NO15G00690, NO15G00690 (gene) Nannochloropsis oceanica

Overview
NameNO15G00690
Unique NameNO15G00690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2384
Alignment locationchr15:225525..227908 +

Link to JBrowse

Properties
Property NameValue
DescriptionPhytanoyl-CoA dioxygenase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:225525..227908 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008775Phytyl_CoA_dOase
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO15G00690 vs. NCBI_GenBank
Match: EWM20072.1 (Phytanoyl-CoA dioxygenase, partial [Nannochloropsis gaditana])

HSP 1 Score: 331.3 bits (848), Expect = 4.900e-87
Identity = 152/181 (83.98%), Postives = 163/181 (90.06%), Query Frame = 0
Query:  268 PRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGRYELKGYGRMEVGDGSWHHGWCLHSSGPNDEDEDRVALSLCFVADGVEMLNVGEE--GKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVWDEA 447
            PRVRLYQDSTFLKR GDGPTLWHSDL+MAPFHTN+AVT+WLPLTPI PE+EGGTGLLFAS SHRDFALSFWEDAKGGGRRDLEGRY L  YGRMEVGD +WHHGWCLHSSGPND +EDR+A +LCFVADG EML  GE   G GRGPDDEDEESYRDW G+VG RVGE+EHV+LPLVWDEA
Sbjct:   16 PRVRLYQDSTFLKRVGDGPTLWHSDLSMAPFHTNEAVTMWLPLTPIPPEDEGGTGLLFASGSHRDFALSFWEDAKGGGRRDLEGRYALDSYGRMEVGDATWHHGWCLHSSGPNDLEEDRMAFTLCFVADGAEMLEGGEGKLGGGRGPDDEDEESYRDWRGKVGRRVGEKEHVYLPLVWDEA 196          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: XP_005762908.1 (hypothetical protein EMIHUDRAFT_358197 [Emiliania huxleyi CCMP1516] >EOD10479.1 hypothetical protein EMIHUDRAFT_358197 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 224.6 bits (571), Expect = 6.500e-55
Identity = 126/293 (43.00%), Postives = 164/293 (55.97%), Query Frame = 0
Query:  159 LLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQKIRVMLGQE-----AYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGR---YELKGYGRMEVGDGSWHHGWCLHSSGPNDEDEDRVALSLCFVADGVEMLNVGEEGKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVW 444
            +L +ER GH  T+ L          K V   + + +  ALRQK+RV+LG +      +    +      ++ E + +  +PF+Q FN WR    V +L  +   AG AA LL   RVRLYQDS FLKR GDGPT WHSDL+MAP  TN  VT WLPL  +A  ++GG+ L+FAS SHRD AL+FW    G  RR ++     Y L+  G +  GD +WHHGW LHS+ PN  D  R A+++ F ADG   L    +G  R  DDED ES   W+G+V      R H  LPLVW
Sbjct:    1 MLEFERTGHVRTRKLLPGAATSALSKEVDRLYTERESEALRQKVRVLLGDDRLARAEHKSAASPHVLRRILREELPEGAVPFMQLFNLWRTSPMVHELWRSPALAGTAASLLGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWH---GDPRRPVDASTRGYPLRDGGALRAGDATWHHGWVLHSAAPNMGDVPRRAVAVSFYADGASRL----QGALRSQDDEDAESCVAWLGDVRPGRAAR-HRLLPLVW 285          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: XP_005764965.1 (hypothetical protein EMIHUDRAFT_371302 [Emiliania huxleyi CCMP1516] >EOD12536.1 hypothetical protein EMIHUDRAFT_371302 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 222.2 bits (565), Expect = 3.200e-54
