NO15G00150.1, NO15G00150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00150.1
Unique NameNO15G00150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1000
Alignment locationchr15:34800..36222 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:34800..36222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00150.1 vs.
Match: XP_005855469.1 (hypothetical protein NGA_0139900 [Nannochloropsis gaditana CCMP526]; EKU20898.1 hypothetical protein NGA_0139900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.4 bits (394), Expect = 5.400e-35
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 0 
Query:    3 ALPPSSRPPGFGGRGNGKLEIFKFCLYVSIPVVASIIYGTPENMQSIVNKFRFVEYPAEDTRGGDVLVGQSISREERAKAVATAAAGREAGKEEGQLQAE-KKGGWGGLWR 113
            ++PPSSRPP FGG+GNGKLEIFKF LYVSIPV+ASIIYGTP+NMQ+IVNKFR+VEYPAED R GDVLVGQSIS+EERA+A+A      +   +     AE KKG WGGLW+
Sbjct:    2 SIPPSSRPPRFGGKGNGKLEIFKFGLYVSIPVIASIIYGTPDNMQNIVNKFRYVEYPAEDNRDGDVLVGQSISKEERARAMAALEKKEDIKSKGDDTAAETKKGKWGGLWK 112
The following BLAST results are available for this feature:
BLAST of NO15G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855469.15.400e-3570.27hypothetical protein NGA_0139900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00150NO15G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00150.1NO15G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00150.1.cds1NO15G00150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00150.1.cds2NO15G00150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00150.1 ID=NO15G00150.1|Name=NO15G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp
ACAGAGATAGAAGCGATGGCGGCGTCTATTTTTCTTTTTCGTGACGGCGA
GGAAGACGCGTTATCAGCGCTTGTATGAGTCAGAGGACTGTCTTTTACTC
CTACTCGTGGTGGTGGTAGCGGTGGTGGTGGTGCTTGTGGCGTGGAGGAA
GGAGGCAGCAACAGCTTTCCGTGATCGGCCAGGCGGTCGATCGCGGGGAG
GAGGAGAGAGGAGAGGGCAAGGAGGGTCATGCTAGCCCAGGCAAGGGGGA
GGAGGAGGTGGACGTGGGGCAGGAGGGTAAATAGTATATCCATGTCCTGC
GTGGGTGCGTATGTATGTATTATCAAGCGGGTCGTAAGGGGTGACTATGG
ACGCGCTGCTTTGCATCGCCGCTTATGCTCCTTCTTCATTATGACGCTGA
TTGAGTCATACACTCACATATGTGCCCTCGCTGCCTCTTAATGTGCCACT
CTTGTACGTGCTTGTAAAGCGCGAAGTGTACGCGCGCGTCTATGTGCAGG
CTGCAAGGAGCAAGGGGGTGTTGTCGAGACCCGCTCGCGTCACACACAAG
CGCACTCATCACCCAACCCACTCTCATCACTTCCCATTCCCCACGCACGT
GCGACCGGGCGCCCCCAAGCCAGCACAATGTCTGCACTGCCACCATCGTC
ACGCCCTCCTGGGTTTGGCGGTCGGGGCAACGGCAAGCTAGAGATCTTCA
AATTCTGCCTTTATGTCTCGATTCCCGTTGTCGCCTCGATCATCTATGGC
ACGCCCGAGAATATGCAGAGCATCGTCAATAAGTTTCGTTTTGTGGAGTA
CCCAGCCGAAGATACTCGGGGAGGGGATGTGCTGGTTGGTCAGAGCATCA
GTCGCGAGGAGAGAGCAAAGGCCGTAGCGACAGCAGCGGCAGGGAGGGAA
GCTGGGAAAGAGGAAGGGCAGCTACAGGCGGAGAAAAAGGGAGGGTGGGG
AGGGCTCTGGCGGAAGTGAAGAAACAAAAGTAAAGACGTCTATCAGCGGA
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protein sequence of NO15G00150.1

