NO15G00880.1, NO15G00880.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G00880.1
Unique Name	NO15G00880.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2040
Alignment location	chr15:270187..272567 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:270187..272567 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO15G00880.1 vs.

BLAST of NO15G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G00880	NO15G00880	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G00880.1	NO15G00880.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G00880.1.cds1	NO15G00880.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00880.1.cds2	NO15G00880.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:270187..272567+
coding sequence from alignment at chr15:270187..272567+

mRNA sequence

>NO15G00880.1 ID=NO15G00880.1|Name=NO15G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp
ATGGATATGGTTGAGCACAAGCGCGATGCCGCGGCAACTGTTGAGCCGGC
GGGGGGGTTTGTTGCCAACGGAATTGGGCAAGGCTTGAAGATCGATGGAC
AGCCCATGAAGGTGGAGGAGGAGAGGGAGGACACAGGCGCCGACGCCGAT
ACAGATGATAGTGACCACGACAACAATAGTGAAAGTGAGAGAGACGACAA
GGAAGAGAGCGGCAGTAGCAGCAGCGGCAACAGTAGCAGTGATGACGACG
AGCAAGACGAGGACGACGAGGAAGGGGTGGTTGATGACTTGGCCATGGCG
GCATTGGCCGCGGGGCTGGATGAAATGAGTGCCCCCACAGGGGCGTTAAT
GAATGCCCTTCAGCCTTCCCTACGGCAGAGCGTGGATGAGATTGTGGACG
ATAGGACAGGGCCTTTGCTGCAAATTTTAAAGGAGGTGGAGGAACGCTGC
GGTGATGATGGTGAGGGTGCCATCATTGCTGGTAAGGTTGAGGGAGTGGA
GGGGGAAGAAGCAGCGGTAGAGCAGGAAGAGGAGGAGAATGATGATGACG
ATAATGATGACGAGTCTATTCCTGGCCTCGGACTGGATTTGCCTTCGGAC
GATGATGACGAAGATGGGGGGGGAAGACGTAAGAAGAAAGGAGTAGGGTT
GCGAGGTCCCAAGACTCAAAATGAGGTGGTGGAGGTGATCCAACCCAAGG
AAAAGGAGGTAGAGGAAGAAGCAGAAGTCGCTGCACTAGGGTTGACCGAA
TCAGATGATATTGTCCCGTGTGGGACGGTACTGGCCGCACTTGAAGACGA
GAGGATAATCGTCGTACAGGCGCCTAGTCTGGCGAAGCAGGACGGGGGGA
TGAATAGGCCTTTGGACGAGGGGAGTTGGTTGTGTTTAATGGAGGGGAGA
ATAGTTTTGGGGAAGGTGAAGGAGGTTTTTGGGCCTGTGACACAGCCTTG
TTATCGTTTGCATTACAGAGCGGGATTATTGCCTGCAGCTGCTGTTGAAC
GAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGGAGCAGCAGAGGAGGGA
GGTAATGGCAGCAGCAGCAGCAACAGAACAACGACGACAGCAGCAGATGC
TGTGAATATTGCAATAAAGCCTGGTTTAGAGGTTGGATATGTGGCTCGAC
TGACAGACTTCATCGTGCCTCAGTCCCTGGCAAGCAAAGGGACGGATGCC
TCCAATGTCCACGACGAGGAGGTCGGGGTGGAGGAGCAGGAGTACTCTGA
CGACGAAGCTGAAGCTGCAGCCAAGGCAGCAAGGAAGAAGAATAAGAAAG
TCTCGGGAGCAAAGGAGGATGGGGGACTACTGAGTGTTGATCCACCAGGC
TTCTACCCCACTCCCCCTTCTCCTCCTTCCCTTCCTCTTTCCGTCCCTCA
TCGACACACAACTCCGGCATATTCCGCTGGTGCTCTTCCAGGCCAGCCTC
CCCTTCCTCCCGGGCCTCCTCCCCTTCACCAAACCTCACAACAATTCTAC
CTGCCCGCACCACAGCCGCATCAGCAGTATTTTCACCACCACCTCCAGCA
GCAGCAGCAGCCACCACCGCCTTCTTCTATCGCTGCTCGTCCTCCTCATC
ATGGCCATATGCCTGTAGCTCTTTCTTATACGGACAGTGTGCCGGGTCAT
CACATGCAGCAACCGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCTCTATTCCCCTTCACGTCTTCAGCAACACGAGCAACGTTATCCCA
TGCAGCACCAGCAGCAGCTGCAGTTTCTCCAACCGTCCTGGCCACACCCG
TCGCCGCCGCAACAGCAGTATCATCACCAACAGCAACGATCTCATCAGCC
GGTGGCACCACAACAGCAGCACCAGCAGCAATACTGTCCTCAGCACCACC
AGCCTCAGCTGCAACAGCAGCACGTGCAGCAACAGCACCTACAGCAAGGG
TCGTGGCATCACCAGCAGCAGCAGCAGCAGTTTCAAGCTCCTGGCGGCCA
GCCGCAGCCGCCGCCACCACCGGGATGGAGGCATGGGTAA