Identity = 125/293 (42.66%), Postives = 164/293 (55.97%), Query Frame = 0
Query:  159 LLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQKIRVMLGQE-----AYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGR---YELKGYGRMEVGDGSWHHGWCLHSSGPNDEDEDRVALSLCFVADGVEMLNVGEEGKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVW 444
            +L +ER GH  T+ L          K V   + + +  ALRQK+RV+LG +      +    +      ++ E + +  +PF+Q FN WR    V +L  +   AG AA LL   RVRLYQDS FLKR GDGPT WHSDL+MAP  TN  VT WLPL  +A  ++GG+ L+FAS SHRD AL+FW    G  RR ++     Y L+  G +  GD +WHHGW LHS+ PN  D  R A+++ F ADG   L    +G  R   DED ES   W+G+V      R H +LPLVW
Sbjct:    1 MLEFERTGHVRTRKLLPGAATSALSKEVDRLYTERESEALRQKVRVLLGDDRLARAEHKSAASPHVLRRILREELPEGAVPFMQLFNLWRTSPMVHELWRSPALAGTAASLLGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWH---GDPRRPVDASTRGYPLRDGGALRAGDATWHHGWVLHSAAPNMGDVPRRAVAVSFYADGASRL----QGALRSQHDEDAESCVAWLGDVRPGRAAR-HRWLPLVW 285          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: GAQ88817.1 (hypothetical protein KFL_004610120 [Klebsormidium nitens])

HSP 1 Score: 215.7 bits (548), Expect = 3.000e-52
Identity = 129/295 (43.73%), Postives = 173/295 (58.64%), Query Frame = 0
Query:  156 LPQLLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQKIRVMLGQEAYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGR-YELKGYGRMEVGDGSWHHGWCLHSSGPNDEDED-RVALSLCFVADGVEMLNVGEEGKGRGPDDEDEESYRDWVGEVGARVGE-REHVFLPLVWDEAL 448
            L QLL +ER GH L + L   + M +  + + AA  +++L A R ++ V+      +    IE+   V+ E    D + FLQ FN  R  + VR+LV + R A VAA LL A +VRLYQD  FLK+ G G T WHSDLNM P  TN  VTLW+PL  +   +E  +GLLFAS SHRDF+L++W+D +  G  DLE R Y L+ +G +++GD + HHGWCLH + P  ED D R ALS+ + ADG  +L+       R P DED  S+R W      R G+   H  LPLV+  AL
Sbjct:   79 LKQLLQFERTGHVLVRQLVPEEAMEECAEEIWAAAREQELEAYRHRVAVLCPGVDASSVSNIEQALAVLAEHA-TDELGFLQMFNLHRYSRTVRELVTSPRLARVAADLLGASKVRLYQDCLFLKQPGFGATNWHSDLNMVPLDTNAFVTLWIPLRAM---DEDDSGLLFASGSHRDFSLAYWQDLE--GMEDLERREYLLEDHGALDLGDATCHHGWCLHYASPQPEDSDARAALSISYFADGARVLDT--RHARRKPHDEDAWSFRGW--RQALREGDLANHPLLPLVYPAAL 363          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: XP_009041377.1 (hypothetical protein AURANDRAFT_67616 [Aureococcus anophagefferens] >EGB03953.1 hypothetical protein AURANDRAFT_67616 [Aureococcus anophagefferens])

HSP 1 Score: 213.4 bits (542), Expect = 1.500e-51
Identity = 127/315 (40.32%), Postives = 165/315 (52.38%), Query Frame = 0
Query:  129 RLGTDWAWSVSPKRSLPPLSTPYPSLPLPQLLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQKIRVMLGQEAYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGRYELKGYGRMEVGDGSWHHGWCLHSSGPNDEDEDRVALSLCFVADGVEMLNVGEEGKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVW 444
