NO15G01270.1, NO15G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01270.1
Unique NameNO15G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1616
Alignment locationchr15:358138..360190 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:358138..360190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01270.1 vs.
Match: EWM22492.1 (hypothetical protein Naga_100011g48 [Nannochloropsis gaditana])

HSP 1 Score: 359.4 bits (921), Expect = 1.100e-95
Identity = 180/288 (62.50%), Postives = 212/288 (73.61%), Query Frame = 0 
Query:    1 MGAKHSIVAIVPEPLELQSGPDGSSIHAELLPKAYRHLSQFPVLGKKARGPIRPYPNENVTHFLKEQTEPAALIADFLSVQERLAFLQTHKVGLPPKLLKPLLFKGPSRELNFLCCPTTTAAVENPSSLNTNYDNPVVANGAGMVDKNEQGKCFQLEVRYRGSVLSRAVPLPLVATALHRVIRSWLDNRLRKQGFPLILAMVNKLLSVFRPTEEVWYAIVNNCGEDGASLLTYACADPSIPLPIIEQLLEIPCLDLGLPDRKSGLNAIQLAHTKNRQELLVYFASLVG 289
            MG   SI A  PEPLE       S      LPKAYRHL  FPVL K+ARGPIR +PNE +THFLKEQ   A LIAD+LSV+ERL FLQTHKVGLPPK LK LLF GPSREL FL  P TTA VE    ++++++N +      +   N  G  FQLE+RYRGS LSRAVPL LV+TALHRVIRSW+D+ LRK+GF  +L MVN+LLSVFRPTEEVWY I+N+ G+DG +LLTYAC+    PL +IE+LL+IPC DL LPD K GLNAIQLAH  +RQ++L +FASLVG
Sbjct:    1 MGGGQSIAAAAPEPLEFTMSSSAS------LPKAYRHLCHFPVLAKQARGPIRHHPNERITHFLKEQDATALLIADYLSVRERLVFLQTHKVGLPPKHLKHLLFSGPSRELKFLYSPATTAMVEGKHPVSSSFNNNLKETKTEIYATNNFGNTFQLEIRYRGSFLSRAVPLSLVSTALHRVIRSWMDDTLRKRGFSTLLTMVNRLLSVFRPTEEVWYTIINSFGKDGTTLLTYACSSRDTPLSVIEKLLQIPCFDLALPDHKFGLNAIQLAHMHDRQDVLAHFASLVG 282
The following BLAST results are available for this feature:
BLAST of NO15G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22492.11.100e-9562.50hypothetical protein Naga_100011g48 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01270NO15G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01270.1NO15G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01270.1.cds1NO15G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01270.1.cds2NO15G01270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01270.1.cds3NO15G01270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01270.1 ID=NO15G01270.1|Name=NO15G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp
CACATGTTCCAGTTTTCACTCACCTCAGCCCTTCGCTTTTGAGGTTCGGC
TTAAACTGATGCTCCTCGAGTGGTCCCGACAGTTGCATAGGCATATTTCA
TTGTCTAGGCGGTGACGGGTCATGCCCACGCTTGTTTCTTTAGAAGCGTG
CAAATAAGACGCCCTTCAACGCTTTACCCTCCGCGCTCACCACGTGTGAA
AGTAGGAGCCCTTCTTATCAACAGCTACGCGTGGGTTGTTGGCTGACCTC
GACGGGGAAGACAGCCGGGACTGACATGTGTGTGCCCTTGCCTACGTGAT
CTGACTCGTCGACAAGTGACACAATTGCCTCATAAAGTCATGATTGGCTG
TAACACATGGCATGTCAACTCGCCTTCTGGGGGCGATTTACTCGGAGCAA
TGCCCTCAAGTGACAGCTTTTTGACCCGCGGTTCGTTTCTGTCTGGATTC
TGCGTTACTCCCACCAGGACTCACACTGTTCTTTTCAATTCCCACACTCA
