCAGCCGCCTCATCCTTGACAA
GCGCGTCTTCGCTACCCTCGTCGACCCCTTCCTTTGGCTTTGCTGGTGGT
GCTTCCCTTTCTGCTACCGCAGCTGCTCCTGCTTCCGCGACTGGTTTGTT
CAATACCCCTCTTAAATCGACTGTCAACGGCACAAGCTCTGGCTTTGGAG
GCATCTCCCTCGGTGGTCCTCCCCCTTCTGCCATTCAGAATCCTCCTGTC
AGCAGCAGCAGCGGAGGGTTGGTCTCAGCTCCCCCCGCACCTCCTGCCCA
GGGTCCTCCTCCCTTCGGTGGTGGAGGGTTCGGCGCAACAGCGTCTTCGG
CTCCCTTGGGTGGTGGTGGTGGGTTTGGATTTGGCCAGCAGCAAAATCAG
CAGCAGGCCCCTCCATCTACGCCGGCTGCCACAAGTTTTGGCGGCGGGGC
GCCGGGAGGCTTTGGTAGCCCGCCTGTCGTTATAGCAGCAGGTTCTCAGG
GATTTGAGGGCTTGGGGCCGGAGGATCGAATGAGGAAATTTTATGAGAAA
TATGAGCCGGCGAAGGTTCCTCAGGTCGCCAAGTTGTGGGCTAAATATAC
TAATAGGCATGCGAGCATGTGGCAGACTATATTTCAGAAGTACAATGTTC
CAGAGGGGGATCGACGGCTATATTTTATGGAGTATGTACAGGGGCAGCAG
CAGCAGCAGCAGCAGCCGCAGCATGCCTCGCCCTTGACCAGTACGACCAC
TACGGCTCAGTTTGGTCGCGCAGGAAGTGGCCTTGGCACCGGTCTTTTTG
GCAGCCCTCCAGCGGGTGGGGCGGTGCAATCGCAGCAGCAGCAGCAGCGG
CAGCAGCCACAGCAGCCACAACAGCCACAACAGCCACAGGGTCAGTCGAG
CGGATTCGCCAGTTTTGCGAATCGTGGGATGGGTGGCTTTGGGGCTGCAG
CAGCTGCTGGAGGGACGGGTTTTGGCCCTCAGGGAGGCACAGGCTTTGGG
ATGCAATCTCGCCCGACTGGGTTTGGTCAATCCCCCCAGCAGCCGACAAG
ATTTGGCGCCCCGGTGGGTGGTGGTGGCGGTGGTGGGTTTGGGCAAGGAG
GGGGGCCACCTTCTGGGTTTGGTGGAGGGGGAGGATTTGGTCAGGGGGTG
GGTGGCGTGCCTGGTGGAGGTGCTTTCAGACAGGCTGCACCTGCCCCTAC
AGGTTTTGGCTTCGGGGGGCAGCCGCAGCAGCAGCAGCAGCCATTCGGTG
GTAGTCCATGGACGCAGAGATAA
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protein sequence of NO15G01360.1

>NO15G01360.1-protein ID=NO15G01360.1-protein|Name=NO15G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp
MASKAPSPFNVQNATTGAAGADPKAPAAAPASAPGVPASAPGVQGSLFKQ
LSMTSLSGAMTAAAGVKGSAGTSSTTAPQAKSGGGGGGGGGGGGRGRQHS
RLCLRPVTTPTPDTAAPSASSSLDFGGMGMSLGSFAGGANATSSTGGSTT
DLKSTSLYGTVPAPAPPAAPAETKPPAAASSLTSASSLPSSTPSFGFAGG
ASLSATAAAPASATGLFNTPLKSTVNGTSSGFGGISLGGPPPSAIQNPPV
SSSSGGLVSAPPAPPAQGPPPFGGGGFGATASSAPLGGGGGFGFGQQQNQ
QQAPPSTPAATSFGGGAPGGFGSPPVVIAAGSQGFEGLGPEDRMRKFYEK
YEPAKVPQVAKLWAKYTNRHASMWQTIFQKYNVPEGDRRLYFMEYVQGQQ
QQQQQPQHASPLTSTTTTAQFGRAGSGLGTGLFGSPPAGGAVQSQQQQQR
QQPQQPQQPQQPQGQSSGFASFANRGMGGFGAAAAAGGTGFGPQGGTGFG
MQSRPTGFGQSPQQPTRFGAPVGGGGGGGFGQGGGPPSGFGGGGGFGQGV
GGVPGGGAFRQAAPAPTGFGFGGQPQQQQQPFGGSPWTQR*