            R+  D A  V+    L  LS   P L    LL +ERDGH  T+ L + DE+    + V      E   A+R                      E M++  D +  PFLQTFNA R++   R++    R AGVAAQLL   RVRLYQD  F KR GD PT WHSDL+ +P  TN  VT W PL  +   EEGGTGL +AS SHRD AL  W    G    D +GRY++  +G    GD SWHHGW LHS+ P +  EDR A+++ F ADG  ++   +E      +DED  SY  W+G++       +H  LP+V+
Sbjct:  232 RVAADAAADVA---GLESLSEEAPPLSASALLRFERDGHLCTRSLLTDDEVAAIAEPVARIAAAEAADAVRH--------------------AEAMNDLHDGERAPFLQTFNAHRRHAAARRVASCPRLAGVAAQLLGCDRVRLYQDCIFKKRAGDEPTNWHSDLHTSPLDTNGFVTCWFPLHAVPASEEGGTGLAYASGSHRDLALPMWYGQDG----DCDGRYDVVDHGAYAPGDVSWHHGWLLHSA-PENVLEDRTAVAVSFFADGAHLI---DEAGMLCVNDEDAPSYEAWLGDLEPG-APADHALLPVVY 514          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: XP_001415713.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO94005.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 209.9 bits (533), Expect = 1.700e-50
Identity = 115/290 (39.66%), Postives = 164/290 (56.55%), Query Frame = 0
Query:  156 LPQLLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQKIRVMLGQEAYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQD-VRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGRYELKGYGRMEVGDGSWHHGWCLHSSGPNDED-EDRVALSLCFVADGVEMLNVGEEGKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVW 444
            L + L +ER+GHT  +G     EM   VK +       ++ A R ++ V+  Q    + + +E+ +  + +   +D + FLQTFN  R+     R+ +++KRFA +AA+L+   R R+YQ   F+K  G   T WHSDLNM P  TND VTLW+PL  +   EE    L FA+RSHRDF+L +W   +  G  DLEGRYE+  Y  +++GD + HHGWCLH S P  ED   R ALS+C+ ADG   L+  +    R P DED  SY  W+ ++       +H  LP+VW
Sbjct:  126 LEECLRYEREGHTCIRGAVDAMEMIPMVKALSGEIMSRRMEAYRHRVSVLCPQVDARELRDVEDAKRALKKHSQED-VGFLQTFNLHREQTSAAREYIMSKRFAKIAAELMGCERARIYQSCIFVKEPGMAETNWHSDLNMVPLDTNDFVTLWIPLRSL---EEDDAALHFANRSHRDFSLPYWRTLE--GMEDLEGRYEIDTYDELDLGDLTAHHGWCLHWSPPQPEDCVPRYALSVCYFADGARRLDTDQ--LRRVPHDEDAWSYDSWLKDIKPG-AVAKHPELPIVW 406          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: XP_013905047.1 (hypothetical protein MNEG_1935 [Monoraphidium neglectum] >KIZ06028.1 hypothetical protein MNEG_1935 [Monoraphidium neglectum])

HSP 1 Score: 209.1 bits (531), Expect = 2.800e-50
Identity = 121/291 (41.58%), Postives = 167/291 (57.39%), Query Frame = 0
Query:  158 QLLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQKIRVMLGQEAYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGR-YELKGYGRMEVGDGSWHHGWCLHSSGPND-EDEDRVALSLCFVADGVEMLNVGEEGKGRGP--DDEDEESYRDWVGEVGARVGEREHVFLPLVWD 445
            QLL WER+G+ +T+G     ++      V A  +++KL+ALR ++RV+      +  +T EE   ++      D + FLQ F+  R    V +     R AGVAAQLL A RVRL+QD+ F K  G   T WHSDL M P  TN  VT W+PL  +  +E   +G++FA+ SHRDFAL FW + +G G  DLE R Y ++G G M VGD SWHHGW LH +G      E R+A+++ ++ADG  +L+V  +   R     DED E Y  W+ E+ A    R H  LP+VWD
