NO15G01260, NO15G01260 (gene) Nannochloropsis oceanica

Overview
NameNO15G01260
Unique NameNO15G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1288
Alignment locationchr15:356530..357817 +

Link to JBrowse

Properties
Property NameValue
DescriptionThioesterase type II, NRPS/PKS/S-FAS
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:356530..357817 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016788hydrolase activity, acting on ester bonds
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR012223TEII
IPR001031Thioesterase
Homology
BLAST of NO15G01260 vs. NCBI_GenBank
Match: EWM22473.1 (Thioesterase type II, NRPS/PKS/S-FAS [Nannochloropsis gaditana])

HSP 1 Score: 457.2 bits (1175), Expect = 3.700e-125
Identity = 210/281 (74.73%), Postives = 244/281 (86.83%), Query Frame = 0
Query:    2 ATTLEVPVVSDEVVKAWLPMYKPIDKPRLRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYNADVRDDWFESITDFLTGEGF 283
            +T L + V SDE +KAWLPMYKP+DK RLRILCFPSAGSAENIYTG AVR  +R PNKL++WA DA+AE+LA+QYPGREQRRKEPF+K+CQAMAAA+ PV+Q KL++EDVPYV++AHSCG+WIAYE+L L++   MPMP MFFVSCMASPDIAASAKPWK N+EM+V+QLQAECRLWDVNE+VFRPDVWP FEPLLRADF+LFDQY    E F  F+FPIH Y A+ DRKIS+KMVEGW+ FT SDFD++L+QGNHLFVYNAD RD WFESITD L  EGF
Sbjct:   48 STALTMTVSSDE-IKAWLPMYKPLDKVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLLVAEGF 327          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: PRW20885.1 (Monothiol glutaredoxin- chloroplastic [Chlorella sorokiniana])

HSP 1 Score: 241.9 bits (616), Expect = 2.400e-60
Identity = 119/272 (43.75%), Postives = 169/272 (62.13%), Query Frame = 0
Query:    8 PVVSDEVVKAWLP----MYKPIDKPRLRILCFPSAGSAENIYT--GLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYNADVRDDWFESI 274
            P    E  + W P         D PRLR+LCFP+AG+AE++YT  G  VR   R P+ L+ W     AE LAVQ PGR  R +EP   +C+ +AAAL PV+  +L   D PYV+VAHS G+W+AYELL+ ++A  +PMP   F+S MASPDI    +PW+  + +   Q + ECR WDVNE+VF   +W T++PL+RADF+LFD+Y     G  PF FP+  ++ + DR+I + +V+GW RFTT  F++  ++G+HL+  +   +  W   I
Sbjct:  379 PPPDAETFRKWFPGLALSRTACDNPRLRVLCFPNAGNAEDMYTSEGTGVR---RAPSPLLDWCRANVAECLAVQPPGRNTRSREPPFTACRDLAAALLPVVASRLL--DAPYVVVAHSVGTWVAYELLRAVQAAGLPMPTKVFLSAMASPDIPWDQRPWRQQRGLDEEQFKEECRGWDVNELVFSAALWGTYQPLMRADFTLFDEYEHTHGGQPPFAFPLITFWGSRDRRIKQHLVQGWSRFTTGAFELHEMEGHHLWPLDKASKAVWLGQI 645          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: XP_005643908.1 (alpha/beta-hydrolase [Coccomyxa subellipsoidea C-169] >EIE19364.1 alpha/beta-hydrolase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 241.1 bits (614), Expect = 4.100e-60
Identity = 114/272 (41.91%), Postives = 165/272 (60.66%), Query Frame = 0
Query:   10 VSDEVVKAWLP----MYKPIDKPRLRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYNADVRDDWFESITDFL 278
            V D   + W P           PR R++CFP+AG+AE++YT      + +  + L+ W  +  AE LAVQ PGR  R KEP + +C+ MAAAL PV+ PKL   D PY+++ HS G+W A+E L L ++  +PMP+  F+S MA+P+I    +PW+    +S A  + ECR WDVNEV+F P +WPT+  L+RADF+LFD+Y F   G  PF FPI  +F  +DR+I  +MV  W RFTT  F+   ++G+HL+    + +  W  +I + L
Sbjct:   21 VDDAEFRKWFPGLLLSRTSCPHPRWRVVCFPNAGNAEDMYTSEGTGAR-KVSSPLLEWCRENDAECLAVQPPGRNMRMKEPCITTCRHMAAALLPVLAPKLL--DTPYIVIGHSVGTWNAFEFLMLAQSEGVPMPRHVFLSAMAAPNIPTEQRPWRRQHSLSEADFKEECRAWDVNEVLFTPALWPTYHSLMRADFTLFDEYEFTHTGASPFAFPITSFFGTSDRRIKEEMVVRWARFTTGGFECLPIEGHHLWPLVKESKVLWLGAIVERL 289          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: XP_011400243.1 (Gramicidin S biosynthesis protein GrsT [Auxenochlorella protothecoides] >KFM27276.1 Gramicidin S biosynthesis protein GrsT [Auxenochlorella protothecoides])

