NO15G00040.1, NO15G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00040.1
Unique NameNO15G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length573
Alignment locationchr15:4896..6841 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:4896..6841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00040.1 vs.
Match: XP_005854382.1 (hypothetical protein NGA_0207500 [Nannochloropsis gaditana CCMP526]; EKU21976.1 hypothetical protein NGA_0207500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 196.4 bits (498), Expect = 7.800e-47
Identity = 95/117 (81.20%), Postives = 109/117 (93.16%), Query Frame = 0 
Query:   74 DEWASTKAKGGDEVRRRLGIVGVKSPLFRIDKAMKAVQEALLDGELGEEVGDPLEFVDASQRVLDGIKNADFLAYSNNFSSYGNGGGGTDFMEESRQALTPALEAYEEMLSILRLSK 191
            +EWASTKAKGGDEVRRRLGIVG KSPLFRIDKA+KAVQ ALL+G+LGE+VGD L+FVDASQRVLDGIKNADFLAYSNNF+S+GNGGG  DFME+S +A+TPALEA+E+M+ ILRL K
Sbjct:   14 EEWASTKAKGGDEVRRRLGIVGTKSPLFRIDKAIKAVQNALLEGDLGEDVGDVLDFVDASQRVLDGIKNADFLAYSNNFASFGNGGGALDFMEQSHEAMTPALEAFEDMMDILRLPK 130
The following BLAST results are available for this feature:
BLAST of NO15G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854382.17.800e-4781.20hypothetical protein NGA_0207500 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00040NO15G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00040.1NO15G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00040.1.cds1NO15G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00040.1.cds2NO15G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00040.1.cds3NO15G00040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00040.1.cds4NO15G00040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00040.1.cds5NO15G00040.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00040.1.cds6NO15G00040.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00040.1 ID=NO15G00040.1|Name=NO15G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=573bp
ATGAGAGGGAGTAGGAGCAAGCACTGCTTAGATAGCACGCGTCGTGAGAT
AGCCTCGTGCTTTAGTACGGGCTTGGCTGGGGTGGCCACACTTTCCATCC
TCTCTTCTTCCGTCCCCTTGCAAGCAGGAGCAGCAGCAGCTGCGGGAAAG
AAAGCAGGGACAACAGAGTATGTGGCTCAGATCCAAGCCGGCTACAAGGA
GCTCAAAGCCATGTATGGGGACGAGTGGGCAAGCACCAAGGCCAAGGGCG
GGGATGAGGTGCGGCGCCGGCTGGGCATCGTTGGCGTGAAGAGTCCGCTA
TTTCGTATCGATAAGGCCATGAAGGCTGTGCAGGAAGCGCTCCTCGACGG
GGAGCTCGGGGAAGAGGTGGGCGATCCCTTAGAGTTTGTCGACGCCTCCC
AGCGCGTGCTCGATGGAATCAAGAACGCAGACTTTCTGGCCTACAGCAAC
AACTTTTCGTCTTACGGGAATGGCGGGGGAGGCACGGACTTTATGGAGGA
GAGTCGCCAGGCCCTAACACCGGCGTTGGAAGCCTACGAAGAGATGCTCT
CCATTTTGCGGCTCTCCAAGTAG
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protein sequence of NO15G00040.1

>NO15G00040.1-protein ID=NO15G00040.1-protein|Name=NO15G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MRGSRSKHCLDSTRREIASCFSTGLAGVATLSILSSSVPLQAGAAAAAGK
KAGTTEYVAQIQAGYKELKAMYGDEWASTKAKGGDEVRRRLGIVGVKSPL
FRIDKAMKAVQEALLDGELGEEVGDPLEFVDASQRVLDGIKNADFLAYSN
NFSSYGNGGGGTDFMEESRQALTPALEAYEEMLSILRLSK*
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mRNA from alignment at chr15:4896..6841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00040.1 ID=NO15G00040.1|Name=NO15G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1946bp|location=Sequence derived from alignment at chr15:4896..6841+ (Nannochloropsis oceanica)