GACATTTAACCACTGCCACCACAACCCCCTCTACCGGACACGATATGGGG
GCCAAGCACTCCATCGTGGCCATCGTGCCCGAACCTCTCGAGCTGCAAAG
CGGTCCAGATGGCTCGTCCATCCATGCAGAATTGCTCCCCAAGGCCTACC
GCCACCTGAGCCAATTTCCCGTGCTGGGCAAGAAGGCTCGGGGCCCCATT
CGCCCATACCCAAACGAGAATGTAACGCACTTCCTGAAGGAGCAGACCGA
GCCCGCTGCCCTCATCGCGGATTTCTTGTCTGTCCAAGAGCGCTTAGCCT
TTTTGCAGACTCACAAAGTGGGTCTTCCTCCAAAGCTTCTCAAGCCCCTC
CTCTTCAAAGGGCCCTCCCGGGAGCTCAACTTTTTGTGCTGTCCAACTAC
TACCGCTGCCGTCGAAAACCCTTCCTCTTTGAACACCAATTATGACAACC
CTGTGGTCGCAAATGGTGCGGGGATGGTAGATAAGAACGAGCAGGGAAAG
TGCTTCCAACTCGAGGTGCGGTATCGGGGCAGCGTATTGTCCCGGGCCGT
GCCCTTGCCGCTGGTAGCCACTGCCCTTCACCGGGTGATTCGAAGCTGGC
TTGACAATCGCTTGCGCAAGCAAGGCTTTCCTTTGATCCTGGCCATGGTG
AATAAGCTCCTTTCCGTCTTCCGACCTACGGAAGAGGTCTGGTATGCAAT
TGTGAATAATTGCGGAGAGGACGGGGCCTCCCTTCTTACGTATGCCTGCG
CAGACCCCTCTATTCCACTCCCCATCATCGAGCAACTTCTTGAAATTCCA
TGCCTTGATCTGGGCCTCCCTGACCGAAAGAGTGGACTCAATGCTATTCA
GCTTGCACACACCAAAAACCGTCAAGAGCTGCTCGTCTACTTTGCATCAT
TGGTCGGTTTCTAAATATTCCCGTGGAAAATGATTCGGTCCGCTGCGAGC
TTTGGTAGCGTGGCAGAATCGCGCCATGACTTCCCCCGGACATTTGCGAA
GGGGCTTTCACACGAGGTCAAAATAAATGTGCAACGCAAGAAGAAGAAAT
AATCGGATTTGTAAAGGTGTGTGTCGGCATTGAGCTGGTCAAGCACAACA
AAAAACCCATTATGCA
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protein sequence of NO15G01270.1

>NO15G01270.1-protein ID=NO15G01270.1-protein|Name=NO15G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MGAKHSIVAIVPEPLELQSGPDGSSIHAELLPKAYRHLSQFPVLGKKARG
PIRPYPNENVTHFLKEQTEPAALIADFLSVQERLAFLQTHKVGLPPKLLK
PLLFKGPSRELNFLCCPTTTAAVENPSSLNTNYDNPVVANGAGMVDKNEQ
GKCFQLEVRYRGSVLSRAVPLPLVATALHRVIRSWLDNRLRKQGFPLILA
MVNKLLSVFRPTEEVWYAIVNNCGEDGASLLTYACADPSIPLPIIEQLLE
IPCLDLGLPDRKSGLNAIQLAHTKNRQELLVYFASLVGF*
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mRNA from alignment at chr15:358138..360190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01270.1 ID=NO15G01270.1|Name=NO15G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at chr15:358138..360190- (Nannochloropsis oceanica)
CACATGTTCCAGTTTTCACTCACCTCAGCCCTTCGCTTTTGAGGTTCGGC
TTAAACTGATGCTCCTCGAGTGGTCCCGACAGTTGCATAGGCATATTTCA
TTGTCTAGGCGGTGACGGGTCATGCCCACGCTTGTTTCTTTAGAAGCGTG
CAAATAAGACGCCCTTCAACGCTTTACCCTCCGCGCTCACCACGTGTGAA
AGTAGGAGCCCTTCTTATCAACAGCTACGCGTGGGTTGTTGGCTGACCTC
GACGGGGAAGACAGCCGGGACTGACATGTGTGTGCCCTTGCCTACGTGAT
CTGACTCGTCGACAAGTGACACAATTGCCTCATAAAGTCATGATTGGCTG
TAACACATGGCATGTCAACTCGCCTTCTGGGGGCGATTTACTCGGAGCAA
TGCCCTCAAGTGACAGCTTTTTGACCCGCGGTTCGTTTCTGTCTGGATTC
TGCGTTACTCCCACCAGGACTCACACTGTTCTTTTCAATTCCCACACTCA
GACATTTAACCACTGCCACCACAACCCCCTCTACCGGACACGATATGGGG
GCCAAGCACTCCATCGTGGCCATCGTGCCCGAACCTCTCGAGCTGCAAAG
CGGTCCAGATGGCTCGTCCATCCATGCAGAATTGCTCCCCAAGGCCTACC
GCCACCTGAGCCAATTTCCCGTGCTGGGCAAGAAGGCTCGGGGCCCCATT