HSP 1 Score: 228.0 bits (580), Expect = 3.600e-56
Identity = 116/294 (39.46%), Postives = 162/294 (55.10%), Query Frame = 0
Query:    8 PVVSDEVVKAWLP----MYKPIDKPRLRILCFPSAGSAENIYT--GLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMS----------------VAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYNADVRDDWFESITDFLTG 280
            P    EV + W P         +KP L +LCFPSAG++E+ YT  G  VR   R P+ L+ W     AE LAVQ PGR  R K  F  S  ++A  L PV+  +L     PYVIV HS G+W+A+ELL   R   +P+P    +S + +PDI    +PW+  + +                  +++Q ECR W V+E++F P +WPT++P++RADF LFD+Y F   G  PF+FPIH Y+   D +I + MVEGWQRFT+  F    + GNHL++ +   +  W  SI   L G
Sbjct:   38 PPPEAEVFRTWFPGLPLSRTASEKPALLVLCFPSAGTSEDTYTSEGTGVR---RAPSPLLDWCRANNAECLAVQPPGRNLRSKHAFADSAASLAKELLPVVASRL--ASTPYVIVGHSLGTWLAFELLSAARDAGLPLPLHASLSALCAPDIPFDQRPWRQQRTLGEEDFKARGSMVLPLCVPSRVQEECRGWSVSEILFTPALWPTYQPIMRADFRLFDEYEFTRAGEAPFDFPIHAYWGTGDLRIKQWMVEGWQRFTSGSFACTPIDGNHLWIQDKAAKQAWLASIAKDLEG 326          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: CEM25340.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 226.5 bits (576), Expect = 1.000e-55
Identity = 115/263 (43.73%), Postives = 157/263 (59.70%), Query Frame = 0
Query:   26 DKPRLRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGRE-QRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRAR------------DMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRF--TTSDFDVDLVQGNHLFVYNADVRDDWFESI 274
            + PR R+LC  SAGSAE IYT      ++  PN L+ W +D + E+LA Q PGR   R KEP + S Q  A  L+ V+ P    + V Y IV HS G+WIA+ELL L+R +             +P+PK  F SCM +PD  A  +PW+ NK+++  Q + EC  WDVN+ VF  D+W  + PLLR DF++FD YTF  +G  PF+ PI  ++A  DRKIS +MV  WQRF   +S F +  + G+HLFVY++  R  W + I
Sbjct:   17 ENPRFRVLCLHSAGSAETIYTNKG-SPRRPYPNPLLQWCIDNEVELLAAQLPGRPGPRAKEPRITSAQEAAKRLYEVMTPHF-ADGVSYAIVGHSVGTWIAFELLCLIREKLKQQETTSTTTPQVPLPKHLFFSCMVAPDWPADKRPWRQNKDLNEEQFKEECGHWDVNKEVF--DMWDVYGPLLRDDFTIFDCYTFTHDGCQPFDIPITAWYAKRDRKISEEMVSAWQRFVKNSSKFTLSSIDGHHLFVYDSGARTAWMDQI 275          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: PNW78637.1 (hypothetical protein CHLRE_09g388900v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 218.8 bits (556), Expect = 2.200e-53
Identity = 105/263 (39.92%), Postives = 152/263 (57.79%), Query Frame = 0
Query:   28 PRLRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTFASEGFCPF----------------NFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYN-ADVRDDWFESI 274
            PR+R+L F S+G+AE+++T      + R  + L+ W      E+LAVQ PGR  R +EPF+ S Q  AA L PV+ P L + +VPY +V+HS G W+A+ELL+  RA  +P P  + +S M +PD+  + +PW+  + +  A  Q E R WDVNEVVF PD+W  +EP+LRADF LFD+Y     G  P                 + PI  ++   DR+++  ++EGWQRFTT  F +  V GNHL+  N  D +  W   +
