NO15G00040, NO15G00040 (gene) Nannochloropsis oceanica

Overview
NameNO15G00040
Unique NameNO15G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1946
Alignment locationchr15:4896..6841 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:4896..6841 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G00040 vs. NCBI_GenBank
Match: XP_005854382.1 (hypothetical protein NGA_0207500 [Nannochloropsis gaditana CCMP526] >EKU21976.1 hypothetical protein NGA_0207500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 196.4 bits (498), Expect = 7.800e-47
Identity = 95/117 (81.20%), Postives = 109/117 (93.16%), Query Frame = 0 
Query:   74 DEWASTKAKGGDEVRRRLGIVGVKSPLFRIDKAMKAVQEALLDGELGEEVGDPLEFVDASQRVLDGIKNADFLAYSNNFSSYGNGGGGTDFMEESRQALTPALEAYEEMLSILRLSK 191
            +EWASTKAKGGDEVRRRLGIVG KSPLFRIDKA+KAVQ ALL+G+LGE+VGD L+FVDASQRVLDGIKNADFLAYSNNF+S+GNGGG  DFME+S +A+TPALEA+E+M+ ILRL K
Sbjct:   14 EEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDVGDVLDFVDASQRVLDGIKNADFLAYSNNFASFGNGGGALDFMEQSHEAMTPALEAFEDMMDILRLPK 130
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BLAST of NO15G00040 vs. NCBI_GenBank
Match: EWM20833.1 (hypothetical protein Naga_100524g2 [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 1.000e-25
Identity = 70/115 (60.87%), Postives = 81/115 (70.43%), Query Frame = 0 
Query:   14 RREIASCFSTGLAGVATLSILSSSVPLQAGAAAAAGKKAGTTEYVAQIQAGYKELKAMYGDEWASTKAKGGDEVRRRLGIVGVKSPLFRIDKAMKAVQEALLDGELGEEVGDPLE 129
            RR +   FS GL   A L +LS   P       AA  K     YV+QI++GYKELK MY +EWASTKAKGGDEVRRRLGIVG KSPLFRIDKA+KAVQ ALL+G+LGE+V   +E
Sbjct:   66 RRILTGYFSKGLVSAAALQVLSFPSP-----TIAATNKTAIAAYVSQIESGYKELKTMYKEEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDVSGGVE 175
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BLAST of NO15G00040 vs. NCBI_GenBank
Match: CEM39206.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 95.5 bits (236), Expect = 1.900e-16
Identity = 73/180 (40.56%), Postives = 100/180 (55.56%), Query Frame = 0 
Query:   14 RREIASCFSTGLAGVATLSILSSSVP-LQAGAAAAAG---KKAGTTEYVAQIQAGYKELKAMYGDEWASTKAKG-GDEVRRRLGIVGVKSPLFRIDKAMKAVQEALLDGELGEEVGDPLEFVDASQRVLDGIKNADFLAYSNNFSSYGNGGGGTDFMEESRQALTPALEAYEEMLSILRL 189
            RR        GLA +  L +LS   P L    +A AG   + A   EY+A+IQ GY  LK +  D+W +  AKG GD VRR LG VG  SPLF+I++A + V +AL  G+      D LE+ ++   VL+G++  D+LAYSNNF+     G   D++EESR      L  Y E+L IL +
Sbjct:   70 RRSALVTAQVGLAAL-VLPLLSIGGPALAVTRSALAGDVPRGAPALEYIARIQNGYLALKELL-DKWGTVAAKGDGDAVRRYLGTVGTYSPLFQINRAFEGVLQALSKGDDSLGDVDVLEYGESYNLVLEGLRQTDYLAYSNNFAM--AVGDTKDYLEESRLQAERTLRQYREVLRILNV 245
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BLAST of NO15G00040 vs. NCBI_GenBank
Match: CBJ28405.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.9 bits (154), Expect = 6.100e-7
Identity = 40/124 (32.26%), Postives = 70/124 (56.45%), Query Frame = 0 
Query:   65 YKELKAMYGDEWASTKAKGGDEVRRRLGIVGVKSPLFRIDKAMKAVQEALLDGELGEEVGDPLEFVDASQRVLDGIKNADFLAYSNNFSSYGNGGG--GTDFMEESRQALTPALEAYEEMLSIL 187
            Y+ L+ +  +    T  + GD +RR +G +GV SPL  I KA  ++++A    E  +   D +E+V+A   VL  + +A+   YS NF+ Y  GGG  G+ F+ ++ ++L  A + ++E+  IL
Sbjct:  141 YQSLEDVLENWEKYTARQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDA---EEASQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFIAKANKSLKIAKDEFKEVNKIL 261
