NO15G00600, NO15G00600 (gene) Nannochloropsis oceanica

Overview
NameNO15G00600
Unique NameNO15G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2383
Alignment locationchr15:192200..194582 +

Link to JBrowse

Properties
Property NameValue
Descriptioncold shock domain protein 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:192200..194582 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR011129Cold_shock_prot
IPR002059CSP_DNA-bd
Homology
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: EWM23545.1 (glycine-rich protein [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 1.600e-42
Identity = 93/125 (74.40%), Postives = 106/125 (84.80%), Query Frame = 0 
Query:   71 MLSRLALNLRPTFLTSVSTAARAFSSTTPTVHQGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGRKAINVTGPGGEVLPPRSNSDRPYTPRGEGESSGPRD 196
            MLSRLAL +R +   +V+  A + SSTTPT+HQGTVRAFDSRRGYGFITPEDGS+DVFLHQTQIRRVGFRFV  GE VEFQMVQGDKGR+A+NVT PGGE LPPR+N+DRP   RG G+ SGPR+
Sbjct:    1 MLSRLALTMRSSL--AVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEALPPRNNADRPMGSRG-GDYSGPRE 122
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: EPS74291.1 (hypothetical protein M569_00471, partial [Genlisea aurea])

HSP 1 Score: 87.8 bits (216), Expect = 4.000e-14
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 0 
Query:  101 VHQGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGG 170
            V +GTV+ F+S +G+GFITP+DGS+D+F+HQT I+  GFR +  GE VEF +  GD GR KA NVTGPGG
Sbjct:    3 VKRGTVKWFNSEKGFGFITPDDGSEDLFVHQTAIKSEGFRVLGEGEEVEFVVQHGDDGRPKAGNVTGPGG 72
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: XP_016545560.1 (PREDICTED: glycine-rich protein 2-like [Capsicum annuum])

HSP 1 Score: 87.0 bits (214), Expect = 6.900e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0 
Query:  103 QGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGG 170
            +GTV+ F  ++G+GF+TP+DG DD+F+HQ+ IR  GFR +  GEAVEF +  G+ GR KA+NVTGPGG
Sbjct:    8 KGTVKWFSDQKGFGFVTPDDGGDDLFVHQSGIRSEGFRSLAEGEAVEFDVESGNDGRTKAVNVTGPGG 75
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: PHT36085.1 (Cold shock domain-containing protein 4 [Capsicum baccatum])

HSP 1 Score: 87.0 bits (214), Expect = 6.900e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0 
Query:  103 QGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGG 170
            +GTV+ F  ++G+GF+TP+DG DD+F+HQ+ IR  GFR +  GEAVEF +  G+ GR KA+NVTGPGG
Sbjct:   54 KGTVKWFSDQKGFGFVTPDDGGDDLFVHQSGIRSEGFRSLAEGEAVEFDVESGNDGRTKAVNVTGPGG 121
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: PHT70439.1 (Cold shock domain-containing protein 4 [Capsicum annuum])

HSP 1 Score: 87.0 bits (214), Expect = 6.900e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0 
Query:  103 QGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGG 170
            +GTV+ F  ++G+GF+TP+DG DD+F+HQ+ IR  GFR +  GEAVEF +  G+ GR KA+NVTGPGG
Sbjct:   54 KGTVKWFSDQKGFGFVTPDDGGDDLFVHQSGIRSEGFRSLAEGEAVEFDVESGNDGRTKAVNVTGPGG 121
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: PHU04892.1 (Cold shock domain-containing protein 4 [Capsicum chinense])

HSP 1 Score: 87.0 bits (214), Expect = 6.900e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0 
Query:  103 QGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGG 170
            +GTV+ F  ++G+GF+TP+DG DD+F+HQ+ IR  GFR +  GEAVEF +  G+ GR KA+NVTGPGG
Sbjct:    8 KGTVKWFSDQKGFGFVTPDDGGDDLFVHQSGIRSEGFRSLAEGEAVEFDVESGNDGRTKAVNVTGPGG 75
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: GAQ79634.1 (hypothetical protein KFL_000340370, partial [Klebsormidium nitens])

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-13
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 0 
Query:  104 GTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGGEVL--PPRSNSDRPYTPRGEGESSG 193
            GT + F+S +GYG+ITP+DGSDD+F+HQT I   GFR ++ GE VEF +  GD GR KA++VTGPGG  +   PR    R   P G G   G
Sbjct:   10 GTCKWFNSTKGYGYITPDDGSDDLFVHQTSIHADGFRSLKEGEPVEFTVGTGDDGRLKALDVTGPGGAAVQGAPREQM-RDRAPMGGGGGYG 100
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: PKA51048.1 (Cold shock domain-containing protein 3 [Apostasia shenzhenica])

