NO15G00080.1, NO15G00080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00080.1
Unique NameNO15G00080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1737
Alignment locationchr15:16660..18578 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:16660..18578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00080.1 vs.
Match: XP_005853730.1 (branched-chain amino acid [Nannochloropsis gaditana CCMP526]; EKU22632.1 branched-chain amino acid [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 79.3 bits (194), Expect = 1.200e-11
Identity = 45/85 (52.94%), Postives = 52/85 (61.18%), Query Frame = 0 
Query:   87 MCYEVTCRGCGNATFGGCGRHVAAVKAEVAQAGRQWCTCDAEKPKTKPSMPASSSAAASATPPVAQGSS------------CVIH 160
            MCYEV C+GCGNAT+ GCGRHV AVKA V QAGR WCTC+A K   K S  +S SA  S+    + GS+            CVIH
Sbjct:    1 MCYEVPCKGCGNATYSGCGRHVDAVKARVLQAGRHWCTCEA-KNNMKGSTSSSLSANTSSVNSSSNGSTSTSNSSDPSTNKCVIH 84
The following BLAST results are available for this feature:
BLAST of NO15G00080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853730.11.200e-1152.94branched-chain amino acid [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00080NO15G00080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00080.1NO15G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00080.1.cds1NO15G00080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00080.1.cds2NO15G00080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00080.1 ID=NO15G00080.1|Name=NO15G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
CGATGGTGTTGCTTTGCGCATGGCCGCATCATACTGCGCCTTGGCGGTGT
CAAAAGGTGGGTAGAAAAGGGAAAGGCGGCTTTCCTGACCGAGCAACTTG
AACGTGTTCGTCGGTCCGCTTGGAGGAAAATGGGCCGTTGTGAGCACCAG
GCACGTCTTTTGGAGTGGGAGAGGGTGTCTTGCACTCCTCTTGAGCATAT
TGGGACTCTCCCTGCGGGATTCAGCATGGACATTTTGAAATTTCATGCGC
TCGAGCTTATGTTTGGTGTTGTTGTCGGGCGTTCCCCTTCTCCACTCTCT
CTCTGTCTTGCTCCTCCGGGGGGAGTCCTCCCCAATAATTGCACCACATG
GGACGTGGACGAGTAACCCTACTCCGCCATATTTATCATTTACATCGTCC
CTCGTCTTTACTGATACAGCAGCCACATCCCTCACTCTTTCACCAACAAA
TCACACAGGCCGTCGCCGCAAACAAAGAGAGGCAGCAAAGGGGAAATCAA
CCATGTGCTACGAAGTGACCTGTCGAGGATGCGGGAACGCCACCTTCGGC
GGATGCGGGCGTCACGTCGCCGCGGTGAAGGCCGAGGTGGCCCAGGCTGG
GCGACAGTGGTGTACTTGTGATGCAGAGAAACCCAAGACAAAACCTTCCA
TGCCCGCGTCTTCCTCCGCTGCAGCTTCCGCGACCCCTCCGGTTGCACAG
GGCAGCAGCTGTGTGATTCACTAGACCAAGGAACAAGACACTAAATTCAA