protein sequence of NO15G00880.1

>NO15G00880.1-protein ID=NO15G00880.1-protein|Name=NO15G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MDMVEHKRDAAATVEPAGGFVANGIGQGLKIDGQPMKVEEEREDTGADAD
TDDSDHDNNSESERDDKEESGSSSSGNSSSDDDEQDEDDEEGVVDDLAMA
ALAAGLDEMSAPTGALMNALQPSLRQSVDEIVDDRTGPLLQILKEVEERC
GDDGEGAIIAGKVEGVEGEEAAVEQEEEENDDDDNDDESIPGLGLDLPSD
DDDEDGGGRRKKKGVGLRGPKTQNEVVEVIQPKEKEVEEEAEVAALGLTE
SDDIVPCGTVLAALEDERIIVVQAPSLAKQDGGMNRPLDEGSWLCLMEGR
IVLGKVKEVFGPVTQPCYRLHYRAGLLPAAAVERGGGGGAAAAGGAAEEG
GNGSSSSNRTTTTAADAVNIAIKPGLEVGYVARLTDFIVPQSLASKGTDA
SNVHDEEVGVEEQEYSDDEAEAAAKAARKKNKKVSGAKEDGGLLSVDPPG
FYPTPPSPPSLPLSVPHRHTTPAYSAGALPGQPPLPPGPPPLHQTSQQFY
LPAPQPHQQYFHHHLQQQQQPPPPSSIAARPPHHGHMPVALSYTDSVPGH
HMQQPQRQQQQQQQQQQQLYSPSRLQQHEQRYPMQHQQQLQFLQPSWPHP
SPPQQQYHHQQQRSHQPVAPQQQHQQQYCPQHHQPQLQQQHVQQQHLQQG
SWHHQQQQQQFQAPGGQPQPPPPPGWRHG*