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-13
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 0 
Query:  103 QGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGGE 171
            +GTV+ F+  +G+GFITP+DG +D+F+HQ+ I+  G+R +  GEAVEF + +GD GR KA++VTGPGG+
Sbjct:    9 KGTVKWFNDSKGFGFITPDDGGEDLFVHQSSIKADGYRTLYVGEAVEFVVAEGDDGRTKAVDVTGPGGD 77
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: KXZ45793.1 (hypothetical protein GPECTOR_50g587 [Gonium pectorale])

HSP 1 Score: 84.3 bits (207), Expect = 4.500e-13
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0 
Query:  103 QGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGG 170
            QGTV+ F++ +G+GFITPE G +D+F+HQT I   GFR ++ GEAVEF++  G  GR KA++VTGPGG
Sbjct:    8 QGTVKWFNATKGFGFITPEGGGEDLFVHQTNINSDGFRSLREGEAVEFEVEAGPDGRSKAVSVTGPGG 75
[Close]
BLAST of NO15G00600 vs. NCBI_GenBank
Match: XP_020597872.1 (glycine-rich protein 2-like [Phalaenopsis equestris])

HSP 1 Score: 84.3 bits (207), Expect = 4.500e-13
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 0 
Query:  103 QGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGR-KAINVTGPGGE 171
            +GTV+ F+  +G+GFITP+DG DD+F+HQ+ I+  G+R +  GEAVEF + +G+ GR KA++VTGPGG+
Sbjct:    9 KGTVKWFNEIKGFGFITPDDGGDDLFVHQSSIKSEGYRTLSDGEAVEFAVSEGEDGRTKAVDVTGPGGD 77
The following BLAST results are available for this feature:
BLAST of NO15G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23545.11.600e-4274.40glycine-rich protein [Nannochloropsis gaditana][more]
EPS74291.14.000e-1460.00hypothetical protein M569_00471, partial [Genlisea... [more]
XP_016545560.16.900e-1457.35PREDICTED: glycine-rich protein 2-like [Capsicum a... [more]
PHT36085.16.900e-1457.35Cold shock domain-containing protein 4 [Capsicum b... [more]
PHT70439.16.900e-1457.35Cold shock domain-containing protein 4 [Capsicum a... [more]
PHU04892.16.900e-1457.35Cold shock domain-containing protein 4 [Capsicum c... [more]
GAQ79634.11.200e-1351.09hypothetical protein KFL_000340370, partial [Klebs... [more]
PKA51048.12.000e-1353.62Cold shock domain-containing protein 3 [Apostasia ... [more]
KXZ45793.14.500e-1357.35hypothetical protein GPECTOR_50g587 [Gonium pector... [more]
XP_020597872.14.500e-1353.62glycine-rich protein 2-like [Phalaenopsis equestri... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR040ngnoR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001557NSK001557Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00600.1NO15G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587166gene_4610Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100339g1gene6910Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00600.1NO15G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00600 ID=NO15G00600|Name=NO15G00600|organism=Nannochloropsis oceanica|type=gene|length=2383bp
