NO15G01090, NO15G01090 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G01090
Unique Name	NO15G01090
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	984
Alignment location	chr15:315949..316932 -

Link to JBrowse

Properties


Property Name	Value
Description	Protein RTF2 homolog

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:315949..316932 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:1902979	mitotic DNA replication termination
GO:1902979	mitotic DNA replication termination

Vocabulary: **INTERPRO**
Term	Definition
IPR006735	DUF602
IPR027799	Rtf2_RING-finger

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Homology

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: EWM22468.1 (Protein of unknown function DUF602 [Nannochloropsis gaditana])

HSP 1 Score: 368.6 bits (945), Expect = 2.000e-98
Identity = 242/329 (73.56%), Postives = 256/329 (77.81%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNKMGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAG--AGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEIGEASLQDEYGPFDVADDLIQLVPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEAGQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSAPMGLSTSSLATEAQRAAEKEMASSSAFASLFDNGNSNMDKNSMFSVRR 328
            MGNDGGVLAMQRK+MRGLGNKMGEKPSEE++KRFRALIRSRVCAVSSE LRDP+VACELGHLYNKEAVLLALLE TLNPAFAHIRGMKDLI CR TINPNWTDETAA A+A EA A+ EAKGE  NAG   G+F +E   SKYICPVARVEMNAKQPFVVIRSTGWVLSERALKE+G ASLQDEYGPFD +DDLI+LVPD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             E  Q                             V  APMGL  SSLA EAQRAAEKEMASSSAFASLF+NG+   DKN +FSVRR
Sbjct:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFD-SDDLIRLVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGRLGEGPKSHEETQ----KAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNNGDEKADKNRLFSVRR 324

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: CBJ28952.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 169.1 bits (427), Expect = 2.300e-38
Identity = 87/202 (43.07%), Postives = 123/202 (60.89%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNKMGEK---PSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEIGEASLQDEYGPFDVADDLIQLVPDE 200
            MG DGGV+A +R+YM+  G+  G K       +N+   A +R++VCA+S+E LR+P+ ACELG+LYNK+ ++  LL R LNPAF HIRG+KD++ C+LT NP++  E  A                          D    ++++CPV   EMN    FVV+ STGWV+SE+A KE+G A LQ+EYGPF   DD++ L P +
Sbjct:    1 MGGDGGVIAAKREYMQSCGDVFGMKGGMAKTALNRTETAELRTKVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRA-------------------------FDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPF-TEDDIVGLAPTD 176

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: ETK89767.1 (hypothetical protein L915_06328 [Phytophthora parasitica])

HSP 1 Score: 118.2 bits (295), Expect = 4.700e-23
Identity = 74/175 (42.29%), Postives = 99/175 (56.57%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNK-MGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEI 175
            MGNDGGV+A++RK+MR    K  GEK  +E  +    L ++R CA+SSE LR+PIVAC LG+L+NK+A+L  LL +++   F HI  +KD++ CR+T                     RE K E               + + CPV  VE N KQPFVV+ S G VLSERALK +
Sbjct:    1 MGNDGGVIAVKRKFMRHANVKARGEKADQEALR----LEKARTCALSSEPLREPIVACRLGNLFNKQALLERLLAKSMPERFRHITSLKDVVACRVT---------------------REKKEEG--------------ALWSCPVTMVEFNGKQPFVVLFSCGCVLSERALKAV 136

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: ETL43157.1 (hypothetical protein L916_06265 [Phytophthora parasitica] >ETP19645.1 hypothetical protein F441_06451 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 118.2 bits (295), Expect = 4.700e-23
Identity = 74/175 (42.29%), Postives = 99/175 (56.57%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNK-MGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEI 175
            MGNDGGV+A++RK+MR    K  GEK  +E  +    L ++R CA+SSE LR+PIVAC LG+L+NK+A+L  LL +++   F HI  +KD++ CR+T                     RE K E               + + CPV  VE N KQPFVV+ S G VLSERALK +
Sbjct:    1 MGNDGGVIAVKRKFMRHANVKARGEKADQEALR----LEKARTCALSSEPLREPIVACRLGNLFNKQALLERLLAKSMPERFRHITSLKDVVACRVT---------------------REKKEEG--------------ALWSCPVTMVEFNGKQPFVVLFSCGCVLSERALKAV 136

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: OWZ23349.1 (hypothetical protein PHMEG_0001794 [Phytophthora megakarya])

HSP 1 Score: 118.2 bits (295), Expect = 4.700e-23
Identity = 77/200 (38.50%), Postives = 107/200 (53.50%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNK-MGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEIGEASLQDEYGPFDVADDLIQLVPDE 200
            MGNDGGV+A++RK+MR    K  GEK  +E  +    L ++R CA+SSE LRDP+VAC LG+L+NK+ VL  LL +++   + HI  +KD++ CR+T                     RE               E+  + + CPV  VE N KQPFVV+   G VLSERALK +          PF+   D++ LV +E
Sbjct:    1 MGNDGGVIAVKRKFMRHANVKARGEKADQEALR----LEKARTCALSSEPLRDPVVACRLGNLFNKQTVLEHLLAKSMPERYRHITSLKDVVTCRVT---------------------RE--------------KEQDNAVWSCPVTMVEFNGKQPFVVLFKCGCVLSERALKAVNTKECLVCGKPFE-EQDVVTLVDEE 160

