NO15G01230, NO15G01230 (gene) Nannochloropsis oceanica

Overview
NameNO15G01230
Unique NameNO15G01230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2625
Alignment locationchr15:346757..349381 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:346757..349381 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G01230 vs. NCBI_GenBank
Match: EWM22426.1 (hypothetical protein Naga_100011g44 [Nannochloropsis gaditana])

HSP 1 Score: 450.7 bits (1158), Expect = 9.900e-123
Identity = 272/476 (57.14%), Postives = 320/476 (67.23%), Query Frame = 0 
Query:  347 ISARALDLLNPRGTLPALAVTYDKEQVDILLLVSLVEPLLETPGGHELASHRWRALETRRLARLKVGHLASEALPRLILDPERHVHGTLYVVREQVVLRLVLPWIRRIEELGEGGDDVTSFRNGGRLGRRLPGKTRMVEVHRIGTGRAGGGGIKASAGICMVYNASVGSLLIVRRRDAEVEMLNLAILPFMVDXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSMASKDGRFSNFVSFETACLPDMERLRRGYDRFLQAVACPSGSDLAQLKQDLIQEVVIPLRALQTRMVVRADEVAVLFERAHAAAKALDNHLVELRAAYGRLQTRVADAENQLEKDELVAQMAAEQLHWVRTVITPQENRKFQEVRLAEARLRNLDERLGAVEEWARVQAKEEEDAGGRGVEGG------GNNRRAIEREFEEARRRLTREVEELIKDVAHMEGALSLDEGYFLGEQGGGRAPLLGELETLRIN 817
            +  RALDLLNP GTLPALAVT+DKE VD+LL VSLVEP L    G E     WRALE RRLARL  GH A E LPRL+ DPERH  G LY+VREQ VLRLVLPWIRR+EELG+ G ++    +G     R P + R+ EVHRIG+G   GG  + S G CMVY ASVGSLL+VRRRDAEVEMLNLAILPFMVD                            R   +++ RF NFV FE ACLPD+ERLRRGY+RFL AV     ++L +LKQDLIQEVVIPLRALQTRMVVR+DEVAVL+ERAHA AK LD  L E RAA  RL  RVA AE+QLE+DE VA++A E+LHWVR+VITPQE+R+FQEV+LAEARLRNL ERL +VE W           GG+  +GG         RRA E+E +  RR L  +V++L KDVA +E  L +DE     E   G + LL +  +LRI+
Sbjct:    1 MGVRALDLLNPCGTLPALAVTFDKELVDVLLAVSLVEPSLLR--GRE--GGPWRALEARRLARLMTGHRAREVLPRLLPDPERHSQGILYLVREQAVLRLVLPWIRRVEELGDEGGELGFSGSGALAEGRPPERARLQEVHRIGSGANAGG--RRSVGACMVYGASVGSLLLVRRRDAEVEMLNLAILPFMVDEEGDRPEEKDGDEQGRSVASARQELLSARGRETRE-RFFNFVPFEAACLPDLERLRRGYERFLHAVPGARTNELVRLKQDLIQEVVIPLRALQTRMVVRSDEVAVLYERAHAVAKVLDERLEEQRAACERLLERVAGAEHQLEQDEKVARLAVEKLHWVRSVITPQEDRRFQEVQLAEARLRNLHERLESVEGW----------LGGQKADGGDRTSICARRRRAPEQEMQ--RRHLISQVQDLGKDVALLESVLDMDEEDAPEEARVGGSALLHDFNSLRID 457
The following BLAST results are available for this feature:
