NO15G00710, NO15G00710 (gene) Nannochloropsis oceanica

Overview
NameNO15G00710
Unique NameNO15G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2121
Alignment locationchr15:229287..231407 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:229287..231407 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO15G00710 vs. NCBI_GenBank
Match: EWM22519.1 (hypothetical protein Naga_100558g1 [Nannochloropsis gaditana])

HSP 1 Score: 419.9 bits (1078), Expect = 1.100e-113
Identity = 215/341 (63.05%), Postives = 258/341 (75.66%), Query Frame = 0 
Query:  109 SSPSTSNKTSKALRIMMGALAVTCLTGTITHALPSHLLHPSSSPAGRSLLSATTAAAAPLSALQDKLSQTLGQGPLAPIATLLSWVLDAVEVTLDSFGWLLRLILWPILTPLNFLLHHFLLPSLP----LLTAPRTAIPALLHSLYSSLNFFSRQVSAGMSAYTQGLLALAFSTLGVTYQSLCSFLGLFFNLPGLQYLDAMDPRRHIPSTPTRFVLPSTPVSLP------SPSSFSLQQMYGRRWRVHAGKWSLVVPYWERVVMESQLARYQNTFHRSVVKARFGFPEIIRGPSPLLGGTFLVLTGIYLIYRGHMTSAVWIRQLQKETYGDRAWNPQTRLE 440
            S+       S +LRI++  LAV CLTGT+ HALP  ++  S +  G SLLSA TA+AAP S LQ+ L++TLGQGPLAP+A LLSW+LD +EV  D  G L RL+LWP+LTPLN LL H LLP LP    LLT+P+  +  +L  L   L     Q+  G++AY  G+LAL  STLG+ YQ+ C+ LGLFFNLPGLQ+ D MDPR  IPSTP RFVLPS+P S+P      S S+FSL+QMYGRRWRVHAGKWS VVPYWERVVME+QLARYQNTF +S +KARFGFPE++RGPSP LGGT ++LT  YLIYRGH+TSA+WIRQLQKETYGDRAW+PQTRLE
Sbjct:  107 SNKPQKRTASNSLRILLSVLAVVCLTGTVAHALPKQVVSASLTHPGSSLLSAATASAAPFSILQESLAKTLGQGPLAPVAVLLSWLLDVLEVGADLSGALFRLLLWPLLTPLNLLLRHVLLPVLPFSRSLLTSPQGTLLPILTQLLHGLGSSLAQLQGGLAAYANGILALLLSTLGIIYQTFCNGLGLFFNLPGLQFFDGMDPRLQIPSTPIRFVLPSSPSSVPASLPTSSGSTFSLRQMYGRRWRVHAGKWSWVVPYWERVVMEAQLARYQNTFEKSAIKARFGFPEVVRGPSPFLGGTLIILTLFYLIYRGHVTSAIWIRQLQKETYGDRAWSPQTRLE 447
The following BLAST results are available for this feature:
BLAST of NO15G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22519.11.100e-11363.05hypothetical protein Naga_100558g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001537NSK001537Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00710.1NO15G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587217gene_4620Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100558g1gene7924Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00710.1NO15G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00710 ID=NO15G00710|Name=NO15G00710|organism=Nannochloropsis oceanica|type=gene|length=2121bp
CCGCGTTCCATCGATAGAGTCGGTGTTGCTGTTGCCCCCGACGTGGGACC
GCTTGCACGCCTTCCAGGATCAAAAGAATTCGTGCATCTAGCGTCGAAGT
TGTCAAAAATAAGGTACTCCGACTGGTTATCGTGCCCTTCTTGCTTGTTG
CCTCATCATCCCTGCCTTTAAACCATCACTGCTGTCCACCCACACATCCT
TCATCTCAATCCATTTTACTTATCCCATCCTACAGGGGTAGTCATGGCGA
CGCGACCACTCTCTTCCCGTCCGCCACGGCCACCACGCCTTCTCCTCCTC