CGCCCATACCCAAACGAGAATGTAACGCAGTGAGTCATACGTGTTAGGGG
GAGCAAGAGGAAGAAAGGCTCAATGACAAAGATTGTTCTTTTCCCACAGC
CATGTATAGAATGAAGACACTCTTATATCTTGTCCAAAACAATTCCTCTC
CCATCTACCCACAGCTTCCTGAAGGAGCAGACCGAGCCCGCTGCCCTCAT
CGCGGATTTCTTGTCTGTCCAAGAGCGCTTAGCCTTTTTGCAGACTCACA
AGTACGTTGCATATGTATGACGTATCTCCGTTTCATTCGCTGGTGTTGGA
TGTAGTACTGGACTCTTTTACCGACACGCTTGTCCTCTTCTCATACCACA
CGACCTGTCTGCATACCCATGTCTCTCTCTGAATGGGACCGATCCCCCAC
CTCCTCAACACCTGATTATGTCCTAACCATGCTCCAATTGAAGCACTGGA
TACGCATCTTCCAGCGAATTATTTATAACGTCTCACTCTCAACACACACG
CGGTGACCTACTCACTGACTCACCTTTGCACCACAACCACGACTAACGAA
CAGAGTGGGTCTTCCTCCAAAGCTTCTCAAGCCCCTCCTCTTCAAAGGGC
CCTCCCGGGAGCTCAACTTTTTGTGCTGTCCAACTACTACCGCTGCCGTC
GAAAACCCTTCCTCTTTGAACACCAATTATGACAACCCTGTGGTCGCAAA
TGGTGCGGGGATGGTAGATAAGAACGAGCAGGGAAAGTGCTTCCAACTCG
AGGTGCGGTATCGGGGCAGCGTATTGTCCCGGGCCGTGCCCTTGCCGCTG
GTAGCCACTGCCCTTCACCGGGTGATTCGAAGCTGGCTTGACAATCGCTT
GCGCAAGCAAGGCTTTCCTTTGATCCTGGCCATGGTGAATAAGCTCCTTT
CCGTCTTCCGACCTACGGAAGAGGTCTGGTATGCAATTGTGAATAATTGC
GGAGAGGACGGGGCCTCCCTTCTTACGTATGCCTGCGCAGACCCCTCTAT
TCCACTCCCCATCATCGAGCAACTTCTTGAAATTCCATGCCTTGATCTGG
GCCTCCCTGACCGAAAGAGTGGACTCAATGCTATTCAGCTTGCACACACC
AAAAACCGTCAAGAGCTGCTCGTCTACTTTGCATCATTGGTCGGTTTCTA
AATATTCCCGTGGAAAATGATTCGGTCCGCTGCGAGCTTTGGTAGCGTGG
CAGAATCGCGCCATGACTTCCCCCGGACATTTGCGAAGGGGCTTTCACAC
GAGGTCAAAATAAATGTGCAACGCAAGAAGAAGAAATAATCGGATTTGTA
AAGGTGTGTGTCGGCATTGAGCTGGTCAAGCACAACAAAAAACCCATTAT
GCA
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Coding sequence (CDS) from alignment at chr15:358138..360190-

>NO15G01270.1 ID=NO15G01270.1|Name=NO15G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr15:358138..360190- (Nannochloropsis oceanica)
ATGGGGGCCAAGCACTCCATCGTGGCCATCGTGCCCGAACCTCTCGAGCT
GCAAAGCGGTCCAGATGGCTCGTCCATCCATGCAGAATTGCTCCCCAAGG
CCTACCGCCACCTGAGCCAATTTCCCGTGCTGGGCAAGAAGGCTCGGGGC
CCCATTCGCCCATACCCAAACGAGAATGTAACGCACTTCCTGAAGGAGCA
GACCGAGCCCGCTGCCCTCATCGCGGATTTCTTGTCTGTCCAAGAGCGCT
TAGCCTTTTTGCAGACTCACAAAGTGGGTCTTCCTCCAAAGCTTCTCAAG
CCCCTCCTCTTCAAAGGGCCCTCCCGGGAGCTCAACTTTTTGTGCTGTCC
AACTACTACCGCTGCCGTCGAAAACCCTTCCTCTTTGAACACCAATTATG
ACAACCCTGTGGTCGCAAATGGTGCGGGGATGGTAGATAAGAACGAGCAG
GGAAAGTGCTTCCAACTCGAGGTGCGGTATCGGGGCAGCGTATTGTCCCG
GGCCGTGCCCTTGCCGCTGGTAGCCACTGCCCTTCACCGGGTGATTCGAA
GCTGGCTTGACAATCGCTTGCGCAAGCAAGGCTTTCCTTTGATCCTGGCC
ATGGTGAATAAGCTCCTTTCCGTCTTCCGACCTACGGAAGAGGTCTGGTA
TGCAATTGTGAATAATTGCGGAGAGGACGGGGCCTCCCTTCTTACGTATG
CCTGCGCAGACCCCTCTATTCCACTCCCCATCATCGAGCAACTTCTTGAA
ATTCCATGCCTTGATCTGGGCCTCCCTGACCGAAAGAGTGGACTCAATGC
TATTCAGCTTGCACACACCAAAAACCGTCAAGAGCTGCTCGTCTACTTTG
CATCATTGGTCGGTTTCTAA
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Synonyms
Publications