Sbjct:  242 PRMRVLAFHSSGNAEDMWTSEGTGAR-RAKSPLLEWCRGRDVELLAVQLPGRAARLREPFLDSAQDFAAQLLPVLAPLLAQRNVPYALVSHSLGCWLAFELLRAARAARLPAPAAWCLSAMPAPDLPEAQRPWRQQRSLGTADFQEEVRGWDVNEVVFSPDMWQMYEPILRADFKLFDEYQMLPSGSSPVAVGRTGGALHDVAVFDDLPITAFYGTRDRRVTPALMEGWQRFTTGPFQLLAVPGNHLWPLNDRDSKAAWLACV 503          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: XP_005773272.1 (hypothetical protein EMIHUDRAFT_241727 [Emiliania huxleyi CCMP1516] >EOD20843.1 hypothetical protein EMIHUDRAFT_241727 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 214.9 bits (546), Expect = 3.200e-52
Identity = 111/277 (40.07%), Postives = 157/277 (56.68%), Query Frame = 0
Query:   10 VSDEVVKAWLPMYK-PIDKPRLRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVW---PTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYNADVRDDWFESITDFLTGEGF 283
            V D   K W P +K P   P+ R++CF +AGSAE+ YTG  +R      N  +    +   E+LAV+ PGRE RR EP  ++    A ALFPV+ PKL  E VPYV+V HS G+W+ +E LKLL AR + +P+   VS   +P + A+ +PW++NK M     + ECR W    VVF   +W   P +E L+R DF+LFD Y +A         P+  Y+A +D+ +    V  W+  T  DF ++ V GNHLF Y  DVR+ W + + + L  +GF
Sbjct:   70 VDDATFKKWFPKWKPPAATPKFRLVCFHNAGSAESNYTGKGLR--MPNDNPFVVACNERGGELLAVELPGRESRRAEPRYRTLSVAAEALFPVLAPKL-NESVPYVVVGHSMGTWMLFETLKLLMARGVRLPEQVVVSSFPAPSLPAAKRPWRANKGMDDDAFKEECRTW---SVVFSAGMWTKGPNYEALMRDDFTLFDAYEYAPAVAPQLPMPVSAYYARDDKNVKESHVATWKDMTCKDFRLEEVPGNHLFFYQYDVRNKWMDRVVESLP-DGF 339          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: XP_005782941.1 (hypothetical protein EMIHUDRAFT_232873 [Emiliania huxleyi CCMP1516] >EOD30512.1 hypothetical protein EMIHUDRAFT_232873 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 214.9 bits (546), Expect = 3.200e-52
Identity = 111/277 (40.07%), Postives = 157/277 (56.68%), Query Frame = 0
Query:   10 VSDEVVKAWLPMYK-PIDKPRLRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVW---PTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYNADVRDDWFESITDFLTGEGF 283
            V D   K W P +K P   P+ R++CF +AGSAE+ YTG  +R      N  +    +   E+LAV+ PGRE RR EP  ++    A ALFPV+ PKL  E VPYV+V HS G+W+ +E LKLL AR + +P+   VS   +P + A+ +PW++NK M     + ECR W    VVF   +W   P +E L+R DF+LFD Y +A         P+  Y+A +D+ +    V  W+  T  DF ++ V GNHLF Y  DVR+ W + + + L  +GF
Sbjct:   70 VDDATFKKWFPKWKPPAATPKFRLVCFHNAGSAESNYTGKGLR--MPNDNPFVVACNERGGELLAVELPGRESRRAEPRYRTLSVAAEALFPVLAPKL-NESVPYVVVGHSMGTWMLFETLKLLMARGVRLPEQVVVSSFPAPSLPAAKRPWRANKGMDDDAFKEECRTW---SVVFSAGMWTKGPNYEALMRDDFTLFDAYEYAPAVAPQLPMPVSAYYARDDKNVKESHVATWKDMTCKDFRLEEVPGNHLFFYQYDVRNKWMDRVVESLP-DGF 339          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: XP_003074702.1 (Thioesterase [Ostreococcus tauri] >CAL50552.1 Thioesterase [Ostreococcus tauri] >OUS42341.1 thioesterase [Ostreococcus tauri])