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: XP_002999030.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69176.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 115.9 bits (289), Expect = 2.300e-22
Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNKMGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEI 175
            MGNDGGV+A++RK+MR    K   + +++   R   L ++R CAVSS+ LR+P+VAC LG+L+NK+AVL  LL +++   F HI  +KD++ CR+T                     RE              +EE  + + CPV   E N KQPFVV+ S G VLSERALK +
Sbjct:    1 MGNDGGVIAVKRKFMRHANVKARNEKADQEALR---LEKARTCAVSSDPLREPVVACRLGNLFNKQAVLEHLLAKSMPERFRHITSLKDVVTCRVT---------------------REK-------------EEEEDALWSCPVTMTEFNGKQPFVVLFSCGCVLSERALKAV 137

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: POM75157.1 (hypothetical protein PHPALM_7777 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 115.9 bits (289), Expect = 2.300e-22
Identity = 78/200 (39.00%), Postives = 107/200 (53.50%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNK-MGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEIGEASLQDEYGPFDVADDLIQLVPDE 200
            MGNDGGV+A++RK+MR    K  GEK  +E  +    L ++R C +SSE LRDP+VAC LG+L+NK+ VL  LL +++   + HI  +KD++ CR+T                     RE + E       AF        + CPV  VE N KQPFVV+   G VLSERALK +          PF+   D++ L+ DE
Sbjct:    1 MGNDGGVIAVKRKFMRHANVKARGEKADQEALR----LEKARTCVLSSEPLRDPVVACRLGNLFNKQTVLEHLLAKSMPERYRHITSLKDVVTCRVT---------------------REKEQED------AF--------WCCPVTMVEFNGKQPFVVLFKCGCVLSERALKAVQTKECLVCGKPFE-EQDVVTLLDDE 160

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: POM57625.1 (hypothetical protein PHPALM_37835 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 115.5 bits (288), Expect = 3.000e-22
Identity = 73/175 (41.71%), Postives = 98/175 (56.00%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNK-MGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEI 175
            MGNDGGV+A++RK+MR    K  GEK  +E  +    L ++R C +SSE LRDP+VAC LG+L+NK+ VL  LL +++   + HI  +KD++ CR+T                     RE + E      GAF        + CPV  VE N KQPFVV+   G VLSERALK +
Sbjct:    1 MGNDGGVIAVKRKFMRHANVKARGEKADQEALR----LEKARTCVLSSEPLRDPVVACRLGNLFNKQTVLEHLLAKSMPERYRHITSLKDVVTCRVT---------------------REKQQE------GAF--------WCCPVTMVEFNGKQPFVVLFKCGCVLSERALKAV 136

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: ETI49879.1 (hypothetical protein F443_06444 [Phytophthora parasitica P1569] >ETO78599.1 hypothetical protein F444_06506 [Phytophthora parasitica P1976] >ETP47583.1 hypothetical protein F442_06489 [Phytophthora parasitica P10297])

HSP 1 Score: 115.2 bits (287), Expect = 3.900e-22
Identity = 73/175 (41.71%), Postives = 98/175 (56.00%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNK-MGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEI 175
            MGNDGGV+A++RK+MR    K  GEK  +E  +    L ++R CA+SSE LR+PIVAC LG+L+NK+A+L  LL +++   F HI  +KD++ CR+T                     RE K E               + + CPV  VE N KQ FVV+ S G VLSERALK +
Sbjct:    1 MGNDGGVIAVKRKFMRHANVKARGEKADQEALR----LEKARTCALSSEPLREPIVACRLGNLFNKQALLERLLAKSMPERFRHITSLKDVVACRVT---------------------REKKEEG--------------ALWSCPVTMVEFNGKQAFVVLFSCGCVLSERALKAV 136

[Close]

BLAST of NO15G01090 vs. NCBI_GenBank
Match: ETL96340.1 (hypothetical protein L917_06135 [Phytophthora parasitica])

HSP 1 Score: 115.2 bits (287), Expect = 3.900e-22
Identity = 73/175 (41.71%), Postives = 98/175 (56.00%), Query Frame = 0

Query:    1 MGNDGGVLAMQRKYMRGLGNK-MGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEI 175
            MGNDGGV+A++RK+MR    K  GEK  +E  +    L ++R CA+SSE LR+PIVAC LG+L+NK+A+L  LL +++   F HI  +KD++ CR+T                     RE K E               + + CPV  VE N KQ FVV+ S G VLSERALK +
Sbjct:    1 MGNDGGVIAVKRKFMRHANVKARGEKADQEALR----LEKARTCALSSEPLREPIVACRLGNLFNKQALLERLLAKSMPERFRHITSLKDVVACRVT---------------------REKKEEG--------------ALWSCPVTMVEFNGKQAFVVLFSCGCVLSERALKAV 136

