NO15G00690.1, NO15G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00690.1
Unique NameNO15G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2176
Alignment locationchr15:225525..227908 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:225525..227908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00690.1 vs.
Match: EWM20072.1 (Phytanoyl-CoA dioxygenase, partial [Nannochloropsis gaditana])

HSP 1 Score: 331.6 bits (849), Expect = 3.800e-87
Identity = 156/194 (80.41%), Postives = 169/194 (87.11%), Query Frame = 0 
Query:  268 PRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLEGRYELKGYGRMEVGDGSWHHGWCLHSSGPNDEDEDRVALSLCFVADGVEMLNVGEE--GKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVWDEAL-EREGREGGGGG 459
            PRVRLYQDSTFLKR GDGPTLWHSDL+MAPFHTN+AVT+WLPLTPI PE+EGGTGLLFAS SHRDFALSFWEDAKGGGRRDLEGRY L  YGRMEVGD +WHHGWCLHSSGPND +EDR+A +LCFVADG EML  GE   G GRGPDDEDEESYRDW G+VG RVGE+EHV+LPLVWDEA    + R+ GG G
Sbjct:   16 PRVRLYQDSTFLKRVGDGPTLWHSDLSMAPFHTNEAVTMWLPLTPIPPEDEGGTGLLFASGSHRDFALSFWEDAKGGGRRDLEGRYALDSYGRMEVGDATWHHGWCLHSSGPNDLEEDRMAFTLCFVADGAEMLEGGEGKLGGGRGPDDEDEESYRDWRGKVGRRVGEKEHVYLPLVWDEAWGSTDTRQKGGTG 209
The following BLAST results are available for this feature:
BLAST of NO15G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20072.13.800e-8780.41Phytanoyl-CoA dioxygenase, partial [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00690NO15G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00690.1NO15G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00690.1.cds1NO15G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00690.1.cds2NO15G00690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00690.1.cds3NO15G00690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00690.1 ID=NO15G00690.1|Name=NO15G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp
ATGGAGAACACCAAGCCGACGAAACAGAGTACCAAAAGTAGAATGAGAAG
AGTGTTACCAGGACAGGGGCGTCCGCGGCTTTATGGTGCCGTTCTACTCT
GCCTCGCCTCAGCAGCACGCGTGGTGAGTGGTAGCGGCAGCAGTAGCAGC
AGCAACAAAAAGAAATTATCGCCATCAGCATCTCAGTCACCGCAAGCACC
GTCGTCGGTCAGCGGCAAACGCAGCAGCCCGCCATCAACACCCCCACCGT
TGCCTACCAAAGCAGCCGGCGGCAAGAGACCTCCCTCCCCCTCCTCCTCG
TCTTCCTCCTCCTCTCCAAAATCCGAACGCTCTTTCTCTCAATCATATCC
ACCATCCAAAAAGAAACCATTAAAACCCAAAGCCCGTCTCGGCACCGATT
GGGCCTGGTCGGTCTCCCCCAAACGCAGCCTCCCTCCCCTCTCCACCCCC