AGGGGGGGAGGGGGAGGAGGAAAGGGGGGAGTAGGCCGCATTCCAGAGTT
CGGCGAGACCGATGGGGAGGGCAAAAACAGGAAACGTAAACCGGACAAAG
CACCCAAGCGCGAAGCACGCGCCGAGGGCTATTCTTCGGTTTCTGATGGA
GGAGGAGGAGGAGGAGAAGGAGTAGTAGATGCGGAGGGTGACGGTTAGGA
GGATGGCTTCCATGGAGTTGGAAAAAGGGCGGATGCCCATGAGGAGGGTG
GGCCACCAAGCCGCGAAAATGACGAGAGCTGTCCATGCATTTAGTGAGGA
GGTAGAAGAGGAGGAGGAGGAGGTGGTAGTGGGAATTGAAGAGTAGGGTG
TTTGTCGTGCCTTGCTGGTCTTGGCGGCGTCTTCCTCCTTGTCGTCCTCC
TTTCCTTCCTCCTCCTGCTGCCGTGCTAATTGGAAGACACATACATCCTG
CCCCACACTCAATAGCCACATCATCATCCGCGGCACATAAAGTAAAAGCA
TCGCAGGCGGCATCTCCCCTCTTCCTTCTCCTCCCTCTGCTTTGGCTCCA
TCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTTGCCC
TCCGCCGAACAAATACCGGAGCACTGTAAAAGGCAACCCAGCCACAAACC
AAGGACCCACGATCGAGCGCAAGGCATGCTGTGGGTGCCATTCCCAGGGT
AAATAGTGATTTTCACCGAACATCTGAACGGAGGAAGAGGAGGAAGAGGT
AGAGTAGGGGAGGAGGAGCCGGCGGAGGGAGGGGAAGAGATGGCAAGCCC
ATACCTCTTGGCCGCCTTGGAAGAATTCATCAGGATGAATGTAGCCCGGG
GCAAAAATTAAAAGGGCGCGGAGGAGGAGGAGGAAGGCATAGGCCAGACA
CTGCCAATGCCTGGGTGGTTGTGGGAATGGCATCTGTTGTTGTGTCTGTC
GGGGCAAGGAATCGGAGAAGGGTGGGGAGGTCGAAAGTGAACGATGAGGA
CACGAGGAGGAGGGCAAACAATAGCTCGGCAACCACGCATTAAGAGGCAC
CATGTTATCCAGCACCGCCCACAACGCATCTGTGTGCTTACATTCGTCCA
TGGAAGCGAGAGAACAGTCTCTTTTTTTGGGGAAACATGGTTGTCGACCT
TGAGACTTCAGGTGGCAAGCAAGAAACAGCAGCTTGCCTCGGTCGCTCTC
GCAAATGCCTCGTGGGTGGCTGGCCGGTGATGCGTACCTGCTGCCCCTCT
TTGCCCCTCTTTATTGTTCACCACATGCTCCACACTTATGTTACACACGT
CATTCAACCCTTCAGAGCCCCCCTCCACCACCACCACATCACAACCATGC
TTTCTCGGCTAGCCCTCAACCTCCGCCCGACTTTCCTCACCAGCGTAAGC
ACCGCCGCCCGTGCTTTCAGCAGCACCACACCCACCGTCCACCAGGGGAC
AGTACGCGCGTTCGACTCTCGTCGGgtaagttatggtcgtacagaagtat
cggggcgatgggtatgtcgcctctggataggcaaaagtatgtgggtggtg
tggttgtaaaatgatggcccagttggagcgtggaacagaccaaatatctt
gagtggcgactcactctcccactcttcctttctttttgcctctgcacaca
ctgccactctcacagGGCTACGGCTTTATCACGCCCGAGGACGGCTCGGA
CGACGTGTTTCTGCACCAGACTCAGATTAGGCGTGTGGGCTTCAGGTTTG
TCCAGgtaagaggggagggagggcgggagggagggcgggagggtgtgtgt
ggtgacgatgatgcagtgttgggcgctcgagaagctcggaataaagaaga
aaatgggcggagacagtgaagagtgtagagcggtacatgcaagtgggata
tatatcttgtgtgagggaagcacggggatgctaagagggccggagggaaa
gtaaggatggagtgatgcccacggtggccgttggcctttggctcttcacc
cccccctctctcatttcctacaatggttgcatgatatgaatgtctggcgg
taatggtgtgcttgagcgatgtattatacccgaatggtcagtactcaccc
acctcgtccctctctctccctccctccctccctccctccctcccccctcc
ctccctccctccctccgtgccttcctccctccctccattttctcccattc
cacacagGCGGGCGAGGCGGTGGAGTTTCAAATGGTACAGGGCGACAAGG
GCCGCAAGGCGATAAATGTAACAGGCCCAGGTGGCGAGGTGTTGCCTCCT
CGCAGCAATTCGGACCGACCCTACACGCCCCGGGGAGAGGGGGAGTCGTC
TGGTCCGCGGGACTAAGTAAGAGGGGAGGGAGG
back to top

protein sequence of NO15G00600.1

>NO15G00600.1-protein ID=NO15G00600.1-protein|Name=NO15G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MVVDLETSGGKQETAACLGRSRKCLVGGWPVMRTCCPSLPLFIVHHMLHT
YVTHVIQPFRAPLHHHHITTMLSRLALNLRPTFLTSVSTAARAFSSTTPT
VHQGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEF
QMVQGDKGRKAINVTGPGGEVLPPRSNSDRPYTPRGEGESSGPRD*
back to top
Synonyms
Publications