BLAST of NO15G01230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22426.19.900e-12357.14hypothetical protein Naga_100011g44 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001483NSK001483Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01230.1NO15G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670453gene_4667Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g44gene7974Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01230.1NO15G01230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01230 ID=NO15G01230|Name=NO15G01230|organism=Nannochloropsis oceanica|type=gene|length=2625bp
AGCATGACAGAGGCCACGCGTACGGCAATTTCGCGATTGGCCAAGGCATC
ATCCTTGGAAGGGTTGCCGGCCAAGGCTGGGGAGCCTCTGAATGTGTGTG
CCTACAGCGATGCCAAGCAACGCCTCTACTTCTTTGGCCAAGACGTGCAT
CAACGGGTGGAGACGCTGCACTACCTGACCCTCTCGGACCTTGGGCAGGG
CGTTGGGGCGGTGCGTATTGGTGGGGCGGCAGGGGAAGATCCCCGGGACC
GCTTCTATGGTGGGACGCGCGTTACCAACCTGTCTTTCAATAGCATGGGT
GACCGCCTTTTGCTCAGCGGGCCGCCCAGCGAGTCTTTCCCGTACTTGGG
CGTGGTGGACCTGCGCAACGACGACGATTCCACACCACTATCTTCATCTT
CTTCCTTTAAAAAGGTGGCCGTCCATGCCCCGCATCGCCAGCTCTTGCCA
TTGGAAATTCGAGGCCGATTGCTCAAGGCCGACTGGCACCCGCTCAGCAA
AACGCTCGTAGTTGCCTTGATTGGGCCGGAGCACGGACCCGAGAGCGGCC
AGGCAGCAGAACTCCGATTCTACGACTTGTCGCAAGAAGACGGGGCACGC
ATGCCTGAGCTGGTCATTCCCGTGGACGGCGACGTCGCTTCATTTTGCTT
TGGGCCCGAGTCGTTGTGGCAGCGCTTCACTATTTATTTACTGAGTGCGG
GCATGGAGGGGTCAGGGGCATCCCCGCGCCTGTCGGCACTCTGCCCTGTG
GTACCATACCGGGCACAGGTTCCTGCAATGGCTGTAAAAGAGCTGCAGGA
GGCGGTCCTGGAAGAGCTGGCGTTGGACAAGGTCTCCAGACGGAGGGAGG
AATTGGAGTCGCAGTGGGCTTTCCTAGTGCGCTGCTTCGGAGACGTGGTG
GAGTTGGCAAAAGAGCGCGGTGAAGAGTTTCTGGCCTTTCGGTGGGTAAC
GAGCCGCTTGGCCACGGCCTCGGACCGCATGCCGGTGCTTCAGGAGGTGG
AATgtacgtatttcaactcagggacagagacagaccacagggctggggta
tttagacaatgaagcgaaatgaagatactcagtccctcctttcattcatt
tacccattcctcccctttcttttccctctttcagACCCCAACCCGCCCGT
CACGACCGCAGGAGGCGCCAGCATTTCCGCTCGGGCTCTGGACTTGCTGA
ACCCGCGCGGGACCTTGCCGGCGCTGGCCGTGACGTACGACAAGGAGCAG
GTGGATATCTTGTTGCTTGTCTCGCTCGTGGAGCCTTTGCTTGAGACCCC
CGGCGGTCATGAGCTGGCCTCGCACCGGTGGCGGGCACTGGAGACGCGGC
GACTGGCACGCCTCAAGGTGGGCCACCTCGCCAGCGAGGCGTTGCCGCGG
CTGATCCTGGACCCGGAGCGGCATGTGCACGGCACTCTGTACGTGGTGCG
GGAACAGGTGGTGCTTCGCCTTGTCCTACCGTGGATCAGGCGTATCGAGG
AGCTGGGCGAGGGCGGGGACGATGTGACTTCCTTTAGGAACGGGGGCCGA
CTGGGACGACGGCTGCCAGGGAAGACGCGCATGGTGGAGGTGCACCGGAT