TACCCCTCCCTCCCCCTTCCCCAACTCCTGGCCTGGGAACGCGACGGCCA
CACACTCACCAAAGGCCTTTGTTCCCCCGACGAAATGGGTGATTACGTCA
AAATCGTGCGTGCTGCCTTTGAGAAAGAGAAGCTTTCGGCGTTGCGGCAA
AAGATAAGGGTGATGCTAGGGCAAGAAGCGTACAATGATTGTCAGACCAT
CGAGGAATGCGAGGAGGTGATGGATGAATTCATCGACCAGGACATGATCC
CTTTCTTGCAGACCTTTAATGCGTGGAGAAAATACCAAGATGTGAGGCAA
TTGGTCTTGGCGAAGAGGTTCGCAGGGGTGGCGGCACAGCTGTTGAATGC
GCCCCGTGTTCGTCTCTATCAAGATTCAACCTTCTTAAAGCGCTGTGGCG
ACGGTCCAACACTCTGGCACTCCGACTTGAACATGGCTCCCTTTCACACC
AACGATGCCGTGACATTATGGTTACCCCTCACGCCCATCGCCCCGGAGGA
AGAAGGAGGGACGGGTCTGTTGTTCGCCTCCAGGTCGCACCGGGATTTTG
CCCTATCATTTTGGGAGGATGCCAAGGGGGGAGGGAGGCGAGACCTCGAG
GGGAGGTATGAGCTGAAGGGCTATGGGCGGATGGAGGTGGGGGATGGAAG
CTGGCATCATGGCTGGTGCTTGCATTCGTCGGGGCCAAACGACGAGGACG
AGGACCGAGTGGCTCTCAGCCTTTGTTTCGTGGCGGACGGCGTGGAGATG
CTTAATGTGGGGGAGGAGGGGAAGGGGAGGGGTCCGGACGATGAGGACGA
GGAAAGCTATCGGGATTGGGTGGGAGAGGTGGGGGCGAGGGTGGGGGAGA
GGGAGCATGTCTTTTTGCCCTTGGTTTGGGACGAGGCGTTGGAGAGGGAG
GGGAGAGAAGGAGGGGGAGGGGGAGGGGGAAAGAAGTGAGGGGGAGGGAG
TGGAGGAAAACCGAGAGTATTTTTTTTTGGAAGGGATCAAATGAAAGGAA
AGAGGAGGTTTGTAAACATGTAGGGCGGAAATAGTTAATGAAAGCACGTA
TATGAGAGACAGGATTAGTTTCCTGGTCAAGCTCACGCCCAGCCGTGGGA
TTGATCCTCACCCAAAGAGCAGTGCGGCTGGCTCCTTGAACAAGTTACTC
ACTCACCAATCGGTGTTTATCGATCGTCTTACGCCCACACGACACGGGGA
GGGCTTGTCTTCCGGACTTGCACGAGAGGCACAGGGAGGGGGGTTCAGCT
CAAGACCTATTTTCTACAGGTCTCGGTCTCAAACGTACTTGCTCACTCTC
TCACGGCTATTCCCTTTTTGTGATTCTCTAGTCTATTGACCATCGGGGTG
GTGGTATGACCCCTCCCTCTTGTCATTTTTATCTCTCTCCCTCATTACTC
TTCTCCTTCTCTGTCTTTTCCTTCTTTTTCTTCTTACCTTCCTCTCGCTA
GTCATTGTCTTCTTCTGTCTGCTCACCTTCCTCATTTGCTGTCTTCCGAT
ATCCTTCCTTCCTTCCTTCATTCATGGAGACATGCCTCTTTTTCACTCTC
CAACACATGAAGGCACGCCTTTGTCTCATTCCCTAATTCCCTCCTGCATT
CTTACCCGAGTTCACCACACTGCTGCTATTACGCCAGCGACAGCAATGCC
ACCACGGCCACACTGCACCAGCGCAACCTTTCCCTATCACACCAAAAAAG
AGAGCACATCCCACCCCCTCCCTCTT
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protein sequence of NO15G00690.1

>NO15G00690.1-protein ID=NO15G00690.1-protein|Name=NO15G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MENTKPTKQSTKSRMRRVLPGQGRPRLYGAVLLCLASAARVVSGSGSSSS
SNKKKLSPSASQSPQAPSSVSGKRSSPPSTPPPLPTKAAGGKRPPSPSSS
SSSSSPKSERSFSQSYPPSKKKPLKPKARLGTDWAWSVSPKRSLPPLSTP
YPSLPLPQLLAWERDGHTLTKGLCSPDEMGDYVKIVRAAFEKEKLSALRQ
KIRVMLGQEAYNDCQTIEECEEVMDEFIDQDMIPFLQTFNAWRKYQDVRQ
LVLAKRFAGVAAQLLNAPRVRLYQDSTFLKRCGDGPTLWHSDLNMAPFHT
NDAVTLWLPLTPIAPEEEGGTGLLFASRSHRDFALSFWEDAKGGGRRDLE