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mRNA from alignment at chr15:382933..384803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01360.1 ID=NO15G01360.1|Name=NO15G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1871bp|location=Sequence derived from alignment at chr15:382933..384803+ (Nannochloropsis oceanica)
ATGGCCAGCAAGGCACCCTCGCCTTTCAATGTTCAGAATGCTACAACAGG
AGCAGCAGGGGCTGACCCCAAAGCTCCAGCAGCAGCGCCAGCTTCAGCTC
CAGGAGTGCCAGCTTCAGCTCCAGGAGTGCAGGGATCTTTGTTCAAGCAG
CTCTCCATGACGAGCTTGAGTGGAGCAATGACAGCAGCAGCGGGAGTCAA
GGGATCCGCGGGCACCAGCAGCACAACGGCACCACAGGCCAAGAGCGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGAAGGGGACGGCAGCATTCC
CGCCTATGCCTACGCGTGCCCCTAAGCATTTTGTTCAACCGGTGTCGAGT
CTCACCAGCGTTACCACGGCCGCAATTCATTCCACTACTCCTACCACTGC
TGCTGTCTCCAAGCCAGTCACGACCCCAACCCCTGACACGGCGGCGCCTT
CTGCCTCTTCCTCTTTAGATTTTGGTGGCATGGGCATGAGTCTTGGCAGC
TTTGCTGGTGGTGCCAATGCGACTTCCTCGACTGGAGGAAGCACGACGGA
CTTAAAATCCACCTCTCTCTATGGTACGGTACCTGCACCGGCTCCTCCTG
CAGCTCCCGCTGAGACCAAGCCTCCTGCAGCCGCCTCATCCTTGACAAGC
GCGTCTTCGCTACCCTCGTCGACCCCTTCCTTTGGCTTTGCTGGTGGTGC
TTCCCTTTCTGCTACCGCAGCTGCTCCTGCTTCCGCGACTGGTTTGTTCA
ATACCCCTCTTAAATCGACTGTCAACGGCACAAGCTCTGGCTTTGGAGGC
ATCTCCCTCGGTGGTCCTCCCCCTTCTGCCATTCAGAATCCTCCTGTCAG
CAGCAGCAGCGGAGGGTTGGTCTCAGCTCCCCCCGCACCTCCTGCCCAGG
GTCCTCCTCCCTTCGGTGGTGGAGGGTTCGGCGCAACAGCGTCTTCGGCT
CCCTTGGGTGGTGGTGGTGGGTTTGGATTTGGCCAGCAGCAAAATCAGCA
GCAGGCCCCTCCATCTACGCCGGCTGCCACAAGTTTTGGCGGCGGGGCGC
CGGGAGGCTTTGGTAGCCCGCCTGTCGTTATAGCAGCAGGTTCTCAGGGA
TTTGAGGGCTTGGGGCCGGAGGATCGAATGAGGAAATTTTATGAGAAATA
TGAGCCGGCGAAGGTTCCTCAGGTCGCCAAGTTGTGGGCTAAATATACTA
ATAGGCATGCGAGCATGTGGCAGACTATATTTCAGAAGTACAATGTTCCA
GAGGGGGATCGACGGCTATATTTTATGGAGTATGTACAGGGGCAGCAGCA
GCAGCAGCAGCAGCCGCAGCATGCCTCGCCCTTGACCAGTACGACCACTA
CGGCTCAGTTTGGTCGCGCAGGAAGTGGCCTTGGCACCGGTCTTTTTGGC
AGCCCTCCAGCGGGTGGGGCGGTGCAATCGCAGCAGCAGCAGCAGCGGCA
GCAGCCACAGCAGCCACAACAGCCACAACAGCCACAGGGTCAGTCGAGCG
GATTCGCCAGTTTTGCGAATCGTGGGATGGGTGGCTTTGGGGCTGCAGCA
GCTGCTGGAGGGACGGGTTTTGGCCCTCAGGGAGGCACAGGCTTTGGGAT
GCAATCTCGCCCGACTGGGTTTGGTCAATCCCCCCAGCAGCCGACAAGAT
TTGGCGCCCCGGTGGGTGGTGGTGGCGGTGGTGGGTTTGGGCAAGGAGGG
GGGCCACCTTCTGGGTTTGGTGGAGGGGGAGGATTTGGTCAGGGGGTGGG
TGGCGTGCCTGGTGGAGGTGCTTTCAGACAGGCTGCACCTGCCCCTACAG
GTTTTGGCTTCGGGGGGCAGCCGCAGCAGCAGCAGCAGCCATTCGGTGGT
AGTCCATGGACGCAGAGATAA