GCATGGAAAAGAAAGATGGAGAGCCGGGAGCTCTAAAGATAACGTAGGAA
GCTAGGCTAAAGAGGGATTTTGGATAGATGAAATTAGAAAATACATTTGA
CGCCTAACCCTCGGTGGAAATTCTTATTTTTTTTCATTTTATTTCCTAAC
TATCAATTATATGTCGTTGTCGCTATCACTTTCCTGGGTGCCTTCCCAGA
AAGGGAAAGCGTGTGTGCTGCGTGGAACGAGAAGAATAAATGCTTACTAA
ATTGTCGAGCCTTGTAATTTCTTTCTTGCATCTGTTCGCCTTCTGCTCTC
CCTTTCTCCGCCTCTCTCTTCTCTTCATTCTCCTCCTCTGCCACCTCCTC
CGCCTTCTCTCCTCTCCATCTTATTTTCACTCTCCTGTCTTCTCTCCTCT
CCATCTTATCTTCGCTCCCTCCCTTGCGCCTCCCTTGCTTACCCTTCACT
ACACGCTACCCTCCTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTTCT
CATGACACCCCCGCCTAGGGCCGCACCACCTCGCTCTTGGCTTGTAACGA
CCGGAAACGGTTCAAGGCCGCCGCGATTTCAAATCTCCGGGGCTTCGCCA
AGTCCCCTACCGCCTGCGCTTTCCCTGCTTCGATTCTTCCCTGCCCCCCT
CCCACCAGCCCGTCTAGTCCTCCCTCCATCCAGCACTCCATGGCCTCCAC
GCACTCCCTTACGCTCGTCGGCTTGGACCCCAGCTTGGCCAGGGCTTGAA
AGGCGAAGCCAATCGCCCGGGTTTGCCCGATCTGGTGAGAGGGAGGAAGG
GAGGGAGGGAGGGACAACGAGAAGGAGGGAAGGTTATGAGGAGAACGTGG
GCTGCAGGGTAACCTAGACAGTGTGGCTGTTGATAGCAGACAATGACGTG
ATGAGCCGTAAGGGATAGGGAGGCAGCAGGGTAGGGTGGGGGGAAGGAGG
AGGAGGGAGGGACGACGGCTTCATCGCGCCTTACCTC
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protein sequence of NO15G00080.1

>NO15G00080.1-protein ID=NO15G00080.1-protein|Name=NO15G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MRSSLCLVLLSGVPLLHSLSVLLLRGESSPIIAPHGTWTSNPTPPYLSFT
SSLVFTDTAATSLTLSPTNHTGRRRKQREAAKGKSTMCYEVTCRGCGNAT
FGGCGRHVAAVKAEVAQAGRQWCTCDAEKPKTKPSMPASSSAAASATPPV
AQGSSCVIH*
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mRNA from alignment at chr15:16660..18578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00080.1 ID=NO15G00080.1|Name=NO15G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1919bp|location=Sequence derived from alignment at chr15:16660..18578- (Nannochloropsis oceanica)
CGATGGTGTTGCTTTGCGCATGGCCGCATCATACTGCGCCTTGGCGGTGT
CAAAAGGTGGGTAGAAAAGGGAAAGGCGGCTTTCCTGACCGAGCAACTTG
AACGTGTTCGTCGGTCCGCTTGGAGGAAAATGGGCCGTTGTGAGCACCAG
GCACGTCTTTTGGAGTGGGAGAGGGTGTCTTGCACTCCTCTTGAGCATAT
TGGGACTCTCCCTGCGGGATTCAGCATGGACATTTTGAAATTTCATGCGC
TCGAGCTTATGTTTGGTGTTGTTGTCGGGCGTTCCCCTTCTCCACTCTCT
CTCTGTCTTGCTCCTCCGGGGGGAGTCCTCCCCAATAATTGCACCACATG
GGACGTGGACGAGTAACCCTACTCCGCCATATTTATCATTTACATCGTCC
CTCGTCTTTACTGATACAGCAGCCACATCCCTCACTCTTTCACCAACAAA
TCACACAGGCCGTCGCCGCAAACAAAGAGAGGCAGCAAAGGGGAAATCAA
