NO15G00710.1, NO15G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00710.1
Unique NameNO15G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1947
Alignment locationchr15:229287..231407 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:229287..231407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00710.1 vs.
Match: EWM22519.1 (hypothetical protein Naga_100558g1 [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 1.300e-116
Identity = 257/477 (53.88%), Postives = 320/477 (67.09%), Query Frame = 0 
Query:    1 MATRPLSSRPPRPPRLLLLSMALLAAATTVKAFQLPLLPSSTRIGSTICITDTRILPHA-LRPRTRPSSSPLFASAAAAAP---GQSENSSSRRRRAIP---PFVSAFLRSRRSASSPSTSNKTSKALRIMMGALAVTCLTGTITHALPSHLLHPSSSPAGRSLLSATTAAAAPLSALQDKLSQTLGQGPLAPIATLLSWVLDAVEVTLDSFGWLLRLILWPILTPLNFLLHHFLLPSLP----LLTAPRTAIPALLHSLYSSLNFFSRQVSAGMSAYTQGLLALAFSTLGVTYQSLCSFLGLFFNLPGLQYLDAMDPRRHIPSTPTRFVLPSTPVSLP------SPSSFSLQQMYGRRWRVHAGKWSLVVPYWERVVMESQLARYQNTFHRSVVKARFGFPEIIRGPSPLLGGTFLVLTGIYLIYRGHMTSAVWIRQLQKETYGDRAWNPQTRLEEEEGEEGGEEGGEGEGGGGNK 461
            M  R  SS+  RP    LL +A+ + +  V+AFQ+P       +      T  RI  H    P  + S S  F+ ++++ P     ++ +  +R R+     P  S F  + RS  +       S +LRI++  LAV CLTGT+ HALP  ++  S +  G SLLSA TA+AAP S LQ+ L++TLGQGPLAP+A LLSW+LD +EV  D  G L RL+LWP+LTPLN LL H LLP LP    LLT+P+  +  +L  L   L     Q+  G++AY  G+LAL  STLG+ YQ+ C+ LGLFFNLPGLQ+ D MDPR  IPSTP RFVLPS+P S+P      S S+FSL+QMYGRRWRVHAGKWS VVPYWERVVME+QLARYQNTF +S +KARFGFPE++RGPSP LGGT ++LT  YLIYRGH+TSA+WIRQLQKETYGDRAW+PQTRLEEEEGE  GE GG G G G  K
Sbjct:    2 MRQRSSSSQLCRPLSWGLLVLAV-SHSVRVQAFQVP-------VSRPAAFTRARIPFHRDTTPFVQKSRSTTFSPSSSSLPVLPHDADKAVGQRGRSFSFSFPLASLFKPAHRS--NKPQKRTASNSLRILLSVLAVVCLTGTVAHALPKQVVSASLTHPGSSLLSAATASAAPFSILQESLAKTLGQGPLAPVAVLLSWLLDVLEVGADLSGALFRLLLWPLLTPLNLLLRHVLLPVLPFSRSLLTSPQGTLLPILTQLLHGLGSSLAQLQGGLAAYANGILALLLSTLGIIYQTFCNGLGLFFNLPGLQFFDGMDPRLQIPSTPIRFVLPSSPSSVPASLPTSSGSTFSLRQMYGRRWRVHAGKWSWVVPYWERVVMEAQLARYQNTFEKSAIKARFGFPEVVRGPSPFLGGTLIILTLFYLIYRGHVTSAIWIRQLQKETYGDRAWSPQTRLEEEEGEGEGEGGGGGRGPGMRK 468
The following BLAST results are available for this feature:
BLAST of NO15G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22519.11.300e-11653.88hypothetical protein Naga_100558g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00710NO15G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00710.1NO15G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00710.1.cds1NO15G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00710.1.cds2NO15G00710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00710.1 ID=NO15G00710.1|Name=NO15G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp
