NO15G01270, NO15G01270 (gene) Nannochloropsis oceanica

Overview
NameNO15G01270
Unique NameNO15G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2053
Alignment locationchr15:358138..360190 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:358138..360190 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G01270 vs. NCBI_GenBank
Match: EWM22492.1 (hypothetical protein Naga_100011g48 [Nannochloropsis gaditana])

HSP 1 Score: 359.4 bits (921), Expect = 1.100e-95
Identity = 180/288 (62.50%), Postives = 212/288 (73.61%), Query Frame = 0 
Query:    1 MGAKHSIVAIVPEPLELQSGPDGSSIHAELLPKAYRHLSQFPVLGKKARGPIRPYPNENVTHFLKEQTEPAALIADFLSVQERLAFLQTHKVGLPPKLLKPLLFKGPSRELNFLCCPTTTAAVENPSSLNTNYDNPVVANGAGMVDKNEQGKCFQLEVRYRGSVLSRAVPLPLVATALHRVIRSWLDNRLRKQGFPLILAMVNKLLSVFRPTEEVWYAIVNNCGEDGASLLTYACADPSIPLPIIEQLLEIPCLDLGLPDRKSGLNAIQLAHTKNRQELLVYFASLVG 289
            MG   SI A  PEPLE       S      LPKAYRHL  FPVL K+ARGPIR +PNE +THFLKEQ   A LIAD+LSV+ERL FLQTHKVGLPPK LK LLF GPSREL FL  P TTA VE    ++++++N +      +   N  G  FQLE+RYRGS LSRAVPL LV+TALHRVIRSW+D+ LRK+GF  +L MVN+LLSVFRPTEEVWY I+N+ G+DG +LLTYAC+    PL +IE+LL+IPC DL LPD K GLNAIQLAH  +RQ++L +FASLVG
Sbjct:    1 MGGGQSIAAAAPEPLEFTMSSSAS------LPKAYRHLCHFPVLAKQARGPIRHHPNERITHFLKEQDATALLIADYLSVRERLVFLQTHKVGLPPKHLKHLLFSGPSRELKFLYSPATTAMVEGKHPVSSSFNNNLKETKTEIYATNNFGNTFQLEIRYRGSFLSRAVPLSLVSTALHRVIRSWMDDTLRKRGFSTLLTMVNRLLSVFRPTEEVWYTIINSFGKDGTTLLTYACSSRDTPLSVIEKLLQIPCFDLALPDHKFGLNAIQLAHMHDRQDVLAHFASLVG 282
The following BLAST results are available for this feature:
BLAST of NO15G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22492.11.100e-9562.50hypothetical protein Naga_100011g48 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001479NSK001479Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01270.1NO15G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587448gene_4671Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g48gene7978Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01270.1NO15G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01270 ID=NO15G01270|Name=NO15G01270|organism=Nannochloropsis oceanica|type=gene|length=2053bp
CACATGTTCCAGTTTTCACTCACCTCAGCCCTTCGCTTTTGAGGTTCGGC
TTAAACTGATGCTCCTCGAGTGGTCCCGACAGTTGCATAGGCATATTTCA
TTGTCTAGGCGGTGACGGGTCATGCCCACGCTTGTTTCTTTAGAAGCGTG
CAAATAAGACGCCCTTCAACGCTTTACCCTCCGCGCTCACCACGTGTGAA
AGTAGGAGCCCTTCTTATCAACAGCTACGCGTGGGTTGTTGGCTGACCTC
