NO15G01090.1, NO15G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01090.1
Unique NameNO15G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length984
Alignment locationchr15:315949..316932 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:315949..316932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01090.1 vs.
Match: EWM22468.1 (Protein of unknown function DUF602 [Nannochloropsis gaditana])

HSP 1 Score: 440.7 bits (1132), Expect = 4.100e-120
Identity = 250/330 (75.76%), Postives = 275/330 (83.33%), Query Frame = 0 
Query:    1 MGNDGGVLAMQRKYMRGLGNKMGEKPSEEMNKRFRALIRSRVCAVSSEALRDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPNWTDETAAVAAANEASASREAKGESKNAG--AGAFVDEELTSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEIGEASLQDEYGPFDVADDLIQLVPDEEEENRLRRRMNDRRSKAKKERKRKQRENQNDEGGK-GEGEQKLDEAGQLKKKKKAHKVAKLLLTNGGGKEEAGSSSHVSSAPMGLSTSSLATEAQRAAEKEMASSSAFASLFDNGNSNMDKNSMFSVRR 328
            MGNDGGVLAMQRK+MRGLGNKMGEKPSEE++KRFRALIRSRVCAVSSE LRDP+VACELGHLYNKEAVLLALLE TLNPAFAHIRGMKDLI CR TINPNWTDETAA A+A EA A+ EAKGE  NAG   G+F +E   SKYICPVARVEMNAKQPFVVIRSTGWVLSERALKE+G ASLQDEYGPFD +DDLI+LVPDEEEE  LRRRMN+RRSK+KKE+KRKQR   + EGG+ GEG +  +E      +K   K AKL + NGG +E   +SS V  APMGL  SSLA EAQRAAEKEMASSSAFASLF+NG+   DKN +FSVRR
Sbjct:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFD-SDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEET-----QKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNNGDEKADKNRLFSVRR 324
The following BLAST results are available for this feature:
BLAST of NO15G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22468.14.100e-12075.76Protein of unknown function DUF602 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01090NO15G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01090.1NO15G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01090.1.cds1NO15G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01090.1 ID=NO15G01090.1|Name=NO15G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp
ATGGGGAACGATGGGGGCGTATTGGCCATGCAGCGCAAGTACATGCGCGG
CCTTGGCAACAAGATGGGAGAGAAACCGAGCGAGGAAATGAACAAGCGTT
TCCGGGCCCTCATTCGCAGCCGGGTCTGTGCGGTGTCGAGTGAGGCGCTG
CGGGATCCCATCGTGGCGTGCGAGCTGGGACACCTGTACAATAAGGAGGC
GGTGCTACTGGCACTTTTGGAACGGACACTTAATCCCGCATTTGCCCACA
TCCGGGGGATGAAGGACCTGATTCCATGCCGCCTTACTATCAACCCCAAC
TGGACAGACGAGACGGCAGCGGTGGCCGCGGCCAACGAAGCAAGTGCCTC
CAGGGAAGCCAAGGGGGAGAGCAAAAATGCCGGCGCTGGAGCCTTTGTGG
ACGAAGAATTGACGTCCAAGTATATCTGCCCCGTGGCGCGCGTGGAGATG
AACGCCAAGCAGCCCTTTGTGGTGATCCGGTCCACTGGGTGGGTGCTGAG
TGAGCGGGCCTTAAAAGAGATCGGGGAAGCGAGCTTGCAGGACGAGTACG
GCCCGTTTGATGTTGCTGACGACTTGATACAACTGGTGCCTGACGAGGAG
GAGGAAAATAGATTGCGTCGGCGCATGAACGACCGAAGGAGTAAGGCGAA
GAAGGAGAGGAAGCGGAAGCAACGGGAAAATCAAAATGACGAGGGTGGGA
AGGGAGAGGGGGAGCAAAAACTGGACGAGGCTGGGCAGCTGAAAAAGAAA
AAGAAGGCACACAAGGTGGCCAAGCTGCTGCTCACCAACGGAGGCGGAAA
GGAAGAAGCTGGGTCCTCGTCTCACGTGTCGAGTGCCCCTATGGGACTTT
CGACCTCGTCCTTGGCCACTGAGGCGCAACGAGCAGCAGAGAAAGAGATG
GCCTCGTCGTCGGCATTTGCCTCGCTCTTCGACAACGGGAACAGCAATAT
GGACAAGAACAGCATGTTTAGCGTTCGACGCTGA
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protein sequence of NO15G01090.1