CCGCGTTCCATCGATAGAGTCGGTGTTGCTGTTGCCCCCGACGTGGGACC
GCTTGCACGCCTTCCAGGATCAAAAGAATTCGTGCATCTAGCGTCGAAGT
TGTCAAAAATAAGGTACTCCGACTGGTTATCGTGCCCTTCTTGCTTGTTG
CCTCATCATCCCTGCCTTTAAACCATCACTGCTGTCCACCCACACATCCT
TCATCTCAATCCATTTTACTTATCCCATCCTACAGGGGTAGTCATGGCGA
CGCGACCACTCTCTTCCCGTCCGCCACGGCCACCACGCCTTCTCCTCCTC
TCCATGGCCTTGCTAGCTGCCGCCACCACCGTCAAGGCCTTCCAGCTGCC
CCTCCTTCCCAGCAGCACTCGCATCGGCAGTACCATCTGTATCACTGACA
CTAGAATACTACCGCACGCCCTGCGGCCCCGCACACGCCCTTCTTCCTCC
CCTCTATTCGCATCTGCAGCCGCGGCAGCTCCCGGACAATCAGAGAACAG
TAGCTCAAGAAGACGTCGTGCCATTCCTCCCTTCGTCTCCGCCTTCCTCC
GCTCCCGTCGCTCCGCCTCCTCTCCTTCTACCAGCAACAAAACCTCCAAA
GCCCTTAGAATAATGATGGGCGCCTTGGCAGTCACCTGTCTCACTGGCAC
GATAACCCATGCTCTGCCTTCCCATCTTCTCCACCCATCCTCGTCCCCCG
CCGGACGCTCCCTCCTCTCAGCCACCACCGCCGCGGCCGCCCCTCTTTCC
GCCCTTCAAGACAAGCTTAGTCAAACCCTTGGCCAAGGCCCACTTGCTCC
CATTGCCACGCTCCTCTCCTGGGTGCTGGACGCGGTGGAAGTCACCCTGG
ACAGCTTTGGTTGGCTCCTCCGCCTCATCCTCTGGCCCATCCTGACCCCC
CTCAACTTCCTCCTCCATCACTTCCTCCTCCCCTCCCTCCCCCTCCTCAC
TGCCCCCCGCACCGCCATTCCCGCCCTCCTCCATTCCCTCTACTCCTCGC
TTAATTTTTTCTCCCGCCAAGTGTCTGCGGGCATGTCCGCCTACACCCAA
GGTCTGCTCGCCCTCGCCTTCTCCACCCTCGGCGTGACGTACCAGTCGCT
CTGCAGCTTCCTTGGCCTCTTTTTCAACCTCCCCGGCCTTCAGTACCTCG
ACGCCATGGACCCCCGTCGTCACATCCCTTCCACGCCCACCCGCTTCGTC
CTCCCCTCCACCCCTGTCTCCCTCCCGTCCCCCTCCTCCTTCTCGCTCCA
GCAGATGTACGGTCGCCGGTGGCGAGTGCATGCCGGGAAGTGGAGCCTGG
TTGTACCCTATTGGGAGAGGGTAGTGATGGAGTCGCAGCTGGCGCGGTAT
CAGAACACGTTTCACAGGAGTGTGGTGAAGGCCAGGTTTGGCTTCCCGGA
AATCATCCGAGGCCCTTCCCCTTTGTTGGGCGGGACGTTTTTAGTGCTGA
CGGGTATCTACCTCATCTATCGCGGGCACATGACCAGCGCCGTGTGGATC
CGGCAGCTGCAAAAAGAGACTTATGGAGATCGGGCTTGGAACCCCCAGAC
GAGGCTAGAGGAGGAGGAGGGCGAGGAGGGCGGGGAGGAAGGAGGGGAGG
GGGAGGGAGGAGGAGGGAACAAGGAGTAAAAGAGGATGGAAAAGAAGAGG
AATATAAGAGATGACGATGGAGATGTCTTGATAGGTTAGGTCGGAGAGAG
GGAGGAAGGTGGGAGAGAAATCTTCTTTGCCGACGAGCGTGCGAGGTGCG
AGGAGTCCGTGACGTAATGACAGGGAGTGGGCGCCAAGAGGCCCCTCTGT
GTGTGTTGTGATTCGACACCAAAAAGACCTCGGGAGAGAGGAAGAAAAAG
AAGAAAGAGGGCACTCGATAACATTGAGAGGGAGACAGAGGAAGGAGGAC
AGGACATGCAAGAAGAATAAATGAAGAACACAGACGCATGAACAGGG
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protein sequence of NO15G00710.1