Sbjct:  414 QLLRWERNGYIVTRGCLPASDVAALRPEVEAVIDEQKLAALRHRVRVLCPGANPDSIRTCEEALRLIAR-DGTDRLGFLQFFHLHRSSAAVLRAAAGARLAGVAAQLLGARRVRLFQDAVFYKEPGFDVTNWHSDLRMTPLDTNSYVTAWVPLRAVQGDEH-DSGMVFAAGSHRDFALPFWHNIQGVG--DLEARGYRIEGTGPMAVGDVSWHHGWTLHCAGQQPRRSEPRLAIAISYMADGARLLDVKGDPSLRKELLHDEDAEGYGAWLKELRAGAVAR-HALLPIVWD 699          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: CBJ48606.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 206.8 bits (525), Expect = 1.400e-49
Identity = 105/199 (52.76%), Postives = 133/199 (66.83%), Query Frame = 0
Query:  246 QDVRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGRYELKGYGRMEVGDGSWHHGWCLHSSGPNDEDEDRVALSLCFVADGVEMLNVGEEGKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVWD 445
            + + ++VL+ R A VAAQLL   RVRLYQDSTF KR GDGPT WHSDLNMAP   ND VT W+PL  +  + EGG+ L+FASRSHRDFAL+ W D++   R DL GRY  K +  +  GD +WHHGW LHSS  N  +  RVAL++ +  DG  +L+   +  GR PD ED+ SY DWVG++    G  +H  +PLVWD
Sbjct:   10 ETIERVVLSPRLAHVAAQLLGCQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSR--LREDLSGRYREKDHAPLAAGDITWHHGWTLHSSLGNRRETPRVALAVSYFRDGTCLLS---DTAGRSPDPEDKWSYGDWVGDLPVG-GVVKHPSVPLVWD 202          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: PNW80523.1 (hypothetical protein CHLRE_07g320900v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 203.8 bits (517), Expect = 1.200e-48
Identity = 129/323 (39.94%), Postives = 169/323 (52.32%), Query Frame = 0
Query:  142 RSLPPLSTPYPSLPLPQLLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQKIRVMLGQEAYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPI-------APEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGR-YELKGYGRMEVGDGSWHHGWCLHSSGPND-EDEDRVALSLCFVADGVEMLNVGEEGKGRGP--DDEDEESYRDWVGE-VGARVGE-REHVFLPLVWDEALEREG 452
            R+  P+ST   SL    LL +ERDG  +T+ L +P+ +              +L +LR ++RV+      N+  T  E    + +    D + FLQ FN  R  + V ++ L +  A VAAQLL   RVR+YQDS FLK  G   T WHSDL MAPF TN  VT W+PL P+         +    +GL+FA+ SHRDFAL FW D  G   RDL  R Y +K  G ME+GD SWHHGW LH + P       R+ALS+ F ADG  +L    +   R     DED ESY  W+ + V A+ G    H  LP+VW +     G
Sbjct:  153 RARSPVST--TSLSDSVLLRYERDGFVVTRNLLAPESVLQLRNECEGEVNMRRLDSLRHRVRVLCPSVEANEITTEAEARAALQKNA-SDPLGFLQFFNLHRSNETVARVALGQELAAVAAQLLGVRRVRVYQDSLFLKEPGFAETNWHSDLRMAPFDTNQLVTAWIPLRPVRGARSANGSKSPPDSGLMFAAGSHRDFALPFWHDMDG---RDLSDRGYVMKDCGPMEMGDVSWHHGWVLHCAAPQPLGTPPRLALSVAFFADGARVLPRRSDPSVRADLLHDEDLESYAAWLPQLVAAKDGAVARHRLLPVVWPQEASEAG 469          
BLAST of NO15G00690 vs. NCBI_GenBank
Match: XP_001701035.1 (predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 203.0 bits (515), Expect = 2.000e-48
Identity = 123/306 (40.20%), Postives = 161/306 (52.61%), Query Frame = 0