GACGGGGAAGACAGCCGGGACTGACATGTGTGTGCCCTTGCCTACGTGAT
CTGACTCGTCGACAAGTGACACAATTGCCTCATAAAGTCATGATTGGCTG
TAACACATGGCATGTCAACTCGCCTTCTGGGGGCGATTTACTCGGAGCAA
TGCCCTCAAGTGACAGCTTTTTGACCCGCGGTTCGTTTCTGTCTGGATTC
TGCGTTACTCCCACCAGGACTCACACTGTTCTTTTCAATTCCCACACTCA
GACATTTAACCACTGCCACCACAACCCCCTCTACCGGACACGATATGGGG
GCCAAGCACTCCATCGTGGCCATCGTGCCCGAACCTCTCGAGCTGCAAAG
CGGTCCAGATGGCTCGTCCATCCATGCAGAATTGCTCCCCAAGGCCTACC
GCCACCTGAGCCAATTTCCCGTGCTGGGCAAGAAGGCTCGGGGCCCCATT
CGCCCATACCCAAACGAGAATGTAACGCAgtgagtcatacgtgttagggg
gagcaagaggaagaaaggctcaatgacaaagattgttcttttcccacagc
catgtatagaatgaagacactcttatatcttgtccaaaacaattcctctc
ccatctacccacagCTTCCTGAAGGAGCAGACCGAGCCCGCTGCCCTCAT
CGCGGATTTCTTGTCTGTCCAAGAGCGCTTAGCCTTTTTGCAGACTCACA
Agtacgttgcatatgtatgacgtatctccgtttcattcgctggtgttgga
tgtagtactggactcttttaccgacacgcttgtcctcttctcataccaca
cgacctgtctgcatacccatgtctctctctgaatgggaccgatcccccac
ctcctcaacacctgattatgtcctaaccatgctccaattgaagcactgga
tacgcatcttccagcgaattatttataacgtctcactctcaacacacacg
cggtgacctactcactgactcacctttgcaccacaaccacgactaacgaa
cagAGTGGGTCTTCCTCCAAAGCTTCTCAAGCCCCTCCTCTTCAAAGGGC
CCTCCCGGGAGCTCAACTTTTTGTGCTGTCCAACTACTACCGCTGCCGTC
GAAAACCCTTCCTCTTTGAACACCAATTATGACAACCCTGTGGTCGCAAA
TGGTGCGGGGATGGTAGATAAGAACGAGCAGGGAAAGTGCTTCCAACTCG
AGGTGCGGTATCGGGGCAGCGTATTGTCCCGGGCCGTGCCCTTGCCGCTG
GTAGCCACTGCCCTTCACCGGGTGATTCGAAGCTGGCTTGACAATCGCTT
GCGCAAGCAAGGCTTTCCTTTGATCCTGGCCATGGTGAATAAGCTCCTTT
CCGTCTTCCGACCTACGGAAGAGGTCTGGTATGCAATTGTGAATAATTGC
GGAGAGGACGGGGCCTCCCTTCTTACGTATGCCTGCGCAGACCCCTCTAT
TCCACTCCCCATCATCGAGCAACTTCTTGAAATTCCATGCCTTGATCTGG
GCCTCCCTGACCGAAAGAGTGGACTCAATGCTATTCAGCTTGCACACACC
AAAAACCGTCAAGAGCTGCTCGTCTACTTTGCATCATTGGTCGGTTTCTA
AATATTCCCGTGGAAAATGATTCGGTCCGCTGCGAGCTTTGGTAGCGTGG
CAGAATCGCGCCATGACTTCCCCCGGACATTTGCGAAGGGGCTTTCACAC
GAGGTCAAAATAAATGTGCAACGCAAGAAGAAGAAATAATCGGATTTGTA
AAGGTGTGTGTCGGCATTGAGCTGGTCAAGCACAACAAAAAACCCATTAT
GCA
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protein sequence of NO15G01270.1

>NO15G01270.1-protein ID=NO15G01270.1-protein|Name=NO15G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MGAKHSIVAIVPEPLELQSGPDGSSIHAELLPKAYRHLSQFPVLGKKARG
PIRPYPNENVTHFLKEQTEPAALIADFLSVQERLAFLQTHKVGLPPKLLK
PLLFKGPSRELNFLCCPTTTAAVENPSSLNTNYDNPVVANGAGMVDKNEQ
GKCFQLEVRYRGSVLSRAVPLPLVATALHRVIRSWLDNRLRKQGFPLILA
MVNKLLSVFRPTEEVWYAIVNNCGEDGASLLTYACADPSIPLPIIEQLLE
IPCLDLGLPDRKSGLNAIQLAHTKNRQELLVYFASLVGF*
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Synonyms
Publications