NO15G00600.1, NO15G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00600.1
Unique NameNO15G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1741
Alignment locationchr15:192200..194582 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:192200..194582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00600.1 vs.
Match: EWM23545.1 (glycine-rich protein [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 1.600e-42
Identity = 93/125 (74.40%), Postives = 106/125 (84.80%), Query Frame = 0 
Query:   71 MLSRLALNLRPTFLTSVSTAARAFSSTTPTVHQGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGRKAINVTGPGGEVLPPRSNSDRPYTPRGEGESSGPRD 196
            MLSRLAL +R +   +V+  A + SSTTPT+HQGTVRAFDSRRGYGFITPEDGS+DVFLHQTQIRRVGFRFV  GE VEFQMVQGDKGR+A+NVT PGGE LPPR+N+DRP   RG G+ SGPR+
Sbjct:    1 MLSRLALTMRSSL--AVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEALPPRNNADRPMGSRG-GDYSGPRE 122
The following BLAST results are available for this feature:
BLAST of NO15G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23545.11.600e-4274.40glycine-rich protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00600NO15G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00600.1NO15G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00600.1.cds1NO15G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00600.1.cds2NO15G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00600.1.cds3NO15G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00600.1 ID=NO15G00600.1|Name=NO15G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1741bp
AGGGGGGGAGGGGGAGGAGGAAAGGGGGGAGTAGGCCGCATTCCAGAGTT
CGGCGAGACCGATGGGGAGGGCAAAAACAGGAAACGTAAACCGGACAAAG
CACCCAAGCGCGAAGCACGCGCCGAGGGCTATTCTTCGGTTTCTGATGGA
GGAGGAGGAGGAGGAGAAGGAGTAGTAGATGCGGAGGGTGACGGTTAGGA
GGATGGCTTCCATGGAGTTGGAAAAAGGGCGGATGCCCATGAGGAGGGTG
GGCCACCAAGCCGCGAAAATGACGAGAGCTGTCCATGCATTTAGTGAGGA
GGTAGAAGAGGAGGAGGAGGAGGTGGTAGTGGGAATTGAAGAGTAGGGTG
TTTGTCGTGCCTTGCTGGTCTTGGCGGCGTCTTCCTCCTTGTCGTCCTCC
TTTCCTTCCTCCTCCTGCTGCCGTGCTAATTGGAAGACACATACATCCTG
CCCCACACTCAATAGCCACATCATCATCCGCGGCACATAAAGTAAAAGCA
TCGCAGGCGGCATCTCCCCTCTTCCTTCTCCTCCCTCTGCTTTGGCTCCA
TCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTTGCCC
TCCGCCGAACAAATACCGGAGCACTGTAAAAGGCAACCCAGCCACAAACC
AAGGACCCACGATCGAGCGCAAGGCATGCTGTGGGTGCCATTCCCAGGGT
AAATAGTGATTTTCACCGAACATCTGAACGGAGGAAGAGGAGGAAGAGGT
AGAGTAGGGGAGGAGGAGCCGGCGGAGGGAGGGGAAGAGATGGCAAGCCC
ATACCTCTTGGCCGCCTTGGAAGAATTCATCAGGATGAATGTAGCCCGGG
GCAAAAATTAAAAGGGCGCGGAGGAGGAGGAGGAAGGCATAGGCCAGACA