Query:  159 LLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQKIRVMLGQEAYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQLVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPI-------APEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGR-YELKGYGRMEVGDGSWHHGWCLHSSGPND-EDEDRVALSLCFVADGVEMLNVGEEGKGRGP--DDEDEESYRDWVGE-VGARVGE-REHVFLPLVWDEALEREG 452
            LL +ERDG  +T+ L +P+ +              +L +LR ++RV+      N+  T  E    + +    D + FLQ FN  R  + V ++ L +  A VAAQLL   RVR+YQDS FLK  G   T WHSDL MAPF TN  VT W+PL P+         +    +GL+FA+ SHRDFAL FW D  G   RDL  R Y +K  G ME+GD SWHHGW LH + P       R+ALS+ F ADG  +L    +   R     DED ESY  W+ + V A+ G    H  LP+VW +     G
Sbjct:   26 LLRYERDGFVVTRNLLAPESVLQLRNECEGEVNMRRLDSLRHRVRVLCPSVEANEITTEAEARAALQKNA-SDPLGFLQFFNLHRSNETVARVALGQELAAVAAQLLGVRRVRVYQDSLFLKEPGFAETNWHSDLRMAPFDTNQLVTAWIPLRPVRGARSANGSKSPPDSGLMFAAGSHRDFALPFWHDMDG---RDLSDRGYVMKDCGPMEMGDVSWHHGWVLHCAAPQPLGTPPRLALSVAFFADGARVLPRRSDPSVRADLLHDEDLESYAAWLPQLVAAKDGAVARHRLLPVVWPQEASEAG 327          
The following BLAST results are available for this feature:
BLAST of NO15G00690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20072.14.900e-8783.98Phytanoyl-CoA dioxygenase, partial [Nannochloropsi... [more]
XP_005762908.16.500e-5543.00hypothetical protein EMIHUDRAFT_358197 [Emiliania ... [more]
XP_005764965.13.200e-5442.66hypothetical protein EMIHUDRAFT_371302 [Emiliania ... [more]
GAQ88817.13.000e-5243.73hypothetical protein KFL_004610120 [Klebsormidium ... [more]
XP_009041377.11.500e-5140.32hypothetical protein AURANDRAFT_67616 [Aureococcus... [more]
XP_001415713.11.700e-5039.66predicted protein [Ostreococcus lucimarinus CCE990... [more]
XP_013905047.12.800e-5041.58hypothetical protein MNEG_1935 [Monoraphidium negl... [more]
CBJ48606.11.400e-4952.76conserved unknown protein [Ectocarpus siliculosus][more]
PNW80523.11.200e-4839.94hypothetical protein CHLRE_07g320900v5 [Chlamydomo... [more]
XP_001701035.12.000e-4840.20predicted protein [Chlamydomonas reinhardtii][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001542NSK001542Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00690.1NO15G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527383gene_4618Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00690.1NO15G00690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00690 ID=NO15G00690|Name=NO15G00690|organism=Nannochloropsis oceanica|type=gene|length=2384bp
ATGGAGAACACCAAGCCGACGAAACAGAGTACCAAAAGTAGAATGAGAAG
AGTGTTACCAGGACAGGGGCGTCCGCGGCTTTATGGTGCCGTTCTACTCT
GCCTCGCCTCAGCAGCACGCGTGGgtgcctttcactcatcagcttccccc
ccccccggagtcatcagcaccaccaacttcctttatacgcctcagTGAGT
GGTAGCGGCAGCAGTAGCAGCAGCAACAAAAAGAAATTATCGCCATCAGC
ATCTCAGTCACCGCAAGCACCGTCGTCGGTCAGCGGCAAACGCAGCAGCC
CGCCATCAACACCCCCACCGTTGCCTACCAAAGCAGCCGGCGGCAAGAGA
CCTCCCTCCCCCTCCTCCTCGTCTTCCTCCTCCTCTCCAAAATCCGAACG