>NO15G00150.1-protein ID=NO15G00150.1-protein|Name=NO15G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MSALPPSSRPPGFGGRGNGKLEIFKFCLYVSIPVVASIIYGTPENMQSIV
NKFRFVEYPAEDTRGGDVLVGQSISREERAKAVATAAAGREAGKEEGQLQ
AEKKGGWGGLWRK*
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mRNA from alignment at chr15:34800..36222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00150.1 ID=NO15G00150.1|Name=NO15G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1423bp|location=Sequence derived from alignment at chr15:34800..36222+ (Nannochloropsis oceanica)
ACAGAGATAGAAGCGATGGCGGCGTCTATTTTTCTTTTTCGTGACGGCGA
GGAAGACGCGTTATCAGCGCTTGTATGAGTCAGAGGACTGTCTTTTACTC
CTACTCGTGGTGGTGGTAGCGGTGGTGGTGGTGCTTGTGGCGTGGAGGAA
GGAGGCAGCAACAGCTTTCCGTGATCGGCCAGGCGGTCGATCGCGGGGAG
GAGGAGAGAGGAGAGGGCAAGGAGGGTCATGCTAGCCCAGGCAAGGGGGA
GGAGGAGGTGGACGTGGGGCAGGAGGGTAAATAGTATATCCATGTCCTGC
GTGGGTGCGTATGTATGTATTATCAAGCGGGTCGTAAGGGGTGACTATGG
ACGCGCTGCTTTGCATCGCCGCTTATGCTCCTTCTTCATTATGACGCTGA
TTGAGTCATACACTCACATATGTGCCCTCGCTGCCTCTTAATGTGCCACT
CTTGTACGTGCTTGTAAAGCGCGAAGTGTACGCGCGCGTCTATGTGCAGG
CTGCAAGGAGCAAGGGGGTGTTGTCGAGACCCGCTCGCGTCACACACAAG
CGCACTCATCACCCAACCCACTCTCATCACTTCCCATTCCCCACGCACGT
GCGACCGGGCGCCCCCAAGCCAGCACAATGTCTGCACTGCCACCATCGTC
ACGCCCTCCTGGGTTTGGCGGTCGGGGCAACGGCAAGCTAGAGATCTTCA
AATTCTGCCTTTATGTCTCGAGTACGTACGGGAGGGAGGGGACGAAAGGG
AACAGGGAAGGGAGGGAGTAAAAGGGAAGAAAGAGAAGGGGAGGGAAACT
CCTGCGTTCCTTGCGATCAGGTGGGCGCTCCACCGGTTGCTGCATCATGC
CTTCATGTGTTTGCTATTCTGGCGCTTGAGTGCGGTAGCTTACCGTCACA
ATGGCCTTTAGCCCTCTCCTCTTGCCTCAGATGAGGGTAAGACTGGGTAT
CTCATGCTGATACACACGCTGCACTGCTTCTCCTTATGTCCCGACCGATT
TTGATGGAATGGCCTCACATGCATCCACATATCATCTTGCACACCAGCAT
TCTTACTCTTGGTCCTCCTTTGTCCTTCTTCGCTCACGCTCCCATGCCTT
CCCGCTCCTGCTCTCCCTCCCTCCCAACCGGTTTCCTTTCACAGTTCCCG
TTGTCGCCTCGATCATCTATGGCACGCCCGAGAATATGCAGAGCATCGTC
AATAAGTTTCGTTTTGTGGAGTACCCAGCCGAAGATACTCGGGGAGGGGA
TGTGCTGGTTGGTCAGAGCATCAGTCGCGAGGAGAGAGCAAAGGCCGTAG
CGACAGCAGCGGCAGGGAGGGAAGCTGGGAAAGAGGAAGGGCAGCTACAG
GCGGAGAAAAAGGGAGGGTGGGGAGGGCTCTGGCGGAAGTGAAGAAACAA
AAGTAAAGACGTCTATCAGCGGA
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Coding sequence (CDS) from alignment at chr15:34800..36222+

>NO15G00150.1 ID=NO15G00150.1|Name=NO15G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at chr15:34800..36222+ (Nannochloropsis oceanica)
ATGTCTGCACTGCCACCATCGTCACGCCCTCCTGGGTTTGGCGGTCGGGG
CAACGGCAAGCTAGAGATCTTCAAATTCTGCCTTTATGTCTCGATTCCCG
TTGTCGCCTCGATCATCTATGGCACGCCCGAGAATATGCAGAGCATCGTC
AATAAGTTTCGTTTTGTGGAGTACCCAGCCGAAGATACTCGGGGAGGGGA
TGTGCTGGTTGGTCAGAGCATCAGTCGCGAGGAGAGAGCAAAGGCCGTAG
CGACAGCAGCGGCAGGGAGGGAAGCTGGGAAAGAGGAAGGGCAGCTACAG
GCGGAGAAAAAGGGAGGGTGGGGAGGGCTCTGGCGGAAGTGA
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Synonyms
Publications