HSP 1 Score: 213.0 bits (541), Expect = 1.200e-51
Identity = 100/247 (40.49%), Postives = 150/247 (60.73%), Query Frame = 0
Query:   27 KPRLRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYNADVRDDWFESI 274
            KPR+R+LCFP+AG+ E+++T      + R  + L+ W    + EVLAVQYPGR  R+ EP+      +   L PV+ PKL  ++ P+VI+ HS GSW+A+E ++L+R+R M MP+  F+S    PDI    +PW  N  +     + ECR WDVNE+VF P +W  +  L+RADF LFD+Y +A  G   F +P+  ++  +DR I+R+M   W+  TT +F++  + G+HLF    D +  W E I
Sbjct:   76 KPRMRVLCFPNAGNQEDMFTSEGTGPR-RQSSALLEWCKSNECEVLAVQYPGRANRKSEPYAFDIADITVPLLPVVGPKL--QECPFVIIGHSVGSWVAFEFMQLMRSRGMRMPEHVFLSAFPFPDIPHRDRPWHVNVLLDEDAFKEECRRWDVNELVFGP-LWEVYHDLMRADFHLFDKYDYAHSGKENFAWPLTMFYGESDRMITREMCAFWETHTTGEFELVNIPGHHLFPLQKDQKAMWLEKI 318          
BLAST of NO15G01260 vs. NCBI_GenBank
Match: XP_013906311.1 (short-chain dehydrogenase/reductase SDR [Monoraphidium neglectum] >KIZ07292.1 short-chain dehydrogenase/reductase SDR [Monoraphidium neglectum])