GRYELKGYGRMEVGDGSWHHGWCLHSSGPNDEDEDRVALSLCFVADGVEM
LNVGEEGKGRGPDDEDEESYRDWVGEVGARVGEREHVFLPLVWDEALERE
GREGGGGGGGKK*
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mRNA from alignment at chr15:225525..227908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00690.1 ID=NO15G00690.1|Name=NO15G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp|location=Sequence derived from alignment at chr15:225525..227908+ (Nannochloropsis oceanica)
ATGGAGAACACCAAGCCGACGAAACAGAGTACCAAAAGTAGAATGAGAAG
AGTGTTACCAGGACAGGGGCGTCCGCGGCTTTATGGTGCCGTTCTACTCT
GCCTCGCCTCAGCAGCACGCGTGGGTGCCTTTCACTCATCAGCTTCCCCC
CCCCCCGGAGTCATCAGCACCACCAACTTCCTTTATACGCCTCAGTGAGT
GGTAGCGGCAGCAGTAGCAGCAGCAACAAAAAGAAATTATCGCCATCAGC
ATCTCAGTCACCGCAAGCACCGTCGTCGGTCAGCGGCAAACGCAGCAGCC
CGCCATCAACACCCCCACCGTTGCCTACCAAAGCAGCCGGCGGCAAGAGA
CCTCCCTCCCCCTCCTCCTCGTCTTCCTCCTCCTCTCCAAAATCCGAACG
CTCTTTCTCTCAATCATATCCACCATCCAAAAAGAAACCATTAAAACCCA
AAGCCCGTCTCGGCACCGATTGGGCCTGGTCGGTCTCCCCCAAACGCAGC
CTCCCTCCCCTCTCCACCCCCTACCCCTCCCTCCCCCTTCCCCAACTCCT
GGCCTGGGAACGCGACGGCCACACACTCACCAAAGGCCTTTGTTCCCCCG
ACGAAATGGGTGATTACGTCAAAATCGTGCGTGCTGCCTTTGAGAAAGAG
AAGCTTTCGGCGTTGCGGCAAAAGATAAGGGTGATGCTAGGGCAAGAAGC
GTACAATGATTGTCAGACCATCGAGGAATGCGAGGAGGTGATGGATGAAT
TCATCGACCAGGACATGATCCCTTTCTTGCAGACCTTTAATGCGTGGAGA
AAATACCAAGATGTGAGGCAATTGGTCTTGGCGAAGAGGTTCGCAGGGGT
GGCGGCACAGCTGTTGAATGTAAGAGGTGGAGGATAGGGAGGGAGGGAAG
GGGAGGGACGGAAGGCGGAAGAGTCGTCTTGTCCTATGTACCTAACCATT
GAGTATCCATCTGTTTCTTTCTTTCCCAACCCTCCTACACACACCCAAAC
ACGCAGGCGCCCCGTGTTCGTCTCTATCAAGATTCAACCTTCTTAAAGCG
CTGTGGCGACGGTCCAACACTCTGGCACTCCGACTTGAACATGGCTCCCT
TTCACACCAACGATGCCGTGACATTATGGTTACCCCTCACGCCCATCGCC
CCGGAGGAAGAAGGAGGGACGGGTCTGTTGTTCGCCTCCAGGTCGCACCG
GGATTTTGCCCTATCATTTTGGGAGGATGCCAAGGGGGGAGGGAGGCGAG
ACCTCGAGGGGAGGTATGAGCTGAAGGGCTATGGGCGGATGGAGGTGGGG
GATGGAAGCTGGCATCATGGCTGGTGCTTGCATTCGTCGGGGCCAAACGA
CGAGGACGAGGACCGAGTGGCTCTCAGCCTTTGTTTCGTGGCGGACGGCG
TGGAGATGCTTAATGTGGGGGAGGAGGGGAAGGGGAGGGGTCCGGACGAT
GAGGACGAGGAAAGCTATCGGGATTGGGTGGGAGAGGTGGGGGCGAGGGT
GGGGGAGAGGGAGCATGTCTTTTTGCCCTTGGTTTGGGACGAGGCGTTGG
AGAGGGAGGGGAGAGAAGGAGGGGGAGGGGGAGGGGGAAAGAAGTGAGGG
GGAGGGAGTGGAGGAAAACCGAGAGTATTTTTTTTTGGAAGGGATCAAAT
GAAAGGAAAGAGGAGGTTTGTAAACATGTAGGGCGGAAATAGTTAATGAA
AGCACGTATATGAGAGACAGGATTAGTTTCCTGGTCAAGCTCACGCCCAG
CCGTGGGATTGATCCTCACCCAAAGAGCAGTGCGGCTGGCTCCTTGAACA
AGTTACTCACTCACCAATCGGTGTTTATCGATCGTCTTACGCCCACACGA