CTGCCAATGCCTGGGTGGTTGTGGGAATGGCATCTGTTGTTGTGTCTGTC
GGGGCAAGGAATCGGAGAAGGGTGGGGAGGTCGAAAGTGAACGATGAGGA
CACGAGGAGGAGGGCAAACAATAGCTCGGCAACCACGCATTAAGAGGCAC
CATGTTATCCAGCACCGCCCACAACGCATCTGTGTGCTTACATTCGTCCA
TGGAAGCGAGAGAACAGTCTCTTTTTTTGGGGAAACATGGTTGTCGACCT
TGAGACTTCAGGTGGCAAGCAAGAAACAGCAGCTTGCCTCGGTCGCTCTC
GCAAATGCCTCGTGGGTGGCTGGCCGGTGATGCGTACCTGCTGCCCCTCT
TTGCCCCTCTTTATTGTTCACCACATGCTCCACACTTATGTTACACACGT
CATTCAACCCTTCAGAGCCCCCCTCCACCACCACCACATCACAACCATGC
TTTCTCGGCTAGCCCTCAACCTCCGCCCGACTTTCCTCACCAGCGTAAGC
ACCGCCGCCCGTGCTTTCAGCAGCACCACACCCACCGTCCACCAGGGGAC
AGTACGCGCGTTCGACTCTCGTCGGGGCTACGGCTTTATCACGCCCGAGG
ACGGCTCGGACGACGTGTTTCTGCACCAGACTCAGATTAGGCGTGTGGGC
TTCAGGTTTGTCCAGGCGGGCGAGGCGGTGGAGTTTCAAATGGTACAGGG
CGACAAGGGCCGCAAGGCGATAAATGTAACAGGCCCAGGTGGCGAGGTGT
TGCCTCCTCGCAGCAATTCGGACCGACCCTACACGCCCCGGGGAGAGGGG
GAGTCGTCTGGTCCGCGGGACTAAGTAAGAGGGGAGGGAGG
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protein sequence of NO15G00600.1

>NO15G00600.1-protein ID=NO15G00600.1-protein|Name=NO15G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MVVDLETSGGKQETAACLGRSRKCLVGGWPVMRTCCPSLPLFIVHHMLHT
YVTHVIQPFRAPLHHHHITTMLSRLALNLRPTFLTSVSTAARAFSSTTPT
VHQGTVRAFDSRRGYGFITPEDGSDDVFLHQTQIRRVGFRFVQAGEAVEF
QMVQGDKGRKAINVTGPGGEVLPPRSNSDRPYTPRGEGESSGPRD*
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mRNA from alignment at chr15:192200..194582+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00600.1 ID=NO15G00600.1|Name=NO15G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at chr15:192200..194582+ (Nannochloropsis oceanica)
AGGGGGGGAGGGGGAGGAGGAAAGGGGGGAGTAGGCCGCATTCCAGAGTT
CGGCGAGACCGATGGGGAGGGCAAAAACAGGAAACGTAAACCGGACAAAG
CACCCAAGCGCGAAGCACGCGCCGAGGGCTATTCTTCGGTTTCTGATGGA
GGAGGAGGAGGAGGAGAAGGAGTAGTAGATGCGGAGGGTGACGGTTAGGA
GGATGGCTTCCATGGAGTTGGAAAAAGGGCGGATGCCCATGAGGAGGGTG
GGCCACCAAGCCGCGAAAATGACGAGAGCTGTCCATGCATTTAGTGAGGA
GGTAGAAGAGGAGGAGGAGGAGGTGGTAGTGGGAATTGAAGAGTAGGGTG
TTTGTCGTGCCTTGCTGGTCTTGGCGGCGTCTTCCTCCTTGTCGTCCTCC
TTTCCTTCCTCCTCCTGCTGCCGTGCTAATTGGAAGACACATACATCCTG
CCCCACACTCAATAGCCACATCATCATCCGCGGCACATAAAGTAAAAGCA
TCGCAGGCGGCATCTCCCCTCTTCCTTCTCCTCCCTCTGCTTTGGCTCCA
TCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTTGCCC
TCCGCCGAACAAATACCGGAGCACTGTAAAAGGCAACCCAGCCACAAACC
AAGGACCCACGATCGAGCGCAAGGCATGCTGTGGGTGCCATTCCCAGGGT
AAATAGTGATTTTCACCGAACATCTGAACGGAGGAAGAGGAGGAAGAGGT
AGAGTAGGGGAGGAGGAGCCGGCGGAGGGAGGGGAAGAGATGGCAAGCCC
ATACCTCTTGGCCGCCTTGGAAGAATTCATCAGGATGAATGTAGCCCGGG
GCAAAAATTAAAAGGGCGCGGAGGAGGAGGAGGAAGGCATAGGCCAGACA