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Coding sequence (CDS) from alignment at chr15:382933..384803+

>NO15G01360.1 ID=NO15G01360.1|Name=NO15G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1773bp|location=Sequence derived from alignment at chr15:382933..384803+ (Nannochloropsis oceanica)
ATGGCCAGCAAGGCACCCTCGCCTTTCAATGTTCAGAATGCTACAACAGG
AGCAGCAGGGGCTGACCCCAAAGCTCCAGCAGCAGCGCCAGCTTCAGCTC
CAGGAGTGCCAGCTTCAGCTCCAGGAGTGCAGGGATCTTTGTTCAAGCAG
CTCTCCATGACGAGCTTGAGTGGAGCAATGACAGCAGCAGCGGGAGTCAA
GGGATCCGCGGGCACCAGCAGCACAACGGCACCACAGGCCAAGAGCGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGAAGGGGACGGCAGCATTCC
CGCCTATGCCTACGCCCAGTCACGACCCCAACCCCTGACACGGCGGCGCC
TTCTGCCTCTTCCTCTTTAGATTTTGGTGGCATGGGCATGAGTCTTGGCA
GCTTTGCTGGTGGTGCCAATGCGACTTCCTCGACTGGAGGAAGCACGACG
GACTTAAAATCCACCTCTCTCTATGGTACGGTACCTGCACCGGCTCCTCC
TGCAGCTCCCGCTGAGACCAAGCCTCCTGCAGCCGCCTCATCCTTGACAA
GCGCGTCTTCGCTACCCTCGTCGACCCCTTCCTTTGGCTTTGCTGGTGGT
GCTTCCCTTTCTGCTACCGCAGCTGCTCCTGCTTCCGCGACTGGTTTGTT
CAATACCCCTCTTAAATCGACTGTCAACGGCACAAGCTCTGGCTTTGGAG
GCATCTCCCTCGGTGGTCCTCCCCCTTCTGCCATTCAGAATCCTCCTGTC
AGCAGCAGCAGCGGAGGGTTGGTCTCAGCTCCCCCCGCACCTCCTGCCCA
GGGTCCTCCTCCCTTCGGTGGTGGAGGGTTCGGCGCAACAGCGTCTTCGG
CTCCCTTGGGTGGTGGTGGTGGGTTTGGATTTGGCCAGCAGCAAAATCAG
CAGCAGGCCCCTCCATCTACGCCGGCTGCCACAAGTTTTGGCGGCGGGGC
GCCGGGAGGCTTTGGTAGCCCGCCTGTCGTTATAGCAGCAGGTTCTCAGG
GATTTGAGGGCTTGGGGCCGGAGGATCGAATGAGGAAATTTTATGAGAAA
TATGAGCCGGCGAAGGTTCCTCAGGTCGCCAAGTTGTGGGCTAAATATAC
TAATAGGCATGCGAGCATGTGGCAGACTATATTTCAGAAGTACAATGTTC
CAGAGGGGGATCGACGGCTATATTTTATGGAGTATGTACAGGGGCAGCAG
CAGCAGCAGCAGCAGCCGCAGCATGCCTCGCCCTTGACCAGTACGACCAC
TACGGCTCAGTTTGGTCGCGCAGGAAGTGGCCTTGGCACCGGTCTTTTTG
GCAGCCCTCCAGCGGGTGGGGCGGTGCAATCGCAGCAGCAGCAGCAGCGG
CAGCAGCCACAGCAGCCACAACAGCCACAACAGCCACAGGGTCAGTCGAG
CGGATTCGCCAGTTTTGCGAATCGTGGGATGGGTGGCTTTGGGGCTGCAG
CAGCTGCTGGAGGGACGGGTTTTGGCCCTCAGGGAGGCACAGGCTTTGGG
ATGCAATCTCGCCCGACTGGGTTTGGTCAATCCCCCCAGCAGCCGACAAG
ATTTGGCGCCCCGGTGGGTGGTGGTGGCGGTGGTGGGTTTGGGCAAGGAG
GGGGGCCACCTTCTGGGTTTGGTGGAGGGGGAGGATTTGGTCAGGGGGTG
GGTGGCGTGCCTGGTGGAGGTGCTTTCAGACAGGCTGCACCTGCCCCTAC
AGGTTTTGGCTTCGGGGGGCAGCCGCAGCAGCAGCAGCAGCCATTCGGTG
GTAGTCCATGGACGCAGAGATAA
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Synonyms
Publications