NO15G00080, NO15G00080 (gene) Nannochloropsis oceanica

Overview
NameNO15G00080
Unique NameNO15G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1919
Alignment locationchr15:16660..18578 -

Link to JBrowse

Properties
Property NameValue
DescriptionBranched-chain amino acid
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:16660..18578 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G00080 vs. NCBI_GenBank
Match: XP_005853730.1 (branched-chain amino acid [Nannochloropsis gaditana CCMP526] >EKU22632.1 branched-chain amino acid [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 78.2 bits (191), Expect = 2.600e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0 
Query:   87 MCYEVTCRGCGNATFGGCGRHVAAVKAEVAQAGRQWCTCDAE 129
            MCYEV C+GCGNAT+ GCGRHV AVKA V QAGR WCTC+A+
Sbjct:    1 MCYEVPCKGCGNATYSGCGRHVDAVKARVLQAGRHWCTCEAK 42
The following BLAST results are available for this feature:
BLAST of NO15G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853730.12.600e-1176.19branched-chain amino acid [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL149nonsL149Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00080.1NO15G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00080.1NO15G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00080 ID=NO15G00080|Name=NO15G00080|organism=Nannochloropsis oceanica|type=gene|length=1919bp
CGATGGTGTTGCTTTGCGCATGGCCGCATCATACTGCGCCTTGGCGGTGT
CAAAAGGTGGGTAGAAAAGGGAAAGGCGGCTTTCCTGACCGAGCAACTTG
AACGTGTTCGTCGGTCCGCTTGGAGGAAAATGGGCCGTTGTGAGCACCAG
GCACGTCTTTTGGAGTGGGAGAGGGTGTCTTGCACTCCTCTTGAGCATAT
TGGGACTCTCCCTGCGGGATTCAGCATGGACATTTTGAAATTTCATGCGC
TCGAGCTTATGTTTGGTGTTGTTGTCGGGCGTTCCCCTTCTCCACTCTCT
CTCTGTCTTGCTCCTCCGGGGGGAGTCCTCCCCAATAATTGCACCACATG
GGACGTGGACGAGTAACCCTACTCCGCCATATTTATCATTTACATCGTCC
CTCGTCTTTACTGATACAGCAGCCACATCCCTCACTCTTTCACCAACAAA
TCACACAGGCCGTCGCCGCAAACAAAGAGAGGCAGCAAAGGGGAAATCAA
CCATGTGCTACGAAGTGACCTGTCGAGGATGCGGGAACGCCACCTTCGGC
GGATGCGGGCGTCACGTCGCCGCGgtacgtctaagagggcacctttttca
ggagataaatctgaatattttatagggaaggtcgctttgcacttcttctg
tcttcgcttgccgtgctggactaatgtgcacgctgcgagcaatggggtca
cattgcttcgtgtatacatgtaccatcgtctaacgcacccaaacatgcat
atacagGTGAAGGCCGAGGTGGCCCAGGCTGGGCGACAGTGGTGTACTTG
TGATGCAGAGAAACCCAAGACAAAACCTTCCATGCCCGCGTCTTCCTCCG
CTGCAGCTTCCGCGACCCCTCCGGTTGCACAGGGCAGCAGCTGTGTGATT
CACTAGACCAAGGAACAAGACACTAAATTCAAGCATGGAAAAGAAAGATG
GAGAGCCGGGAGCTCTAAAGATAACGTAGGAAGCTAGGCTAAAGAGGGAT
TTTGGATAGATGAAATTAGAAAATACATTTGACGCCTAACCCTCGGTGGA
AATTCTTATTTTTTTTCATTTTATTTCCTAACTATCAATTATATGTCGTT
GTCGCTATCACTTTCCTGGGTGCCTTCCCAGAAAGGGAAAGCGTGTGTGC
TGCGTGGAACGAGAAGAATAAATGCTTACTAAATTGTCGAGCCTTGTAAT
TTCTTTCTTGCATCTGTTCGCCTTCTGCTCTCCCTTTCTCCGCCTCTCTC
TTCTCTTCATTCTCCTCCTCTGCCACCTCCTCCGCCTTCTCTCCTCTCCA
TCTTATTTTCACTCTCCTGTCTTCTCTCCTCTCCATCTTATCTTCGCTCC
CTCCCTTGCGCCTCCCTTGCTTACCCTTCACTACACGCTACCCTCCTCCT
CCCTCCCTTCCTCCCTCCCTCCCTCCCTTTCTCATGACACCCCCGCCTAG
GGCCGCACCACCTCGCTCTTGGCTTGTAACGACCGGAAACGGTTCAAGGC
CGCCGCGATTTCAAATCTCCGGGGCTTCGCCAAGTCCCCTACCGCCTGCG
CTTTCCCTGCTTCGATTCTTCCCTGCCCCCCTCCCACCAGCCCGTCTAGT
CCTCCCTCCATCCAGCACTCCATGGCCTCCACGCACTCCCTTACGCTCGT
CGGCTTGGACCCCAGCTTGGCCAGGGCTTGAAAGGCGAAGCCAATCGCCC
GGGTTTGCCCGATCTGGTGAGAGGGAGGAAGGGAGGGAGGGAGGGACAAC
GAGAAGGAGGGAAGGTTATGAGGAGAACGTGGGCTGCAGGGTAACCTAGA
CAGTGTGGCTGTTGATAGCAGACAATGACGTGATGAGCCGTAAGGGATAG
GGAGGCAGCAGGGTAGGGTGGGGGGAAGGAGGAGGAGGGAGGGACGACGG
CTTCATCGCGCCTTACCTC
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protein sequence of NO15G00080.1

>NO15G00080.1-protein ID=NO15G00080.1-protein|Name=NO15G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MRSSLCLVLLSGVPLLHSLSVLLLRGESSPIIAPHGTWTSNPTPPYLSFT
SSLVFTDTAATSLTLSPTNHTGRRRKQREAAKGKSTMCYEVTCRGCGNAT
FGGCGRHVAAVKAEVAQAGRQWCTCDAEKPKTKPSMPASSSAAASATPPV
AQGSSCVIH*
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Synonyms
Publications