>NO15G00710.1-protein ID=NO15G00710.1-protein|Name=NO15G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MATRPLSSRPPRPPRLLLLSMALLAAATTVKAFQLPLLPSSTRIGSTICI
TDTRILPHALRPRTRPSSSPLFASAAAAAPGQSENSSSRRRRAIPPFVSA
FLRSRRSASSPSTSNKTSKALRIMMGALAVTCLTGTITHALPSHLLHPSS
SPAGRSLLSATTAAAAPLSALQDKLSQTLGQGPLAPIATLLSWVLDAVEV
TLDSFGWLLRLILWPILTPLNFLLHHFLLPSLPLLTAPRTAIPALLHSLY
SSLNFFSRQVSAGMSAYTQGLLALAFSTLGVTYQSLCSFLGLFFNLPGLQ
YLDAMDPRRHIPSTPTRFVLPSTPVSLPSPSSFSLQQMYGRRWRVHAGKW
SLVVPYWERVVMESQLARYQNTFHRSVVKARFGFPEIIRGPSPLLGGTFL
VLTGIYLIYRGHMTSAVWIRQLQKETYGDRAWNPQTRLEEEEGEEGGEEG
GEGEGGGGNKE*
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mRNA from alignment at chr15:229287..231407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00710.1 ID=NO15G00710.1|Name=NO15G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp|location=Sequence derived from alignment at chr15:229287..231407+ (Nannochloropsis oceanica)
CCGCGTTCCATCGATAGAGTCGGTGTTGCTGTTGCCCCCGACGTGGGACC
GCTTGCACGCCTTCCAGGATCAAAAGAATTCGTGCATCTAGCGTCGAAGT
TGTCAAAAATAAGGTACTCCGACTGGTTATCGTGCCCTTCTTGCTTGTTG
CCTCATCATCCCTGCCTTTAAACCATCACTGCTGTCCACCCACACATCCT
TCATCTCAATCCATTTTACTTATCCCATCCTACAGGGGTAGTCATGGCGA
CGCGACCACTCTCTTCCCGTCCGCCACGGCCACCACGCCTTCTCCTCCTC
TCCATGGCCTTGCTAGCTGCCGCCACCACCGTCAAGGCCTTCCAGCTGCC
CCTCCTTCCCAGCAGCACTCGCATCGGCAGTACCATCTGTATCACTGACA
CTAGAATACTACCGCACGCCCTGCGGCCCCGCACACGCCCTTCTTCCTCC
CCTCTATTCGCATCTGCAGCCGCGGCAGCTCCCGGACAATCAGAGAACAG
TAGCTCAAGAAGACGTCGTGCCATTCCTCCCTTCGTCTCCGCCTTCCTCC
GCTCCCGTCGCTCCGCCTCCTCTCCTTCTACCAGCAACAAAACCTCCAAA
GCCCTTAGAATAATGATGGGCGCCTTGGCAGTCACCTGTCTCACTGGCAC
GATAACCCATGCTCTGCCTTCCCATCTTCTCCACCCATCCTCGTCCCCCG
CCGGACGCTCCCTCCTCTCAGCCACCACCGCCGCGGCCGCCCCTCTTTCC
GCCCTTCAAGACAAGCTTAGTCAAACCCTTGGCCAAGGCCCACTTGCTCC
CATTGCCACGCTCCTCTCCTGGGTGCTGGACGCGGTGGAAGTCACCCTGG
ACAGCTTTGGTTGGCTCCTCCGCCTCATCCTCTGGCCCATCCTGACCCCC
CTCAACTTCCTCCTCCATCACTTCCTCCTCCCCTCCCTCCCCCTCCTCAC
TGCCCCCCGCACCGCCATTCCCGCCCTCCTCCATTCCCTCTACTCCTCGC
TTAATTTTTTCTCCCGCCAAGTGTCTGCGGGCATGTCCGCCTACACCCAA
GGTCTGCTCGCCCTCGCCTTCTCCACCCTCGGCGTGACGTACCAGTCGCT
CTGCAGCTTCCTTGGCCTCTTTTTCAACCTCCCCGGCCTTCAGTACCTCG
ACGCCATGGACCCCCGTCGTCACATCCCTTCCACGCCCACCCGCTTCGTC
CTCCCCTCCACCCCTGTCTCCCTCCCGTCCCCCTCCTCCTTCTCGCTCCA
GCAGATGTACGGTCGCCGGTGGCGAGTGCATGCCGGGAAGTGGAGCCTGG
TTGTACCCTATTGGGAGAGGGTAGTGATGGAGTCGCAGCTGGCGCGGTAT
CAGAACACGTTTCACAGGAGTGTGGTGAAGGCCAGGTTTGGCTTCCCGGA
AATCATCCGAGGCCCTTCCCCTTTGTTGGGCGGGACGTTTTTAGTGCTGA
CGGTAAGCAAGGTCTCCCTCACTCCCTCCCTCTCTCCCTCCCTCCTTCAG