mRNA from alignment at chr15:270187..272567+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G00880.1 ID=NO15G00880.1|Name=NO15G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at chr15:270187..272567+ (Nannochloropsis oceanica)
ATGGATATGGTTGAGCACAAGCGCGATGCCGCGGCAACTGTTGAGCCGGC
GGGGGGGTTTGTTGCCAACGGAATTGGGCAAGGCTTGAAGATCGATGGAC
AGCCCATGAAGGTGGAGGAGGAGAGGGAGGACACAGGCGCCGACGCCGAT
ACAGATGATAGTGACCACGACAACAATAGTGAAAGTGAGAGAGACGACAA
GGAAGAGAGCGGCAGTAGCAGCAGCGGCAACAGTAGCAGTGATGACGACG
AGCAAGACGAGGACGACGAGGAAGGGGTGGTTGATGACTTGGCCATGGCG
GCATTGGCCGCGGGGCTGGATGAAATGAGTGCCCCCACAGGGGCGTTAAT
GAATGCCCTTCAGCCTTCCCTACGGCAGAGCGTGGATGAGATTGTGGACG
ATAGGACAGGGCCTTTGCTGCAAATTTTAAAGGAGGTGGAGGAACGCTGC
GGTGATGATGGTGAGGGTGCCATCATTGCTGGTAAGGTTGAGGGAGTGGA
GGGGGAAGAAGCAGCGGTAGAGCAGGAAGAGGAGGAGAATGATGATGACG
ATAATGATGACGAGTCTATTCCTGGCCTCGGACTGGATTTGCCTTCGGAC
GATGATGACGAAGATGGGGGGGGAAGACGTAAGAAGAAAGGAGTAGGGTT
GCGAGGTCCCAAGACTCAAAATGAGGTGGTGGAGGTGATCCAACCCAAGG
AAAAGGAGGTAGAGGAAGAAGCAGAAGTCGCTGCACTAGGGTTGACCGAA
TCAGATGATATTGTCCCGTGTGGGACGGTACTGGCCGCACTTGAAGACGA
GAGGATAATCGTCGTACAGGCGCCTAGTCTGGCGAAGCAGGACGGGGGGA
TGAATAGGCCTTTGGACGAGGGGAGTTGGTTGTGTTTAATGGAGGGGAGA
ATAGTTTTGGGGAAGGTGAAGGAGGTTTTTGGGCCTGTGACACAGCCTTG
TTATCGTTTGCATTACAGAGCGGGATTATTGCCTGCAGCTGCTGTTGAAC
GAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGGAGCAGCAGAGGAGGGA
GGTAATGGCAGCAGCAGCAGCAACAGAACAACGACGACAGCAGCAGATGC
TGTGAATATTGCAATAAAGCCTGGTTTAGAGGTTGGATATGTGGCTCGAC
TGACAGACTTCATCGTGCCTCAGTCCCTGGCAAGCAAAGGGACGGATGCC
TCCAATGTCCACGACGAGGAGGTCGGGGTGGAGGAGCAGGAGTACTCTGA
CGACGAAGCTGAAGCTGCAGCCAAGGCAGCAAGGAAGAAGAATAAGAAAG
TCTCGGGAGCAAAGGAGGATGGGGGACTACTGAGTGTTGATCCACCAGGT
GCGGCTGAGACGGCGATAGGAGTAGGTGGGGTAGGAGGACGAGGAGTGAA
AAGAGGCGGGAGGGGGGGAAAGAGGGAGGTAGGACGGGGAAGAGGATGTT
TTGGAGAGAGGGGAGGGAGGTTTGGCGGTCGGGTGGGGGGGTAGGGAGGG
AGGGGAGAGGAGGACAAGGAGGAAGTGACTATCAGCCTTTCCAGCAGCAG
CTCCCCACCTTCAGTGCTGGAGGGAGGGTTGGGATCATCGGTTTTGGAGG
GAGAGGAGAAGAGGGGGAAGGTGGAGGTGGAGGTGGAGGTGGAGGAAGAG
GAATAAGATGGACTTACTTCCCTCATCAACCACAACCAGGCTTCTACCCC
ACTCCCCCTTCTCCTCCTTCCCTTCCTCTTTCCGTCCCTCATCGACACAC
AACTCCGGCATATTCCGCTGGTGCTCTTCCAGGCCAGCCTCCCCTTCCTC
CCGGGCCTCCTCCCCTTCACCAAACCTCACAACAATTCTACCTGCCCGCA
CCACAGCCGCATCAGCAGTATTTTCACCACCACCTCCAGCAGCAGCAGCA
GCCACCACCGCCTTCTTCTATCGCTGCTCGTCCTCCTCATCATGGCCATA
TGCCTGTAGCTCTTTCTTATACGGACAGTGTGCCGGGTCATCACATGCAG
CAACCGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCTA
TTCCCCTTCACGTCTTCAGCAACACGAGCAACGTTATCCCATGCAGCACC
AGCAGCAGCTGCAGTTTCTCCAACCGTCCTGGCCACACCCGTCGCCGCCG
CAACAGCAGTATCATCACCAACAGCAACGATCTCATCAGCCGGTGGCACC
ACAACAGCAGCACCAGCAGCAATACTGTCCTCAGCACCACCAGCCTCAGC
TGCAACAGCAGCACGTGCAGCAACAGCACCTACAGCAAGGGTCGTGGCAT
CACCAGCAGCAGCAGCAGCAGTTTCAAGCTCCTGGCGGCCAGCCGCAGCC
GCCGCCACCACCGGGATGGAGGCATGGGTAA