TGGGACAGGGCGAGCAGGAGGAGGAGGTATTAAAGCAAGCGCGGGAATCT
GTATGGTGTACAACGCTTCAGTGGGAAGTTTACTTATCGTACGGCGACGC
GATGCGGAGGTAGAGATGTTGAACTTAGCCATCCTGCCCTTTATGGTAGA
CGAGGAGGAGGAAGGAGAGGAGGAAGAACAAGGGTGGGAACAGGAAGGGG
CTGCTGATCGGAGGAGCTCGACGCAGCAACAGGGCAGGAGCATGGCGAGC
AAGGACGGGCGTTTTTCCAACTTTGTATCCTTTGAGACGGCCTGTCTGCC
GGACATGGAGCGGCTGCGACGGGGCTACGACCGCTTCTTGCAGGCGGTAG
CGTGTCCAAGCGGAAGCGACCTGGCTCAGCTGAAGCAGGATCTGATCCAG
GAGGTGGTGATTCCCCTTCGGGCGCTGCAAACGCGCATGGTGGTTCGGGC
GGACGAGGTGGCAGTGCTGTTTGAGCGAGCGCACGCGGCGGCGAAGGCGC
TGGACAACCATCTGGTGGAGCTGCGGGCCGCATACGGGCGGCTGCAGACC
CGTGTCGCGGACGCTGAAAATCAATTGGAGAAAGATGAGCTAGTGGCTCA
GATGGCGGCCGAGCAGCTGCATTGGGTACGGACTGTCATCACGCCGCAGG
AGAACCGCAAGTTCCAGGAAGTACGGCTTGCTGAGGCCCGGCTGCGGAAC
TTGGACGAGCGCCTGGGGGCTGTCGAGGAGTGGGCTCGCGTCCAGGCCAA
AGAGGAGGAGGACGCTGGAGGTAGGGGGGTGGAGGGCGGGGGAAATAACA
GGCGCGCCATAGAACGGGAGTTCGAGGAGGCGCGTCGACGGTTGACGCGG
GAAGTGGAGGAGCTGATAAAAGACGTAGCACATATGGAAGGTGCCCTGAG
CCTAGACGAGGGGTATTTTTTGGGAGAGCAAGGTGGTGGAAGGGCGCCTT
TGCTGGGAGAGCTTGAGACTTTGCGCATCAATTGAACGTAAATCTAAATG
TGAACGAAACAGATGGCGAGATAGA
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protein sequence of NO15G01230.1

>NO15G01230.1-protein ID=NO15G01230.1-protein|Name=NO15G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=817bp
MTEATRTAISRLAKASSLEGLPAKAGEPLNVCAYSDAKQRLYFFGQDVHQ
RVETLHYLTLSDLGQGVGAVRIGGAAGEDPRDRFYGGTRVTNLSFNSMGD
RLLLSGPPSESFPYLGVVDLRNDDDSTPLSSSSSFKKVAVHAPHRQLLPL
EIRGRLLKADWHPLSKTLVVALIGPEHGPESGQAAELRFYDLSQEDGARM
PELVIPVDGDVASFCFGPESLWQRFTIYLLSAGMEGSGASPRLSALCPVV
PYRAQVPAMAVKELQEAVLEELALDKVSRRREELESQWAFLVRCFGDVVE
LAKERGEEFLAFRWVTSRLATASDRMPVLQEVEYPNPPVTTAGGASISAR
ALDLLNPRGTLPALAVTYDKEQVDILLLVSLVEPLLETPGGHELASHRWR
ALETRRLARLKVGHLASEALPRLILDPERHVHGTLYVVREQVVLRLVLPW
IRRIEELGEGGDDVTSFRNGGRLGRRLPGKTRMVEVHRIGTGRAGGGGIK
ASAGICMVYNASVGSLLIVRRRDAEVEMLNLAILPFMVDEEEEGEEEEQG
WEQEGAADRRSSTQQQGRSMASKDGRFSNFVSFETACLPDMERLRRGYDR
FLQAVACPSGSDLAQLKQDLIQEVVIPLRALQTRMVVRADEVAVLFERAH
AAAKALDNHLVELRAAYGRLQTRVADAENQLEKDELVAQMAAEQLHWVRT
VITPQENRKFQEVRLAEARLRNLDERLGAVEEWARVQAKEEEDAGGRGVE
GGGNNRRAIEREFEEARRRLTREVEELIKDVAHMEGALSLDEGYFLGEQG
GGRAPLLGELETLRIN*
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Synonyms
Publications