The following BLAST results are available for this feature:
BLAST of NO15G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854382.17.800e-4781.20hypothetical protein NGA_0207500 [Nannochloropsis ... [more]
EWM20833.11.000e-2560.87hypothetical protein Naga_100524g2 [Nannochloropsi... [more]
CEM39206.11.900e-1640.56unnamed protein product [Vitrella brassicaformis C... [more]
CBJ28405.16.100e-732.26conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL149nonsL149Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008557NSK008557Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00040.1NO15G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100524g2gene9583Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00040.1NO15G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00040 ID=NO15G00040|Name=NO15G00040|organism=Nannochloropsis oceanica|type=gene|length=1946bp
ATGAGAGGGAGTAGGAGCAAGCACTGCTTAGATAGCACGCGTCGTGAGAT
AGCCTCGTGCTTTAGTACGGGCTTGGCTGGGGTGGCCACACTTTCCATCC
TCTCTTCTTCCGTCCCCTTGCAAGCAGGAGCAGCAGCAGCTGCGGGAAAG
AAAGCAGGGACAACAGAGTATGTGGCTCAGgtaggaatggtcggaggatt
ggattaagtaagagcaggaaaaaaggatggaagagatgctggagaagtta
agacaagtcatttgccagtggtgacccggccactccacctccacccttta
cccatcttctcttccctccctccttttcttgtgcaaatgaatgccatcct
tctctctttcgcccaccctgccttgtgggcccctaaatctcttcttcaca
gATCCAAGCCGGCTACAAGGAGCTCAAAGCCATGTATGGGgtgcgtccgc
tagaagggagggcgttgggggggcagggagggaagagtaaggaagaaaag
agggagtggtgaacctgacaggggagcaagaaagggaggcgaccgagctt
aaagtcttcattatgtcgtgggtctgcttgcttgctatagtgaagatgtt
ctcgatacgtgcttctctgtgcccctctccttccttcacggcccgccgtc
tctttcccagtcttcttctcttcgcctggcaagaaatgcgtggcctcgaa
cccgctgagtctgattatcctttaattatcctctgcttctctccgtgttc
ccaaccaaatctcctttgcttcttattttactcctcaactgcagGACGAG
TGGGCAAGCACCAAGGCCAAGGGCGGGGATGAGGTGCGGCGCCGGCTGGg
tacgttggaaagaagaaaggaaaagagggaggacgagggagagggggctg
atacacaataacgctcattttggtccacatctcttcgctatttcacgctt
tgtcgtgaattaaagcaactagcaaaactcactgtcacctccccatctct
gtcgggcgtcatttggcagcatctttcctcccacttccttccctccctct
ttccctctttccctctctccctccctccctccctccctccctccctttct
ccttttcctaacccagGCATCGTTGGCGTGAAGAGTCCGCTATTTCGTAT
CGATAAGGCCATGAAGGCTGTGCAGGAAGCGCTCCTCGACGGGGAGCTCG
GGGAAGAGgtaaggaagggaagttataaagaggaggatatggagggatgc
agggccggcgttgcagggcatgtgggtgctgacggagaaggggacttagg
taggcagaccggcggtcacgccccatccctcattgagctctttctcctcc
gatgccccactcaaaaccctttttccatgctcttcacactcttctcttgt
agctgatttcccctcacgtgtccctccactttctttttccctgtttgtct
cctctcccccctccttcagGTGGGCGATCCCTTAGAGTTTGTCGACGCCT
CCCAGCGCGTGCTCGATGGAATCAAGAACGCAGACTTTCTGGgtaagggc
gggaggcaaggagggaaggacagcgggaggcggcgggggatagatgtgtc
gggatgacctctctgtacgctgagaacgccaagcgggctcatggaggagg
aggaggcttggctcgtggttgggtctggagaaagcagagagaggggttga
ttgaaagatgggctcggtggtcaggagaaatttgtagatagcagggcgag
ataccaattgcatacggcaatacgtgcatctcactacctccccccctgtc
ttcttactttagCCTACAGCAACAACTTTTCGTCTTACGGGAATGGCGGG
GGAGGCACGGACTTTATGGAGGAGAGTCGCCAGGCCCTAACACCGGCGTT
GGAAGCCTACGAAGAGATGCTCTCCATTTTGCGGCTCTCCAAGTAG
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protein sequence of NO15G00040.1

>NO15G00040.1-protein ID=NO15G00040.1-protein|Name=NO15G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MRGSRSKHCLDSTRREIASCFSTGLAGVATLSILSSSVPLQAGAAAAAGK
KAGTTEYVAQIQAGYKELKAMYGDEWASTKAKGGDEVRRRLGIVGVKSPL
FRIDKAMKAVQEALLDGELGEEVGDPLEFVDASQRVLDGIKNADFLAYSN
NFSSYGNGGGGTDFMEESRQALTPALEAYEEMLSILRLSK*
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Synonyms
Publications