ATGAGAGGGAGTAGGAGCAAGCACTGCTTAGATAGCACGCGTCGTGAGAT
AGCCTCGTGCTTTAGTACGGGCTTGGCTGGGGTGGCCACACTTTCCATCC
TCTCTTCTTCCGTCCCCTTGCAAGCAGGAGCAGCAGCAGCTGCGGGAAAG
AAAGCAGGGACAACAGAGTATGTGGCTCAGGTAGGAATGGTCGGAGGATT
GGATTAAGTAAGAGCAGGAAAAAAGGATGGAAGAGATGCTGGAGAAGTTA
AGACAAGTCATTTGCCAGTGGTGACCCGGCCACTCCACCTCCACCCTTTA
CCCATCTTCTCTTCCCTCCCTCCTTTTCTTGTGCAAATGAATGCCATCCT
TCTCTCTTTCGCCCACCCTGCCTTGTGGGCCCCTAAATCTCTTCTTCACA
GATCCAAGCCGGCTACAAGGAGCTCAAAGCCATGTATGGGGTGCGTCCGC
TAGAAGGGAGGGCGTTGGGGGGGCAGGGAGGGAAGAGTAAGGAAGAAAAG
AGGGAGTGGTGAACCTGACAGGGGAGCAAGAAAGGGAGGCGACCGAGCTT
AAAGTCTTCATTATGTCGTGGGTCTGCTTGCTTGCTATAGTGAAGATGTT
CTCGATACGTGCTTCTCTGTGCCCCTCTCCTTCCTTCACGGCCCGCCGTC
TCTTTCCCAGTCTTCTTCTCTTCGCCTGGCAAGAAATGCGTGGCCTCGAA
CCCGCTGAGTCTGATTATCCTTTAATTATCCTCTGCTTCTCTCCGTGTTC
CCAACCAAATCTCCTTTGCTTCTTATTTTACTCCTCAACTGCAGGACGAG
TGGGCAAGCACCAAGGCCAAGGGCGGGGATGAGGTGCGGCGCCGGCTGGG
TACGTTGGAAAGAAGAAAGGAAAAGAGGGAGGACGAGGGAGAGGGGGCTG
ATACACAATAACGCTCATTTTGGTCCACATCTCTTCGCTATTTCACGCTT
TGTCGTGAATTAAAGCAACTAGCAAAACTCACTGTCACCTCCCCATCTCT
GTCGGGCGTCATTTGGCAGCATCTTTCCTCCCACTTCCTTCCCTCCCTCT
TTCCCTCTTTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCT
CCTTTTCCTAACCCAGGCATCGTTGGCGTGAAGAGTCCGCTATTTCGTAT
CGATAAGGCCATGAAGGCTGTGCAGGAAGCGCTCCTCGACGGGGAGCTCG
GGGAAGAGGTAAGGAAGGGAAGTTATAAAGAGGAGGATATGGAGGGATGC
AGGGCCGGCGTTGCAGGGCATGTGGGTGCTGACGGAGAAGGGGACTTAGG
TAGGCAGACCGGCGGTCACGCCCCATCCCTCATTGAGCTCTTTCTCCTCC
GATGCCCCACTCAAAACCCTTTTTCCATGCTCTTCACACTCTTCTCTTGT
AGCTGATTTCCCCTCACGTGTCCCTCCACTTTCTTTTTCCCTGTTTGTCT
CCTCTCCCCCCTCCTTCAGGTGGGCGATCCCTTAGAGTTTGTCGACGCCT
CCCAGCGCGTGCTCGATGGAATCAAGAACGCAGACTTTCTGGGTAAGGGC
GGGAGGCAAGGAGGGAAGGACAGCGGGAGGCGGCGGGGGATAGATGTGTC
GGGATGACCTCTCTGTACGCTGAGAACGCCAAGCGGGCTCATGGAGGAGG
AGGAGGCTTGGCTCGTGGTTGGGTCTGGAGAAAGCAGAGAGAGGGGTTGA
TTGAAAGATGGGCTCGGTGGTCAGGAGAAATTTGTAGATAGCAGGGCGAG
ATACCAATTGCATACGGCAATACGTGCATCTCACTACCTCCCCCCCTGTC
TTCTTACTTTAGCCTACAGCAACAACTTTTCGTCTTACGGGAATGGCGGG
GGAGGCACGGACTTTATGGAGGAGAGTCGCCAGGCCCTAACACCGGCGTT
GGAAGCCTACGAAGAGATGCTCTCCATTTTGCGGCTCTCCAAGTAG
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Coding sequence (CDS) from alignment at chr15:4896..6841+

>NO15G00040.1 ID=NO15G00040.1|Name=NO15G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr15:4896..6841+ (Nannochloropsis oceanica)
ATGAGAGGGAGTAGGAGCAAGCACTGCTTAGATAGCACGCGTCGTGAGAT
AGCCTCGTGCTTTAGTACGGGCTTGGCTGGGGTGGCCACACTTTCCATCC
TCTCTTCTTCCGTCCCCTTGCAAGCAGGAGCAGCAGCAGCTGCGGGAAAG
AAAGCAGGGACAACAGAGTATGTGGCTCAGATCCAAGCCGGCTACAAGGA
GCTCAAAGCCATGTATGGGGACGAGTGGGCAAGCACCAAGGCCAAGGGCG
GGGATGAGGTGCGGCGCCGGCTGGGCATCGTTGGCGTGAAGAGTCCGCTA
TTTCGTATCGATAAGGCCATGAAGGCTGTGCAGGAAGCGCTCCTCGACGG
GGAGCTCGGGGAAGAGGTGGGCGATCCCTTAGAGTTTGTCGACGCCTCCC
AGCGCGTGCTCGATGGAATCAAGAACGCAGACTTTCTGGCCTACAGCAAC
AACTTTTCGTCTTACGGGAATGGCGGGGGAGGCACGGACTTTATGGAGGA
GAGTCGCCAGGCCCTAACACCGGCGTTGGAAGCCTACGAAGAGATGCTCT
CCATTTTGCGGCTCTCCAAGTAG
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Synonyms
Publications