Coding sequence (CDS) from alignment at chr15:270187..272567+

>NO15G00880.1 ID=NO15G00880.1|Name=NO15G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at chr15:270187..272567+ (Nannochloropsis oceanica)
ATGGATATGGTTGAGCACAAGCGCGATGCCGCGGCAACTGTTGAGCCGGC
GGGGGGGTTTGTTGCCAACGGAATTGGGCAAGGCTTGAAGATCGATGGAC
AGCCCATGAAGGTGGAGGAGGAGAGGGAGGACACAGGCGCCGACGCCGAT
ACAGATGATAGTGACCACGACAACAATAGTGAAAGTGAGAGAGACGACAA
GGAAGAGAGCGGCAGTAGCAGCAGCGGCAACAGTAGCAGTGATGACGACG
AGCAAGACGAGGACGACGAGGAAGGGGTGGTTGATGACTTGGCCATGGCG
GCATTGGCCGCGGGGCTGGATGAAATGAGTGCCCCCACAGGGGCGTTAAT
GAATGCCCTTCAGCCTTCCCTACGGCAGAGCGTGGATGAGATTGTGGACG
ATAGGACAGGGCCTTTGCTGCAAATTTTAAAGGAGGTGGAGGAACGCTGC
GGTGATGATGGTGAGGGTGCCATCATTGCTGGTAAGGTTGAGGGAGTGGA
GGGGGAAGAAGCAGCGGTAGAGCAGGAAGAGGAGGAGAATGATGATGACG
ATAATGATGACGAGTCTATTCCTGGCCTCGGACTGGATTTGCCTTCGGAC
GATGATGACGAAGATGGGGGGGGAAGACGTAAGAAGAAAGGAGTAGGGTT
GCGAGGTCCCAAGACTCAAAATGAGGTGGTGGAGGTGATCCAACCCAAGG
AAAAGGAGGTAGAGGAAGAAGCAGAAGTCGCTGCACTAGGGTTGACCGAA
TCAGATGATATTGTCCCGTGTGGGACGGTACTGGCCGCACTTGAAGACGA
GAGGATAATCGTCGTACAGGCGCCTAGTCTGGCGAAGCAGGACGGGGGGA
TGAATAGGCCTTTGGACGAGGGGAGTTGGTTGTGTTTAATGGAGGGGAGA
ATAGTTTTGGGGAAGGTGAAGGAGGTTTTTGGGCCTGTGACACAGCCTTG
TTATCGTTTGCATTACAGAGCGGGATTATTGCCTGCAGCTGCTGTTGAAC
GAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGGAGCAGCAGAGGAGGGA
GGTAATGGCAGCAGCAGCAGCAACAGAACAACGACGACAGCAGCAGATGC
TGTGAATATTGCAATAAAGCCTGGTTTAGAGGTTGGATATGTGGCTCGAC
TGACAGACTTCATCGTGCCTCAGTCCCTGGCAAGCAAAGGGACGGATGCC
TCCAATGTCCACGACGAGGAGGTCGGGGTGGAGGAGCAGGAGTACTCTGA
CGACGAAGCTGAAGCTGCAGCCAAGGCAGCAAGGAAGAAGAATAAGAAAG
TCTCGGGAGCAAAGGAGGATGGGGGACTACTGAGTGTTGATCCACCAGGC
TTCTACCCCACTCCCCCTTCTCCTCCTTCCCTTCCTCTTTCCGTCCCTCA
TCGACACACAACTCCGGCATATTCCGCTGGTGCTCTTCCAGGCCAGCCTC
CCCTTCCTCCCGGGCCTCCTCCCCTTCACCAAACCTCACAACAATTCTAC
CTGCCCGCACCACAGCCGCATCAGCAGTATTTTCACCACCACCTCCAGCA
GCAGCAGCAGCCACCACCGCCTTCTTCTATCGCTGCTCGTCCTCCTCATC
ATGGCCATATGCCTGTAGCTCTTTCTTATACGGACAGTGTGCCGGGTCAT
CACATGCAGCAACCGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCTCTATTCCCCTTCACGTCTTCAGCAACACGAGCAACGTTATCCCA
TGCAGCACCAGCAGCAGCTGCAGTTTCTCCAACCGTCCTGGCCACACCCG
TCGCCGCCGCAACAGCAGTATCATCACCAACAGCAACGATCTCATCAGCC
GGTGGCACCACAACAGCAGCACCAGCAGCAATACTGTCCTCAGCACCACC
AGCCTCAGCTGCAACAGCAGCACGTGCAGCAACAGCACCTACAGCAAGGG
TCGTGGCATCACCAGCAGCAGCAGCAGCAGTTTCAAGCTCCTGGCGGCCA
GCCGCAGCCGCCGCCACCACCGGGATGGAGGCATGGGTAA

Synonyms

Publications