GGCATCTCCCTTATCTATCGCGGGCGCATGACCAGTGCTGTGTGGATCCG
TCAGCTGTAGAGACAAATCCCCTTCAGAGGCATTCATCCCTTCCTCCCTC
CCTCCCTCCCTCCCTTCCTCCTTCAGGGTATCTACCTCATCTATCGCGGG
CACATGACCAGCGCCGTGTGGATCCGGCAGCTGCAAAAAGAGACTTATGG
AGATCGGGCTTGGAACCCCCAGACGAGGCTAGAGGAGGAGGAGGGCGAGG
AGGGCGGGGAGGAAGGAGGGGAGGGGGAGGGAGGAGGAGGGAACAAGGAG
TAAAAGAGGATGGAAAAGAAGAGGAATATAAGAGATGACGATGGAGATGT
CTTGATAGGTTAGGTCGGAGAGAGGGAGGAAGGTGGGAGAGAAATCTTCT
TTGCCGACGAGCGTGCGAGGTGCGAGGAGTCCGTGACGTAATGACAGGGA
GTGGGCGCCAAGAGGCCCCTCTGTGTGTGTTGTGATTCGACACCAAAAAG
ACCTCGGGAGAGAGGAAGAAAAAGAAGAAAGAGGGCACTCGATAACATTG
AGAGGGAGACAGAGGAAGGAGGACAGGACATGCAAGAAGAATAAATGAAG
AACACAGACGCATGAACAGGG
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Coding sequence (CDS) from alignment at chr15:229287..231407+

>NO15G00710.1 ID=NO15G00710.1|Name=NO15G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr15:229287..231407+ (Nannochloropsis oceanica)
ATGGCGACGCGACCACTCTCTTCCCGTCCGCCACGGCCACCACGCCTTCT
CCTCCTCTCCATGGCCTTGCTAGCTGCCGCCACCACCGTCAAGGCCTTCC
AGCTGCCCCTCCTTCCCAGCAGCACTCGCATCGGCAGTACCATCTGTATC
ACTGACACTAGAATACTACCGCACGCCCTGCGGCCCCGCACACGCCCTTC
TTCCTCCCCTCTATTCGCATCTGCAGCCGCGGCAGCTCCCGGACAATCAG
AGAACAGTAGCTCAAGAAGACGTCGTGCCATTCCTCCCTTCGTCTCCGCC
TTCCTCCGCTCCCGTCGCTCCGCCTCCTCTCCTTCTACCAGCAACAAAAC
CTCCAAAGCCCTTAGAATAATGATGGGCGCCTTGGCAGTCACCTGTCTCA
CTGGCACGATAACCCATGCTCTGCCTTCCCATCTTCTCCACCCATCCTCG
TCCCCCGCCGGACGCTCCCTCCTCTCAGCCACCACCGCCGCGGCCGCCCC
TCTTTCCGCCCTTCAAGACAAGCTTAGTCAAACCCTTGGCCAAGGCCCAC
TTGCTCCCATTGCCACGCTCCTCTCCTGGGTGCTGGACGCGGTGGAAGTC
ACCCTGGACAGCTTTGGTTGGCTCCTCCGCCTCATCCTCTGGCCCATCCT
GACCCCCCTCAACTTCCTCCTCCATCACTTCCTCCTCCCCTCCCTCCCCC
TCCTCACTGCCCCCCGCACCGCCATTCCCGCCCTCCTCCATTCCCTCTAC
TCCTCGCTTAATTTTTTCTCCCGCCAAGTGTCTGCGGGCATGTCCGCCTA
CACCCAAGGTCTGCTCGCCCTCGCCTTCTCCACCCTCGGCGTGACGTACC
AGTCGCTCTGCAGCTTCCTTGGCCTCTTTTTCAACCTCCCCGGCCTTCAG
TACCTCGACGCCATGGACCCCCGTCGTCACATCCCTTCCACGCCCACCCG
CTTCGTCCTCCCCTCCACCCCTGTCTCCCTCCCGTCCCCCTCCTCCTTCT
CGCTCCAGCAGATGTACGGTCGCCGGTGGCGAGTGCATGCCGGGAAGTGG
AGCCTGGTTGTACCCTATTGGGAGAGGGTAGTGATGGAGTCGCAGCTGGC
GCGGTATCAGAACACGTTTCACAGGAGTGTGGTGAAGGCCAGGTTTGGCT
TCCCGGAAATCATCCGAGGCCCTTCCCCTTTGTTGGGCGGGACGTTTTTA
GTGCTGACGGGTATCTACCTCATCTATCGCGGGCACATGACCAGCGCCGT
GTGGATCCGGCAGCTGCAAAAAGAGACTTATGGAGATCGGGCTTGGAACC
CCCAGACGAGGCTAGAGGAGGAGGAGGGCGAGGAGGGCGGGGAGGAAGGA
GGGGAGGGGGAGGGAGGAGGAGGGAACAAGGAGTAA
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Synonyms
Publications