NO15G00880, NO15G00880 (gene) Nannochloropsis oceanica

Overview
NameNO15G00880
Unique NameNO15G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2381
Alignment locationchr15:270187..272567 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:270187..272567 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
Homology
The following BLAST results are available for this feature:
BLAST of NO15G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001520NSK001520Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00880.1NO15G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587283gene_4633Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00880.1NO15G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00880 ID=NO15G00880|Name=NO15G00880|organism=Nannochloropsis oceanica|type=gene|length=2381bp
ATGGATATGGTTGAGCACAAGCGCGATGCCGCGGCAACTGTTGAGCCGGC
GGGGGGGTTTGTTGCCAACGGAATTGGGCAAGGCTTGAAGATCGATGGAC
AGCCCATGAAGGTGGAGGAGGAGAGGGAGGACACAGGCGCCGACGCCGAT
ACAGATGATAGTGACCACGACAACAATAGTGAAAGTGAGAGAGACGACAA
GGAAGAGAGCGGCAGTAGCAGCAGCGGCAACAGTAGCAGTGATGACGACG
AGCAAGACGAGGACGACGAGGAAGGGGTGGTTGATGACTTGGCCATGGCG
GCATTGGCCGCGGGGCTGGATGAAATGAGTGCCCCCACAGGGGCGTTAAT
GAATGCCCTTCAGCCTTCCCTACGGCAGAGCGTGGATGAGATTGTGGACG
ATAGGACAGGGCCTTTGCTGCAAATTTTAAAGGAGGTGGAGGAACGCTGC
GGTGATGATGGTGAGGGTGCCATCATTGCTGGTAAGGTTGAGGGAGTGGA
GGGGGAAGAAGCAGCGGTAGAGCAGGAAGAGGAGGAGAATGATGATGACG
ATAATGATGACGAGTCTATTCCTGGCCTCGGACTGGATTTGCCTTCGGAC
GATGATGACGAAGATGGGGGGGGAAGACGTAAGAAGAAAGGAGTAGGGTT
GCGAGGTCCCAAGACTCAAAATGAGGTGGTGGAGGTGATCCAACCCAAGG
AAAAGGAGGTAGAGGAAGAAGCAGAAGTCGCTGCACTAGGGTTGACCGAA
TCAGATGATATTGTCCCGTGTGGGACGGTACTGGCCGCACTTGAAGACGA
GAGGATAATCGTCGTACAGGCGCCTAGTCTGGCGAAGCAGGACGGGGGGA
TGAATAGGCCTTTGGACGAGGGGAGTTGGTTGTGTTTAATGGAGGGGAGA
ATAGTTTTGGGGAAGGTGAAGGAGGTTTTTGGGCCTGTGACACAGCCTTG
TTATCGTTTGCATTACAGAGCGGGATTATTGCCTGCAGCTGCTGTTGAAC
GAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGGAGCAGCAGAGGAGGGA
GGTAATGGCAGCAGCAGCAGCAACAGAACAACGACGACAGCAGCAGATGC
TGTGAATATTGCAATAAAGCCTGGTTTAGAGGTTGGATATGTGGCTCGAC
TGACAGACTTCATCGTGCCTCAGTCCCTGGCAAGCAAAGGGACGGATGCC
TCCAATGTCCACGACGAGGAGGTCGGGGTGGAGGAGCAGGAGTACTCTGA
CGACGAAGCTGAAGCTGCAGCCAAGGCAGCAAGGAAGAAGAATAAGAAAG
TCTCGGGAGCAAAGGAGGATGGGGGACTACTGAGTGTTGATCCACCAGgt
gcggctgagacggcgataggagtaggtggggtaggaggacgaggagtgaa
aagaggcgggagggggggaaagagggaggtaggacggggaagaggatgtt
ttggagagaggggagggaggtttggcggtcgggtgggggggtagggaggg
aggggagaggaggacaaggaggaagtgactatcagcctttccagcagcag
ctccccaccttcagtgctggagggagggttgggatcatcggttttggagg
gagaggagaagagggggaaggtggaggtggaggtggaggtggaggaagag
gaataagatggacttacttccctcatcaaccacaaccagGCTTCTACCCC
ACTCCCCCTTCTCCTCCTTCCCTTCCTCTTTCCGTCCCTCATCGACACAC
AACTCCGGCATATTCCGCTGGTGCTCTTCCAGGCCAGCCTCCCCTTCCTC
CCGGGCCTCCTCCCCTTCACCAAACCTCACAACAATTCTACCTGCCCGCA
CCACAGCCGCATCAGCAGTATTTTCACCACCACCTCCAGCAGCAGCAGCA
GCCACCACCGCCTTCTTCTATCGCTGCTCGTCCTCCTCATCATGGCCATA
TGCCTGTAGCTCTTTCTTATACGGACAGTGTGCCGGGTCATCACATGCAG
CAACCGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCTA
TTCCCCTTCACGTCTTCAGCAACACGAGCAACGTTATCCCATGCAGCACC
AGCAGCAGCTGCAGTTTCTCCAACCGTCCTGGCCACACCCGTCGCCGCCG
CAACAGCAGTATCATCACCAACAGCAACGATCTCATCAGCCGGTGGCACC
ACAACAGCAGCACCAGCAGCAATACTGTCCTCAGCACCACCAGCCTCAGC
TGCAACAGCAGCACGTGCAGCAACAGCACCTACAGCAAGGGTCGTGGCAT
CACCAGCAGCAGCAGCAGCAGTTTCAAGCTCCTGGCGGCCAGCCGCAGCC
GCCGCCACCACCGGGATGGAGGCATGGGTAA
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protein sequence of NO15G00880.1

>NO15G00880.1-protein ID=NO15G00880.1-protein|Name=NO15G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MDMVEHKRDAAATVEPAGGFVANGIGQGLKIDGQPMKVEEEREDTGADAD
TDDSDHDNNSESERDDKEESGSSSSGNSSSDDDEQDEDDEEGVVDDLAMA
ALAAGLDEMSAPTGALMNALQPSLRQSVDEIVDDRTGPLLQILKEVEERC
GDDGEGAIIAGKVEGVEGEEAAVEQEEEENDDDDNDDESIPGLGLDLPSD
DDDEDGGGRRKKKGVGLRGPKTQNEVVEVIQPKEKEVEEEAEVAALGLTE
SDDIVPCGTVLAALEDERIIVVQAPSLAKQDGGMNRPLDEGSWLCLMEGR
IVLGKVKEVFGPVTQPCYRLHYRAGLLPAAAVERGGGGGAAAAGGAAEEG
GNGSSSSNRTTTTAADAVNIAIKPGLEVGYVARLTDFIVPQSLASKGTDA
SNVHDEEVGVEEQEYSDDEAEAAAKAARKKNKKVSGAKEDGGLLSVDPPG
FYPTPPSPPSLPLSVPHRHTTPAYSAGALPGQPPLPPGPPPLHQTSQQFY
LPAPQPHQQYFHHHLQQQQQPPPPSSIAARPPHHGHMPVALSYTDSVPGH
HMQQPQRQQQQQQQQQQQLYSPSRLQQHEQRYPMQHQQQLQFLQPSWPHP
SPPQQQYHHQQQRSHQPVAPQQQHQQQYCPQHHQPQLQQQHVQQQHLQQG
SWHHQQQQQQFQAPGGQPQPPPPPGWRHG*
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Synonyms
Publications