CACGGGGAGGGCTTGTCTTCCGGACTTGCACGAGAGGCACAGGGAGGGGG
GTTCAGCTCAAGACCTATTTTCTACAGGTCTCGGTCTCAAACGTACTTGC
TCACTCTCTCACGGCTATTCCCTTTTTGTGATTCTCTAGTCTATTGACCA
TCGGGGTGGTGGTATGACCCCTCCCTCTTGTCATTTTTATCTCTCTCCCT
CATTACTCTTCTCCTTCTCTGTCTTTTCCTTCTTTTTCTTCTTACCTTCC
TCTCGCTAGTCATTGTCTTCTTCTGTCTGCTCACCTTCCTCATTTGCTGT
CTTCCGATATCCTTCCTTCCTTCCTTCATTCATGGAGACATGCCTCTTTT
TCACTCTCCAACACATGAAGGCACGCCTTTGTCTCATTCCCTAATTCCCT
CCTGCATTCTTACCCGAGTTCACCACACTGCTGCTATTACGCCAGCGACA
GCAATGCCACCACGGCCACACTGCACCAGCGCAACCTTTCCCTATCACAC
CAAAAAAGAGAGCACATCCCACCCCCTCCCTCTT
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Coding sequence (CDS) from alignment at chr15:225525..227908+

>NO15G00690.1 ID=NO15G00690.1|Name=NO15G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr15:225525..227908+ (Nannochloropsis oceanica)
ATGGAGAACACCAAGCCGACGAAACAGAGTACCAAAAGTAGAATGAGAAG
AGTGTTACCAGGACAGGGGCGTCCGCGGCTTTATGGTGCCGTTCTACTCT
GCCTCGCCTCAGCAGCACGCGTGGTGAGTGGTAGCGGCAGCAGTAGCAGC
AGCAACAAAAAGAAATTATCGCCATCAGCATCTCAGTCACCGCAAGCACC
GTCGTCGGTCAGCGGCAAACGCAGCAGCCCGCCATCAACACCCCCACCGT
TGCCTACCAAAGCAGCCGGCGGCAAGAGACCTCCCTCCCCCTCCTCCTCG
TCTTCCTCCTCCTCTCCAAAATCCGAACGCTCTTTCTCTCAATCATATCC
ACCATCCAAAAAGAAACCATTAAAACCCAAAGCCCGTCTCGGCACCGATT
GGGCCTGGTCGGTCTCCCCCAAACGCAGCCTCCCTCCCCTCTCCACCCCC
TACCCCTCCCTCCCCCTTCCCCAACTCCTGGCCTGGGAACGCGACGGCCA
CACACTCACCAAAGGCCTTTGTTCCCCCGACGAAATGGGTGATTACGTCA
AAATCGTGCGTGCTGCCTTTGAGAAAGAGAAGCTTTCGGCGTTGCGGCAA
AAGATAAGGGTGATGCTAGGGCAAGAAGCGTACAATGATTGTCAGACCAT
CGAGGAATGCGAGGAGGTGATGGATGAATTCATCGACCAGGACATGATCC
CTTTCTTGCAGACCTTTAATGCGTGGAGAAAATACCAAGATGTGAGGCAA
TTGGTCTTGGCGAAGAGGTTCGCAGGGGTGGCGGCACAGCTGTTGAATGC
GCCCCGTGTTCGTCTCTATCAAGATTCAACCTTCTTAAAGCGCTGTGGCG
ACGGTCCAACACTCTGGCACTCCGACTTGAACATGGCTCCCTTTCACACC
AACGATGCCGTGACATTATGGTTACCCCTCACGCCCATCGCCCCGGAGGA
AGAAGGAGGGACGGGTCTGTTGTTCGCCTCCAGGTCGCACCGGGATTTTG
CCCTATCATTTTGGGAGGATGCCAAGGGGGGAGGGAGGCGAGACCTCGAG
GGGAGGTATGAGCTGAAGGGCTATGGGCGGATGGAGGTGGGGGATGGAAG
CTGGCATCATGGCTGGTGCTTGCATTCGTCGGGGCCAAACGACGAGGACG
AGGACCGAGTGGCTCTCAGCCTTTGTTTCGTGGCGGACGGCGTGGAGATG
CTTAATGTGGGGGAGGAGGGGAAGGGGAGGGGTCCGGACGATGAGGACGA
GGAAAGCTATCGGGATTGGGTGGGAGAGGTGGGGGCGAGGGTGGGGGAGA
GGGAGCATGTCTTTTTGCCCTTGGTTTGGGACGAGGCGTTGGAGAGGGAG
GGGAGAGAAGGAGGGGGAGGGGGAGGGGGAAAGAAGTGA
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Synonyms
Publications