NO15G00150, NO15G00150 (gene) Nannochloropsis oceanica

Overview
NameNO15G00150
Unique NameNO15G00150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1423
Alignment locationchr15:34800..36222 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:34800..36222 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0033617mitochondrial respiratory chain complex IV assembly
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR018625Pet100
Homology
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BLAST of NO15G00150 vs. NCBI_GenBank
Match: XP_005855469.1 (hypothetical protein NGA_0139900 [Nannochloropsis gaditana CCMP526] >EKU20898.1 hypothetical protein NGA_0139900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 157.5 bits (397), Expect = 2.400e-35
Identity = 77/111 (69.37%), Postives = 88/111 (79.28%), Query Frame = 0 
Query:    3 ALPPSSRPPGFGGRGNGKLEIFKFCLYVSIPVVASIIYGTPENMQSIVNKFRFVEYPAEDTRGGDVLVGQSISREERAKAVATXXXXXXXXXXXXXXXXE-KKGGWGGLWR 113
            ++PPSSRPP FGG+GNGKLEIFKF LYVSIPV+ASIIYGTP+NMQ+IVNKFR+VEYPAED R GDVLVGQSIS+EERA+A+A                 E KKG WGGLW+
Sbjct:    2 SIPPSSRPPRFGGKGNGKLEIFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDIKSKGDDTAAETKKGKWGGLWK 112
[Close]
BLAST of NO15G00150 vs. NCBI_GenBank
Match: EWM20818.1 (hypothetical protein Naga_100519g4 [Nannochloropsis gaditana])

HSP 1 Score: 156.4 bits (394), Expect = 5.400e-35
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 0 
Query:    3 ALPPSSRPPGFGGRGNGKLEIFKFCLYVSIPVVASIIYGTPENMQSIVNKFRFVEYPAEDTRGGDVLVGQSISREERAKAVATXXXXXXXXXXXXXXXXE-KKGGWGGLWR 113
            ++PPSSRPP FGG+GNGKLE+FKF LYVSIPV+ASIIYGTP+NMQ+IVNKFR+VEYPAED R GDVLVGQSIS+EERA+A+A                 E KKG WGGLW+
Sbjct:    2 SIPPSSRPPRFGGKGNGKLEMFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDTKSKGDDTAAETKKGKWGGLWK 112
The following BLAST results are available for this feature:
BLAST of NO15G00150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855469.12.400e-3569.37hypothetical protein NGA_0139900 [Nannochloropsis ... [more]
EWM20818.15.400e-3568.47hypothetical protein Naga_100519g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL149nonsL149Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008568NSK008568Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00150.1NO15G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629836gene_4568Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100519g4gene9593Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00150.1NO15G00150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00150 ID=NO15G00150|Name=NO15G00150|organism=Nannochloropsis oceanica|type=gene|length=1423bp
ACAGAGATAGAAGCGATGGCGGCGTCTATTTTTCTTTTTCGTGACGGCGA
GGAAGACGCGTTATCAGCGCTTGTATGAGTCAGAGGACTGTCTTTTACTC
CTACTCGTGGTGGTGGTAGCGGTGGTGGTGGTGCTTGTGGCGTGGAGGAA
GGAGGCAGCAACAGCTTTCCGTGATCGGCCAGGCGGTCGATCGCGGGGAG
GAGGAGAGAGGAGAGGGCAAGGAGGGTCATGCTAGCCCAGGCAAGGGGGA
GGAGGAGGTGGACGTGGGGCAGGAGGGTAAATAGTATATCCATGTCCTGC
GTGGGTGCGTATGTATGTATTATCAAGCGGGTCGTAAGGGGTGACTATGG
ACGCGCTGCTTTGCATCGCCGCTTATGCTCCTTCTTCATTATGACGCTGA
TTGAGTCATACACTCACATATGTGCCCTCGCTGCCTCTTAATGTGCCACT
CTTGTACGTGCTTGTAAAGCGCGAAGTGTACGCGCGCGTCTATGTGCAGG
CTGCAAGGAGCAAGGGGGTGTTGTCGAGACCCGCTCGCGTCACACACAAG
CGCACTCATCACCCAACCCACTCTCATCACTTCCCATTCCCCACGCACGT
GCGACCGGGCGCCCCCAAGCCAGCACAATGTCTGCACTGCCACCATCGTC
ACGCCCTCCTGGGTTTGGCGGTCGGGGCAACGGCAAGCTAGAGATCTTCA
AATTCTGCCTTTATGTCTCGAgtacgtacgggagggaggggacgaaaggg
aacagggaagggagggagtaaaagggaagaaagagaaggggagggaaact
cctgcgttccttgcgatcaggtgggcgctccaccggttgctgcatcatgc
cttcatgtgtttgctattctggcgcttgagtgcggtagcttaccgtcaca
atggcctttagccctctcctcttgcctcagatgagggtaagactgggtat
ctcatgctgatacacacgctgcactgcttctccttatgtcccgaccgatt
ttgatggaatggcctcacatgcatccacatatcatcttgcacaccagcat
tcttactcttggtcctcctttgtccttcttcgctcacgctcccatgcctt
cccgctcctgctctccctccctcccaaccggtttcctttcacagTTCCCG
TTGTCGCCTCGATCATCTATGGCACGCCCGAGAATATGCAGAGCATCGTC
AATAAGTTTCGTTTTGTGGAGTACCCAGCCGAAGATACTCGGGGAGGGGA
TGTGCTGGTTGGTCAGAGCATCAGTCGCGAGGAGAGAGCAAAGGCCGTAG
CGACAGCAGCGGCAGGGAGGGAAGCTGGGAAAGAGGAAGGGCAGCTACAG
GCGGAGAAAAAGGGAGGGTGGGGAGGGCTCTGGCGGAAGTGAAGAAACAA
AAGTAAAGACGTCTATCAGCGGA
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protein sequence of NO15G00150.1

>NO15G00150.1-protein ID=NO15G00150.1-protein|Name=NO15G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MSALPPSSRPPGFGGRGNGKLEIFKFCLYVSIPVVASIIYGTPENMQSIV
NKFRFVEYPAEDTRGGDVLVGQSISREERAKAVATAAAGREAGKEEGQLQ
AEKKGGWGGLWRK*
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Synonyms
Publications