CCATGTGCTACGAAGTGACCTGTCGAGGATGCGGGAACGCCACCTTCGGC
GGATGCGGGCGTCACGTCGCCGCGGTACGTCTAAGAGGGCACCTTTTTCA
GGAGATAAATCTGAATATTTTATAGGGAAGGTCGCTTTGCACTTCTTCTG
TCTTCGCTTGCCGTGCTGGACTAATGTGCACGCTGCGAGCAATGGGGTCA
CATTGCTTCGTGTATACATGTACCATCGTCTAACGCACCCAAACATGCAT
ATACAGGTGAAGGCCGAGGTGGCCCAGGCTGGGCGACAGTGGTGTACTTG
TGATGCAGAGAAACCCAAGACAAAACCTTCCATGCCCGCGTCTTCCTCCG
CTGCAGCTTCCGCGACCCCTCCGGTTGCACAGGGCAGCAGCTGTGTGATT
CACTAGACCAAGGAACAAGACACTAAATTCAAGCATGGAAAAGAAAGATG
GAGAGCCGGGAGCTCTAAAGATAACGTAGGAAGCTAGGCTAAAGAGGGAT
TTTGGATAGATGAAATTAGAAAATACATTTGACGCCTAACCCTCGGTGGA
AATTCTTATTTTTTTTCATTTTATTTCCTAACTATCAATTATATGTCGTT
GTCGCTATCACTTTCCTGGGTGCCTTCCCAGAAAGGGAAAGCGTGTGTGC
TGCGTGGAACGAGAAGAATAAATGCTTACTAAATTGTCGAGCCTTGTAAT
TTCTTTCTTGCATCTGTTCGCCTTCTGCTCTCCCTTTCTCCGCCTCTCTC
TTCTCTTCATTCTCCTCCTCTGCCACCTCCTCCGCCTTCTCTCCTCTCCA
TCTTATTTTCACTCTCCTGTCTTCTCTCCTCTCCATCTTATCTTCGCTCC
CTCCCTTGCGCCTCCCTTGCTTACCCTTCACTACACGCTACCCTCCTCCT
CCCTCCCTTCCTCCCTCCCTCCCTCCCTTTCTCATGACACCCCCGCCTAG
GGCCGCACCACCTCGCTCTTGGCTTGTAACGACCGGAAACGGTTCAAGGC
CGCCGCGATTTCAAATCTCCGGGGCTTCGCCAAGTCCCCTACCGCCTGCG
CTTTCCCTGCTTCGATTCTTCCCTGCCCCCCTCCCACCAGCCCGTCTAGT
CCTCCCTCCATCCAGCACTCCATGGCCTCCACGCACTCCCTTACGCTCGT
CGGCTTGGACCCCAGCTTGGCCAGGGCTTGAAAGGCGAAGCCAATCGCCC
GGGTTTGCCCGATCTGGTGAGAGGGAGGAAGGGAGGGAGGGAGGGACAAC
GAGAAGGAGGGAAGGTTATGAGGAGAACGTGGGCTGCAGGGTAACCTAGA
CAGTGTGGCTGTTGATAGCAGACAATGACGTGATGAGCCGTAAGGGATAG
GGAGGCAGCAGGGTAGGGTGGGGGGAAGGAGGAGGAGGGAGGGACGACGG
CTTCATCGCGCCTTACCTC
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Coding sequence (CDS) from alignment at chr15:16660..18578-

>NO15G00080.1 ID=NO15G00080.1|Name=NO15G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at chr15:16660..18578- (Nannochloropsis oceanica)
ATGCGCTCGAGCTTATGTTTGGTGTTGTTGTCGGGCGTTCCCCTTCTCCA
CTCTCTCTCTGTCTTGCTCCTCCGGGGGGAGTCCTCCCCAATAATTGCAC
CACATGGGACGTGGACGAGTAACCCTACTCCGCCATATTTATCATTTACA
TCGTCCCTCGTCTTTACTGATACAGCAGCCACATCCCTCACTCTTTCACC
AACAAATCACACAGGCCGTCGCCGCAAACAAAGAGAGGCAGCAAAGGGGA
AATCAACCATGTGCTACGAAGTGACCTGTCGAGGATGCGGGAACGCCACC
TTCGGCGGATGCGGGCGTCACGTCGCCGCGGTGAAGGCCGAGGTGGCCCA
GGCTGGGCGACAGTGGTGTACTTGTGATGCAGAGAAACCCAAGACAAAAC
CTTCCATGCCCGCGTCTTCCTCCGCTGCAGCTTCCGCGACCCCTCCGGTT
GCACAGGGCAGCAGCTGTGTGATTCACTAG
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Synonyms
Publications