NO15G01260.1, NO15G01260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01260.1
Unique NameNO15G01260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr15:356530..357817 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:356530..357817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01260.1 vs.
Match: EWM22473.1 (Thioesterase type II, NRPS/PKS/S-FAS [Nannochloropsis gaditana])

HSP 1 Score: 457.2 bits (1175), Expect = 3.700e-125
Identity = 210/281 (74.73%), Postives = 244/281 (86.83%), Query Frame = 0 
Query:    2 ATTLEVPVVSDEVVKAWLPMYKPIDKPRLRILCFPSAGSAENIYTGLAVREKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFPVIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMASPDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRADFSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDVDLVQGNHLFVYNADVRDDWFESITDFLTGEGF 283
            +T L + V SDE +KAWLPMYKP+DK RLRILCFPSAGSAENIYTG AVR  +R PNKL++WA DA+AE+LA+QYPGREQRRKEPF+K+CQAMAAA+ PV+Q KL++EDVPYV++AHSCG+WIAYE+L L++   MPMP MFFVSCMASPDIAASAKPWK N+EM+V+QLQAECRLWDVNE+VFRPDVWP FEPLLRADF+LFDQY    E F  F+FPIH Y A+ DRKIS+KMVEGW+ FT SDFD++L+QGNHLFVYNAD RD WFESITD L  EGF
Sbjct:   48 STALTMTVSSDE-IKAWLPMYKPLDKVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLLVAEGF 327
The following BLAST results are available for this feature:
BLAST of NO15G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22473.13.700e-12574.73Thioesterase type II, NRPS/PKS/S-FAS [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01260NO15G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01260.1NO15G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01260.1.cds1NO15G01260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01260.1.cds2NO15G01260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01260.1.cds3NO15G01260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01260.1.cds4NO15G01260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01260.1.cds5NO15G01260.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01260.1 ID=NO15G01260.1|Name=NO15G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ATGGCGACGACTTTAGAGGTCCCAGTAGTGTCCGACGAGGTCGTCAAGGC
CTGGCTACCCATGTACAAGCCTATAGATAAGCCTCGGCTTCGTATTTTGT
GCTTTCCCAGCGCGGGAAGCGCCGAGAACATCTATACGGGGTTGGCAGTC
CGGGAGAAGCAACGGACGCCCAACAAGCTCATGGCTTGGGCCGTAGACGC
CCAAGCCGAGGTGCTAGCCGTCCAGTACCCCGGTCGGGAACAGCGACGAA
AAGAGCCTTTTGTTAAGAGCTGTCAGGCAATGGCGGCAGCCCTCTTTCCT
GTCATCCAACCCAAGCTGCGGAAGGAGGACGTGCCCTACGTTATTGTCGC
GCACAGCTGTGGGAGTTGGATCGCATACGAGTTGCTGAAGCTGCTGCGGG
CACGGGACATGCCCATGCCCAAGATGTTTTTTGTGTCGTGCATGGCCTCT
CCGGACATTGCAGCGAGTGCCAAGCCGTGGAAGTCGAACAAGGAGATGAG
CGTGGCCCAGCTACAAGCCGAGTGCCGCCTGTGGGATGTGAATGAGGTGG
TCTTTCGCCCAGACGTCTGGCCCACCTTTGAGCCTCTTCTTCGCGCGGAT
TTTTCGCTCTTTGATCAGTACACATTTGCCTCTGAGGGTTTTTGCCCCTT
CAATTTTCCCATTCACTGTTACTTTGCCGCAAATGATCGCAAGATTTCAA
GGAAAATGGTGGAGGGCTGGCAGAGGTTCACGACCTCGGACTTTGACGTG
GATTTGGTGCAGGGGAATCATCTCTTTGTTTACAATGCAGACGTGCGAGA
CGATTGGTTTGAGAGCATTACGGACTTCCTAACGGGAGAAGGCTTTTAG
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protein sequence of NO15G01260.1