CTGCCAATGCCTGGGTGGTTGTGGGAATGGCATCTGTTGTTGTGTCTGTC
GGGGCAAGGAATCGGAGAAGGGTGGGGAGGTCGAAAGTGAACGATGAGGA
CACGAGGAGGAGGGCAAACAATAGCTCGGCAACCACGCATTAAGAGGCAC
CATGTTATCCAGCACCGCCCACAACGCATCTGTGTGCTTACATTCGTCCA
TGGAAGCGAGAGAACAGTCTCTTTTTTTGGGGAAACATGGTTGTCGACCT
TGAGACTTCAGGTGGCAAGCAAGAAACAGCAGCTTGCCTCGGTCGCTCTC
GCAAATGCCTCGTGGGTGGCTGGCCGGTGATGCGTACCTGCTGCCCCTCT
TTGCCCCTCTTTATTGTTCACCACATGCTCCACACTTATGTTACACACGT
CATTCAACCCTTCAGAGCCCCCCTCCACCACCACCACATCACAACCATGC
TTTCTCGGCTAGCCCTCAACCTCCGCCCGACTTTCCTCACCAGCGTAAGC
ACCGCCGCCCGTGCTTTCAGCAGCACCACACCCACCGTCCACCAGGGGAC
AGTACGCGCGTTCGACTCTCGTCGGGTAAGTTATGGTCGTACAGAAGTAT
CGGGGCGATGGGTATGTCGCCTCTGGATAGGCAAAAGTATGTGGGTGGTG
TGGTTGTAAAATGATGGCCCAGTTGGAGCGTGGAACAGACCAAATATCTT
GAGTGGCGACTCACTCTCCCACTCTTCCTTTCTTTTTGCCTCTGCACACA
CTGCCACTCTCACAGGGCTACGGCTTTATCACGCCCGAGGACGGCTCGGA
CGACGTGTTTCTGCACCAGACTCAGATTAGGCGTGTGGGCTTCAGGTTTG
TCCAGGTAAGAGGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGTGTGTGT
GGTGACGATGATGCAGTGTTGGGCGCTCGAGAAGCTCGGAATAAAGAAGA
AAATGGGCGGAGACAGTGAAGAGTGTAGAGCGGTACATGCAAGTGGGATA
TATATCTTGTGTGAGGGAAGCACGGGGATGCTAAGAGGGCCGGAGGGAAA
GTAAGGATGGAGTGATGCCCACGGTGGCCGTTGGCCTTTGGCTCTTCACC
CCCCCCTCTCTCATTTCCTACAATGGTTGCATGATATGAATGTCTGGCGG
TAATGGTGTGCTTGAGCGATGTATTATACCCGAATGGTCAGTACTCACCC
ACCTCGTCCCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCC
CTCCCTCCCTCCCTCCGTGCCTTCCTCCCTCCCTCCATTTTCTCCCATTC
CACACAGGCGGGCGAGGCGGTGGAGTTTCAAATGGTACAGGGCGACAAGG
GCCGCAAGGCGATAAATGTAACAGGCCCAGGTGGCGAGGTGTTGCCTCCT
CGCAGCAATTCGGACCGACCCTACACGCCCCGGGGAGAGGGGGAGTCGTC
TGGTCCGCGGGACTAAGTAAGAGGGGAGGGAGG
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Coding sequence (CDS) from alignment at chr15:192200..194582+

>NO15G00600.1 ID=NO15G00600.1|Name=NO15G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at chr15:192200..194582+ (Nannochloropsis oceanica)
ATGGTTGTCGACCTTGAGACTTCAGGTGGCAAGCAAGAAACAGCAGCTTG
CCTCGGTCGCTCTCGCAAATGCCTCGTGGGTGGCTGGCCGGTGATGCGTA
CCTGCTGCCCCTCTTTGCCCCTCTTTATTGTTCACCACATGCTCCACACT
TATGTTACACACGTCATTCAACCCTTCAGAGCCCCCCTCCACCACCACCA
CATCACAACCATGCTTTCTCGGCTAGCCCTCAACCTCCGCCCGACTTTCC
TCACCAGCGTAAGCACCGCCGCCCGTGCTTTCAGCAGCACCACACCCACC
GTCCACCAGGGGACAGTACGCGCGTTCGACTCTCGTCGGGGCTACGGCTT
TATCACGCCCGAGGACGGCTCGGACGACGTGTTTCTGCACCAGACTCAGA
TTAGGCGTGTGGGCTTCAGGTTTGTCCAGGCGGGCGAGGCGGTGGAGTTT
CAAATGGTACAGGGCGACAAGGGCCGCAAGGCGATAAATGTAACAGGCCC
AGGTGGCGAGGTGTTGCCTCCTCGCAGCAATTCGGACCGACCCTACACGC
CCCGGGGAGAGGGGGAGTCGTCTGGTCCGCGGGACTAA
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Synonyms
Publications