>NO15G01090.1-protein ID=NO15G01090.1-protein|Name=NO15G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MGNDGGVLAMQRKYMRGLGNKMGEKPSEEMNKRFRALIRSRVCAVSSEAL
RDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPN
WTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEM
NAKQPFVVIRSTGWVLSERALKEIGEASLQDEYGPFDVADDLIQLVPDEE
EENRLRRRMNDRRSKAKKERKRKQRENQNDEGGKGEGEQKLDEAGQLKKK
KKAHKVAKLLLTNGGGKEEAGSSSHVSSAPMGLSTSSLATEAQRAAEKEM
ASSSAFASLFDNGNSNMDKNSMFSVRR*
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mRNA from alignment at chr15:315949..316932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01090.1 ID=NO15G01090.1|Name=NO15G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp|location=Sequence derived from alignment at chr15:315949..316932- (Nannochloropsis oceanica)
ATGGGGAACGATGGGGGCGTATTGGCCATGCAGCGCAAGTACATGCGCGG
CCTTGGCAACAAGATGGGAGAGAAACCGAGCGAGGAAATGAACAAGCGTT
TCCGGGCCCTCATTCGCAGCCGGGTCTGTGCGGTGTCGAGTGAGGCGCTG
CGGGATCCCATCGTGGCGTGCGAGCTGGGACACCTGTACAATAAGGAGGC
GGTGCTACTGGCACTTTTGGAACGGACACTTAATCCCGCATTTGCCCACA
TCCGGGGGATGAAGGACCTGATTCCATGCCGCCTTACTATCAACCCCAAC
TGGACAGACGAGACGGCAGCGGTGGCCGCGGCCAACGAAGCAAGTGCCTC
CAGGGAAGCCAAGGGGGAGAGCAAAAATGCCGGCGCTGGAGCCTTTGTGG
ACGAAGAATTGACGTCCAAGTATATCTGCCCCGTGGCGCGCGTGGAGATG
AACGCCAAGCAGCCCTTTGTGGTGATCCGGTCCACTGGGTGGGTGCTGAG
TGAGCGGGCCTTAAAAGAGATCGGGGAAGCGAGCTTGCAGGACGAGTACG
GCCCGTTTGATGTTGCTGACGACTTGATACAACTGGTGCCTGACGAGGAG
GAGGAAAATAGATTGCGTCGGCGCATGAACGACCGAAGGAGTAAGGCGAA
GAAGGAGAGGAAGCGGAAGCAACGGGAAAATCAAAATGACGAGGGTGGGA
AGGGAGAGGGGGAGCAAAAACTGGACGAGGCTGGGCAGCTGAAAAAGAAA
AAGAAGGCACACAAGGTGGCCAAGCTGCTGCTCACCAACGGAGGCGGAAA
GGAAGAAGCTGGGTCCTCGTCTCACGTGTCGAGTGCCCCTATGGGACTTT
CGACCTCGTCCTTGGCCACTGAGGCGCAACGAGCAGCAGAGAAAGAGATG
GCCTCGTCGTCGGCATTTGCCTCGCTCTTCGACAACGGGAACAGCAATAT
GGACAAGAACAGCATGTTTAGCGTTCGACGCTGA
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Coding sequence (CDS) from alignment at chr15:315949..316932-

>NO15G01090.1 ID=NO15G01090.1|Name=NO15G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr15:315949..316932- (Nannochloropsis oceanica)
ATGGGGAACGATGGGGGCGTATTGGCCATGCAGCGCAAGTACATGCGCGG
CCTTGGCAACAAGATGGGAGAGAAACCGAGCGAGGAAATGAACAAGCGTT
TCCGGGCCCTCATTCGCAGCCGGGTCTGTGCGGTGTCGAGTGAGGCGCTG
CGGGATCCCATCGTGGCGTGCGAGCTGGGACACCTGTACAATAAGGAGGC
GGTGCTACTGGCACTTTTGGAACGGACACTTAATCCCGCATTTGCCCACA
TCCGGGGGATGAAGGACCTGATTCCATGCCGCCTTACTATCAACCCCAAC
TGGACAGACGAGACGGCAGCGGTGGCCGCGGCCAACGAAGCAAGTGCCTC
CAGGGAAGCCAAGGGGGAGAGCAAAAATGCCGGCGCTGGAGCCTTTGTGG
ACGAAGAATTGACGTCCAAGTATATCTGCCCCGTGGCGCGCGTGGAGATG
AACGCCAAGCAGCCCTTTGTGGTGATCCGGTCCACTGGGTGGGTGCTGAG
TGAGCGGGCCTTAAAAGAGATCGGGGAAGCGAGCTTGCAGGACGAGTACG
GCCCGTTTGATGTTGCTGACGACTTGATACAACTGGTGCCTGACGAGGAG
GAGGAAAATAGATTGCGTCGGCGCATGAACGACCGAAGGAGTAAGGCGAA
GAAGGAGAGGAAGCGGAAGCAACGGGAAAATCAAAATGACGAGGGTGGGA
AGGGAGAGGGGGAGCAAAAACTGGACGAGGCTGGGCAGCTGAAAAAGAAA
AAGAAGGCACACAAGGTGGCCAAGCTGCTGCTCACCAACGGAGGCGGAAA
GGAAGAAGCTGGGTCCTCGTCTCACGTGTCGAGTGCCCCTATGGGACTTT
CGACCTCGTCCTTGGCCACTGAGGCGCAACGAGCAGCAGAGAAAGAGATG
GCCTCGTCGTCGGCATTTGCCTCGCTCTTCGACAACGGGAACAGCAATAT
GGACAAGAACAGCATGTTTAGCGTTCGACGCTGA
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Synonyms
Publications