The following BLAST results are available for this feature:

BLAST of NO15G01090 vs. NCBI_GenBank

BLAST of NO15G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM22468.1	2.000e-98	73.56	Protein of unknown function DUF602 [Nannochloropsi...	[more]
CBJ28952.1	2.300e-38	43.07	conserved unknown protein [Ectocarpus siliculosus]	[more]
ETK89767.1	4.700e-23	42.29	hypothetical protein L915_06328 [Phytophthora para...	[more]
ETL43157.1	4.700e-23	42.29	hypothetical protein L916_06265 [Phytophthora para...	[more]
OWZ23349.1	4.700e-23	38.50	hypothetical protein PHMEG_0001794 [Phytophthora m...	[more]
XP_002999030.1	2.300e-22	40.23	conserved hypothetical protein [Phytophthora infes...	[more]
POM75157.1	2.300e-22	39.00	hypothetical protein PHPALM_7777 [Phytophthora pal...	[more]
POM57625.1	3.000e-22	41.71	hypothetical protein PHPALM_37835 [Phytophthora pa...	[more]
ETI49879.1	3.900e-22	41.71	hypothetical protein F443_06444 [Phytophthora para...	[more]
ETL96340.1	3.900e-22	41.71	hypothetical protein L917_06135 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL145	nonsL145	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR006	ncniR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR063	ngnoR063	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001497	NSK001497	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO15G01090.1	NO15G01090.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587361	gene_4651	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100011g30	gene7960	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO15G01090.1	NO15G01090.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO15G01090 ID=NO15G01090|Name=NO15G01090|organism=Nannochloropsis oceanica|type=gene|length=984bp
ATGGGGAACGATGGGGGCGTATTGGCCATGCAGCGCAAGTACATGCGCGG
CCTTGGCAACAAGATGGGAGAGAAACCGAGCGAGGAAATGAACAAGCGTT
TCCGGGCCCTCATTCGCAGCCGGGTCTGTGCGGTGTCGAGTGAGGCGCTG
CGGGATCCCATCGTGGCGTGCGAGCTGGGACACCTGTACAATAAGGAGGC
GGTGCTACTGGCACTTTTGGAACGGACACTTAATCCCGCATTTGCCCACA
TCCGGGGGATGAAGGACCTGATTCCATGCCGCCTTACTATCAACCCCAAC
TGGACAGACGAGACGGCAGCGGTGGCCGCGGCCAACGAAGCAAGTGCCTC
CAGGGAAGCCAAGGGGGAGAGCAAAAATGCCGGCGCTGGAGCCTTTGTGG
ACGAAGAATTGACGTCCAAGTATATCTGCCCCGTGGCGCGCGTGGAGATG
AACGCCAAGCAGCCCTTTGTGGTGATCCGGTCCACTGGGTGGGTGCTGAG
TGAGCGGGCCTTAAAAGAGATCGGGGAAGCGAGCTTGCAGGACGAGTACG
GCCCGTTTGATGTTGCTGACGACTTGATACAACTGGTGCCTGACGAGGAG
GAGGAAAATAGATTGCGTCGGCGCATGAACGACCGAAGGAGTAAGGCGAA
GAAGGAGAGGAAGCGGAAGCAACGGGAAAATCAAAATGACGAGGGTGGGA
AGGGAGAGGGGGAGCAAAAACTGGACGAGGCTGGGCAGCTGAAAAAGAAA
AAGAAGGCACACAAGGTGGCCAAGCTGCTGCTCACCAACGGAGGCGGAAA
GGAAGAAGCTGGGTCCTCGTCTCACGTGTCGAGTGCCCCTATGGGACTTT
CGACCTCGTCCTTGGCCACTGAGGCGCAACGAGCAGCAGAGAAAGAGATG
GCCTCGTCGTCGGCATTTGCCTCGCTCTTCGACAACGGGAACAGCAATAT
GGACAAGAACAGCATGTTTAGCGTTCGACGCTGA

protein sequence of NO15G01090.1

>NO15G01090.1-protein ID=NO15G01090.1-protein|Name=NO15G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MGNDGGVLAMQRKYMRGLGNKMGEKPSEEMNKRFRALIRSRVCAVSSEAL
RDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPN
WTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEM
NAKQPFVVIRSTGWVLSERALKEIGEASLQDEYGPFDVADDLIQLVPDEE
EENRLRRRMNDRRSKAKKERKRKQRENQNDEGGKGEGEQKLDEAGQLKKK
KKAHKVAKLLLTNGGGKEEAGSSSHVSSAPMGLSTSSLATEAQRAAEKEM
ASSSAFASLFDNGNSNMDKNSMFSVRR*

Synonyms

Publications