>NO15G01260.1-protein ID=NO15G01260.1-protein|Name=NO15G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MATTLEVPVVSDEVVKAWLPMYKPIDKPRLRILCFPSAGSAENIYTGLAV
REKQRTPNKLMAWAVDAQAEVLAVQYPGREQRRKEPFVKSCQAMAAALFP
VIQPKLRKEDVPYVIVAHSCGSWIAYELLKLLRARDMPMPKMFFVSCMAS
PDIAASAKPWKSNKEMSVAQLQAECRLWDVNEVVFRPDVWPTFEPLLRAD
FSLFDQYTFASEGFCPFNFPIHCYFAANDRKISRKMVEGWQRFTTSDFDV
DLVQGNHLFVYNADVRDDWFESITDFLTGEGF*
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mRNA from alignment at chr15:356530..357817+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01260.1 ID=NO15G01260.1|Name=NO15G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1288bp|location=Sequence derived from alignment at chr15:356530..357817+ (Nannochloropsis oceanica)
ATGGTAAGTGGACAAGGGAACCCGTCGCGATTTCTACCTTCACGCTCTCC
TTCCCCTGTGTACCTCACCAACACTTAGGCGACGACTTTAGAGGTCCCAG
TAGTGTCCGACGAGGTCGTCAAGGCCTGGCTACCCATGTACAAGCCTATA
GATAAGCCTCGGCTTCGTATTTTGTGCTTTCCCAGCGCGGGAAGCGCCGA
GAACATCTATACGGGGTTGGCAGTCCGGGAGAAGCAACGGACGCCCAACA
AGCTCATGGCTTGGGCCGTAGACGCCCAAGCCGAGGTGCTAGCCGTCCAG
TACCCCGGTCGGGAACAGCGACGAAAAGAGCCTTTTGTTAAGAGCTGTCA
GGCAATGGCGGCAGCCCTCTTTCCTGTCATCCAACCCAAGCTGCGGAAGG
AGGACGTGCCCTACGTTATTGTCGCGCACAGCTGTGGGAGTTGGATCGCA
TACGAGTTGCTGAAGCTGCTGCGGGCACGGGACATGCCCATGCCCAAGAT
GTTTTTTGTGTCGTGCATGGCCTCTCCGGACATTGCAGCGAGTGCCAAGG
TGAGTAAGTGGGGGGTTTGGGTTGGAGAGACAGACCGCTTTGTGAGGCCT
CTCGGGGATGAGGGCGTGCGTAGGTTGACGATCCACCATACGTGTACACA
TATCCATGCATAAGTTCTTATTTCTCCATTTACTCATTATCCCTACAGCC
GTGGAAGTCGAACAAGGAGATGAGCGTGGCCCAGCTACAAGCCGAGTGCC
GCCTGTGGGATGTGAATGAGGTGGTCTTTCGCCCAGACGTCTGGCCCACC
TTTGAGCCTCTTCTTCGCGCGGATTTTTCGCTCTTTGATCAGTACACATT
TGCCTCTGAGGGTAAGCAGCAGAGAGAGGATGGAGTGTGTTTGCACGATG
CCAGCTAGCTCTGTGGGCAGAAGTGATGGAGTCATCCCGGACATTATTTG
TTGCAAGCCGTGCTTAAATTCGTTCCTTACTCGGCAAAATGCAGGTTTTT
GCCCCTTCAATTTTCCCATTCACTGTTACTTTGCCGCAAATGATCGCAAG
ATTTCAAGGGTACGCACTTACAAAAACAGCTTTATGTCACCCGATCAAAC
ACTGCTGCTTCTTATTTTTTTTAATTCTAACAACCCAACAGAAAATGGTG
GAGGGCTGGCAGAGGTTCACGACCTCGGACTTTGACGTGGATTTGGTGCA
GGGGAATCATCTCTTTGTTTACAATGCAGACGTGCGAGACGATTGGTTTG
AGAGCATTACGGACTTCCTAACGGGAGAAGGCTTTTAG
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Coding sequence (CDS) from alignment at chr15:356530..357817+

>NO15G01260.1 ID=NO15G01260.1|Name=NO15G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr15:356530..357817+ (Nannochloropsis oceanica)
ATGGCGACGACTTTAGAGGTCCCAGTAGTGTCCGACGAGGTCGTCAAGGC
CTGGCTACCCATGTACAAGCCTATAGATAAGCCTCGGCTTCGTATTTTGT
GCTTTCCCAGCGCGGGAAGCGCCGAGAACATCTATACGGGGTTGGCAGTC
CGGGAGAAGCAACGGACGCCCAACAAGCTCATGGCTTGGGCCGTAGACGC
CCAAGCCGAGGTGCTAGCCGTCCAGTACCCCGGTCGGGAACAGCGACGAA
AAGAGCCTTTTGTTAAGAGCTGTCAGGCAATGGCGGCAGCCCTCTTTCCT
GTCATCCAACCCAAGCTGCGGAAGGAGGACGTGCCCTACGTTATTGTCGC
GCACAGCTGTGGGAGTTGGATCGCATACGAGTTGCTGAAGCTGCTGCGGG
CACGGGACATGCCCATGCCCAAGATGTTTTTTGTGTCGTGCATGGCCTCT
CCGGACATTGCAGCGAGTGCCAAGCCGTGGAAGTCGAACAAGGAGATGAG
CGTGGCCCAGCTACAAGCCGAGTGCCGCCTGTGGGATGTGAATGAGGTGG
TCTTTCGCCCAGACGTCTGGCCCACCTTTGAGCCTCTTCTTCGCGCGGAT
TTTTCGCTCTTTGATCAGTACACATTTGCCTCTGAGGGTTTTTGCCCCTT
CAATTTTCCCATTCACTGTTACTTTGCCGCAAATGATCGCAAGATTTCAA
GGAAAATGGTGGAGGGCTGGCAGAGGTTCACGACCTCGGACTTTGACGTG
GATTTGGTGCAGGGGAATCATCTCTTTGTTTACAATGCAGACGTGCGAGA
CGATTGGTTTGAGAGCATTACGGACTTCCTAACGGGAGAAGGCTTTTAG
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Synonyms
Publications