TCCATGGCCTTGCTAGCTGCCGCCACCACCGTCAAGGCCTTCCAGCTGCC
CCTCCTTCCCAGCAGCACTCGCATCGGCAGTACCATCTGTATCACTGACA
CTAGAATACTACCGCACGCCCTGCGGCCCCGCACACGCCCTTCTTCCTCC
CCTCTATTCGCATCTGCAGCCGCGGCAGCTCCCGGACAATCAGAGAACAG
TAGCTCAAGAAGACGTCGTGCCATTCCTCCCTTCGTCTCCGCCTTCCTCC
GCTCCCGTCGCTCCGCCTCCTCTCCTTCTACCAGCAACAAAACCTCCAAA
GCCCTTAGAATAATGATGGGCGCCTTGGCAGTCACCTGTCTCACTGGCAC
GATAACCCATGCTCTGCCTTCCCATCTTCTCCACCCATCCTCGTCCCCCG
CCGGACGCTCCCTCCTCTCAGCCACCACCGCCGCGGCCGCCCCTCTTTCC
GCCCTTCAAGACAAGCTTAGTCAAACCCTTGGCCAAGGCCCACTTGCTCC
CATTGCCACGCTCCTCTCCTGGGTGCTGGACGCGGTGGAAGTCACCCTGG
ACAGCTTTGGTTGGCTCCTCCGCCTCATCCTCTGGCCCATCCTGACCCCC
CTCAACTTCCTCCTCCATCACTTCCTCCTCCCCTCCCTCCCCCTCCTCAC
TGCCCCCCGCACCGCCATTCCCGCCCTCCTCCATTCCCTCTACTCCTCGC
TTAATTTTTTCTCCCGCCAAGTGTCTGCGGGCATGTCCGCCTACACCCAA
GGTCTGCTCGCCCTCGCCTTCTCCACCCTCGGCGTGACGTACCAGTCGCT
CTGCAGCTTCCTTGGCCTCTTTTTCAACCTCCCCGGCCTTCAGTACCTCG
ACGCCATGGACCCCCGTCGTCACATCCCTTCCACGCCCACCCGCTTCGTC
CTCCCCTCCACCCCTGTCTCCCTCCCGTCCCCCTCCTCCTTCTCGCTCCA
GCAGATGTACGGTCGCCGGTGGCGAGTGCATGCCGGGAAGTGGAGCCTGG
TTGTACCCTATTGGGAGAGGGTAGTGATGGAGTCGCAGCTGGCGCGGTAT
CAGAACACGTTTCACAGGAGTGTGGTGAAGGCCAGGTTTGGCTTCCCGGA
AATCATCCGAGGCCCTTCCCCTTTGTTGGGCGGGACGTTTTTAGTGCTGA
CGgtaagcaaggtctccctcactccctccctctctccctccctccttcag
ggcatctcccttatctatcgcgggcgcatgaccagtgctgtgtggatccg
tcagctgtagagacaaatccccttcagaggcattcatcccttcctccctc
cctccctccctcccttcctccttcagGGTATCTACCTCATCTATCGCGGG
CACATGACCAGCGCCGTGTGGATCCGGCAGCTGCAAAAAGAGACTTATGG
AGATCGGGCTTGGAACCCCCAGACGAGGCTAGAGGAGGAGGAGGGCGAGG
AGGGCGGGGAGGAAGGAGGGGAGGGGGAGGGAGGAGGAGGGAACAAGGAG
TAAAAGAGGATGGAAAAGAAGAGGAATATAAGAGATGACGATGGAGATGT
CTTGATAGGTTAGGTCGGAGAGAGGGAGGAAGGTGGGAGAGAAATCTTCT
TTGCCGACGAGCGTGCGAGGTGCGAGGAGTCCGTGACGTAATGACAGGGA
GTGGGCGCCAAGAGGCCCCTCTGTGTGTGTTGTGATTCGACACCAAAAAG
ACCTCGGGAGAGAGGAAGAAAAAGAAGAAAGAGGGCACTCGATAACATTG
AGAGGGAGACAGAGGAAGGAGGACAGGACATGCAAGAAGAATAAATGAAG
AACACAGACGCATGAACAGGG
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protein sequence of NO15G00710.1

>NO15G00710.1-protein ID=NO15G00710.1-protein|Name=NO15G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MATRPLSSRPPRPPRLLLLSMALLAAATTVKAFQLPLLPSSTRIGSTICI
TDTRILPHALRPRTRPSSSPLFASAAAAAPGQSENSSSRRRRAIPPFVSA
FLRSRRSASSPSTSNKTSKALRIMMGALAVTCLTGTITHALPSHLLHPSS
SPAGRSLLSATTAAAAPLSALQDKLSQTLGQGPLAPIATLLSWVLDAVEV
TLDSFGWLLRLILWPILTPLNFLLHHFLLPSLPLLTAPRTAIPALLHSLY
SSLNFFSRQVSAGMSAYTQGLLALAFSTLGVTYQSLCSFLGLFFNLPGLQ
YLDAMDPRRHIPSTPTRFVLPSTPVSLPSPSSFSLQQMYGRRWRVHAGKW
SLVVPYWERVVMESQLARYQNTFHRSVVKARFGFPEIIRGPSPLLGGTFL
VLTGIYLIYRGHMTSAVWIRQLQKETYGDRAWNPQTRLEEEEGEEGGEEG
GEGEGGGGNKE*
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Synonyms
Publications