HSP 1 Score: 211.8 bits (538), Expect = 2.700e-51
Identity = 115/289 (39.79%), Postives = 160/289 (55.36%), Query Frame = 0
Query:   15 VKAWLPMYKPIDKPR---LRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTF-----------------ASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQG-NHLFV-YNADVRDDWFESITDFLTGEG 282
            V+ W P  +   K R     +L FP++GSAE++Y+      + R P+ L+ W   + A + AVQ PGR  R +EP +    A+AAAL PV  P L      Y +V HS G+W AYE L+L R+R +PMP   F+S M +PDI    +PW+    ++  + + ECR WD+NEVVF PD+WPTFEPLLRADF LFD+Y                    + G  PF FP+  ++   DR+I  +MV+GW RFT   F V  ++G NHL+   N   + +W E I   + G G
Sbjct:  342 VRRWFPALRSHQKLRNAHTIVLAFPNSGSAEDLYSSEGTGAR-RAPSPLLDWCQTSGAVLTAVQPPGRGLRAREPPLPDLAALAAALLPVAAPALLAAG-RYFVVGHSVGAWAAYEFLQLARSRGLPMPAGAFLSAMPAPDIPEEERPWRRQALLTDEEFKDECRQWDINEVVFSPDLWPTFEPLLRADFRLFDEYHHRHPXXXXXPPSLGWSVPEAAGAPPFAFPVTAFWGDEDRRIGERMVQGWARFTRGPFAVVRLRGANHLWPGNNRAAKREWLERIVAGMQGTG 628          
The following BLAST results are available for this feature:
BLAST of NO15G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22473.13.700e-12574.73Thioesterase type II, NRPS/PKS/S-FAS [Nannochlorop... [more]
PRW20885.12.400e-6043.75Monothiol glutaredoxin- chloroplastic [Chlorella s... [more]
XP_005643908.14.100e-6041.91alpha/beta-hydrolase [Coccomyxa subellipsoidea C-1... [more]
XP_011400243.13.600e-5639.46Gramicidin S biosynthesis protein GrsT [Auxenochlo... [more]
CEM25340.11.000e-5543.73unnamed protein product [Vitrella brassicaformis C... [more]
PNW78637.12.200e-5339.92hypothetical protein CHLRE_09g388900v5 [Chlamydomo... [more]
XP_005773272.13.200e-5240.07hypothetical protein EMIHUDRAFT_241727 [Emiliania ... [more]
XP_005782941.13.200e-5240.07hypothetical protein EMIHUDRAFT_232873 [Emiliania ... [more]
XP_003074702.11.200e-5140.49Thioesterase [Ostreococcus tauri] >CAL50552.1 Thio... [more]
XP_013906311.12.700e-5139.79short-chain dehydrogenase/reductase SDR [Monoraphi... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001480NSK001480Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01260.1NO15G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587436gene_4670Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g47gene7977Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01260.1NO15G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01260 ID=NO15G01260|Name=NO15G01260|organism=Nannochloropsis oceanica|type=gene|length=1288bp
ATGgtaagtggacaagggaacccgtcgcgatttctaccttcacgctctcc
ttcccctgtgtacctcaccaacacttagGCGACGACTTTAGAGGTCCCAG
TAGTGTCCGACGAGGTCGTCAAGGCCTGGCTACCCATGTACAAGCCTATA
GATAAGCCTCGGCTTCGTATTTTGTGCTTTCCCAGCGCGGGAAGCGCCGA
GAACATCTATACGGGGTTGGCAGTCCGGGAGAAGCAACGGACGCCCAACA
AGCTCATGGCTTGGGCCGTAGACGCCCAAGCCGAGGTGCTAGCCGTCCAG
TACCCCGGTCGGGAACAGCGACGAAAAGAGCCTTTTGTTAAGAGCTGTCA
GGCAATGGCGGCAGCCCTCTTTCCTGTCATCCAACCCAAGCTGCGGAAGG
AGGACGTGCCCTACGTTATTGTCGCGCACAGCTGTGGGAGTTGGATCGCA
TACGAGTTGCTGAAGCTGCTGCGGGCACGGGACATGCCCATGCCCAAGAT
GTTTTTTGTGTCGTGCATGGCCTCTCCGGACATTGCAGCGAGTGCCAAGg
tgagtaagtggggggtttgggttggagagacagaccgctttgtgaggcct
ctcggggatgagggcgtgcgtaggttgacgatccaccatacgtgtacaca
tatccatgcataagttcttatttctccatttactcattatccctacagCC
GTGGAAGTCGAACAAGGAGATGAGCGTGGCCCAGCTACAAGCCGAGTGCC
GCCTGTGGGATGTGAATGAGGTGGTCTTTCGCCCAGACGTCTGGCCCACC
TTTGAGCCTCTTCTTCGCGCGGATTTTTCGCTCTTTGATCAGTACACATT
TGCCTCTGAGGgtaagcagcagagagaggatggagtgtgtttgcacgatg
ccagctagctctgtgggcagaagtgatggagtcatcccggacattatttg
ttgcaagccgtgcttaaattcgttccttactcggcaaaatgcagGTTTTT
GCCCCTTCAATTTTCCCATTCACTGTTACTTTGCCGCAAATGATCGCAAG
ATTTCAAGGgtacgcacttacaaaaacagctttatgtcacccgatcaaac
actgctgcttcttattttttttaattctaacaacccaacagAAAATGGTG
GAGGGCTGGCAGAGGTTCACGACCTCGGACTTTGACGTGGATTTGGTGCA
GGGGAATCATCTCTTTGTTTACAATGCAGACGTGCGAGACGATTGGTTTG
AGAGCATTACGGACTTCCTAACGGGAGAAGGCTTTTAG
back to top

protein sequence of NO15G01260.1

>NO15G01260.1-protein ID=NO15G01260.1-protein|Name=NO15G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MATTLEVPVVSDEVVKAWLPMYKPIDKPRLRILCFPSAGSAENIYTGLAV
REKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFP
VIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMAS
PDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRAD
FSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDV
DLVQGNHLFVYNADVRDDWFESITDFLTGEGF*
back to top
Synonyms
Publications