CTCTTTCTCTCAATCATATCCACCATCCAAAAAGAAACCATTAAAACCCA
AAGCCCGTCTCGGCACCGATTGGGCCTGGTCGGTCTCCCCCAAACGCAGC
CTCCCTCCCCTCTCCACCCCCTACCCCTCCCTCCCCCTTCCCCAACTCCT
GGCCTGGGAACGCGACGGCCACACACTCACCAAAGGCCTTTGTTCCCCCG
ACGAAATGGGTGATTACGTCAAAATCGTGCGTGCTGCCTTTGAGAAAGAG
AAGCTTTCGGCGTTGCGGCAAAAGATAAGGGTGATGCTAGGGCAAGAAGC
GTACAATGATTGTCAGACCATCGAGGAATGCGAGGAGGTGATGGATGAAT
TCATCGACCAGGACATGATCCCTTTCTTGCAGACCTTTAATGCGTGGAGA
AAATACCAAGATGTGAGGCAATTGGTCTTGGCGAAGAGGTTCGCAGGGGT
GGCGGCACAGCTGTTGAATgtaagaggtggaggatagggagggagggaag
gggagggacggaaggcggaagagtcgtcttgtcctatgtacctaaccatt
gagtatccatctgtttctttctttcccaaccctcctacacacacccaaac
acgcagGCGCCCCGTGTTCGTCTCTATCAAGATTCAACCTTCTTAAAGCG
CTGTGGCGACGGTCCAACACTCTGGCACTCCGACTTGAACATGGCTCCCT
TTCACACCAACGATGCCGTGACATTATGGTTACCCCTCACGCCCATCGCC
CCGGAGGAAGAAGGAGGGACGGGTCTGTTGTTCGCCTCCAGGTCGCACCG
GGATTTTGCCCTATCATTTTGGGAGGATGCCAAGGGGGGAGGGAGGCGAG
ACCTCGAGGGGAGGTATGAGCTGAAGGGCTATGGGCGGATGGAGGTGGGG
GATGGAAGCTGGCATCATGGCTGGTGCTTGCATTCGTCGGGGCCAAACGA
CGAGGACGAGGACCGAGTGGCTCTCAGCCTTTGTTTCGTGGCGGACGGCG
TGGAGATGCTTAATGTGGGGGAGGAGGGGAAGGGGAGGGGTCCGGACGAT
GAGGACGAGGAAAGCTATCGGGATTGGGTGGGAGAGGTGGGGGCGAGGGT
GGGGGAGAGGGAGCATGTCTTTTTGCCCTTGGTTTGGGACGAGGCGTTGG
AGAGGGAGGGGAGAGAAGGAGGGGGAGGGGGAGGGGGAAAGAAGTGAGGG
GGAGGGAGTGGAGGAAAACCGAGAGTATTTTTTTTTGGAAGGGATCAAAT
GAAAGGAAAGAGGAGGTTTGTAAACATGTAGGGCGGAAATAGTTAATGAA
AGCACGTATATGAGAGACAGGATTAGTTTCCTGGTCAAGCTCACGCCCAG
CCGTGGGATTGATCCTCACCCAAAGAGCAGTGCGGCTGGCTCCTTGAACA
AGTTACTCACTCACCAATCGGTGTTTATCGATCGTCTTACGCCCACACGA
CACGGGGAGGGCTTGTCTTCCGGACTTGCACGAGAGGCACAGGGAGGGGG
GTTCAGCTCAAGACCTATTTTCTACAGGTCTCGGTCTCAAACGTACTTGC
TCACTCTCTCACGGCTATTCCCTTTTTGTGATTCTCTAGTCTATTGACCA
TCGGGGTGGTGGTATGACCCCTCCCTCTTGTCATTTTTATCTCTCTCCCT
CATTACTCTTCTCCTTCTCTGTCTTTTCCTTCTTTTTCTTCTTACCTTCC
TCTCGCTAGTCATTGTCTTCTTCTGTCTGCTCACCTTCCTCATTTGCTGT
CTTCCGATATCCTTCCTTCCTTCCTTCATTCATGGAGACATGCCTCTTTT
TCACTCTCCAACACATGAAGGCACGCCTTTGTCTCATTCCCTAATTCCCT
CCTGCATTCTTACCCGAGTTCACCACACTGCTGCTATTACGCCAGCGACA
GCAATGCCACCACGGCCACACTGCACCAGCGCAACCTTTCCCTATCACAC
CAAAAAAGAGAGCACATCCCACCCCCTCCCTCTT
back to top

protein sequence of NO15G00690.1

>NO15G00690.1-protein ID=NO15G00690.1-protein|Name=NO15G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MENTKPTKQSTKSRMRRVLPGQGRPRLYGAVLLCLASAARVVSGSGSSSS
SNKKKLSPSASQSPQAPSSVSGKRSSPPSTPPPLPTKAAGGKRPPSPSSS
SSSSSPKSERSFSQSYPPSKKKPLKPKARLGTDWAWSVSPKRSLPPLSTP
YPSLPLPQLLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQ
KIRVMLGQEAYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQ
LVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHT
NDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLE
GRYELKGYGRMEVGDGSWHHGWCLHSSGPNDEDEDRVALSLCFVADGVEM
LNVGEEGKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVWDEALERE
GREGGGGGGGKK*
back to top
Synonyms
Publications