NO14G02950, NO14G02950 (gene) Nannochloropsis oceanica

Overview
NameNO14G02950
Unique NameNO14G02950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length661
Alignment locationchr14:870342..871002 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:870342..871002 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G02950 vs. NCBI_GenBank
Match: EWM24515.1 (hypothetical protein Naga_100678g4 [Nannochloropsis gaditana])

HSP 1 Score: 214.5 bits (545), Expect = 2.300e-52
Identity = 105/158 (66.46%), Postives = 125/158 (79.11%), Query Frame = 0 
Query:    1 MVRNCAFAAFISIVALASP-ALAHETTNLRMESNKAVAASPMDALSVTMPNPVHTWKDEKTGTFYAQNQVFLSNNDPTRAVCDVEFAVPVDEAAETRVESSYVSNVKTGKSGLTGDLPEYAEKIMPNESVNLGYLISGPSASAVKMGDFKVTAAEWCE 158
            M RN +    +++ ALASP   AH T  +  E  K    SP+DALS TMPNPVHTW+D+KTGT+YAQNQ+FL N D TRAVCDV+F VPVD AA+TRVESSYVS+V+T +SGL G LPEYA+KI PNE+VNLGYLISGP A AV+MGDFKVT+AEWC+
Sbjct:    1 MARNYSLGVLLAVAALASPFTQAHSTLRID-EGVKQTVTSPIDALSATMPNPVHTWEDKKTGTYYAQNQIFLKNTDATRAVCDVKFTVPVDAAAKTRVESSYVSHVETSRSGLDGSLPEYADKIFPNETVNLGYLISGPEAKAVEMGDFKVTSAEWCD 157
The following BLAST results are available for this feature:
BLAST of NO14G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24515.12.300e-5266.46hypothetical protein Naga_100678g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002520NSK002520Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02950.1NO14G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590642gene_5873Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100678g4gene5962Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02950.1NO14G02950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02950 ID=NO14G02950|Name=NO14G02950|organism=Nannochloropsis oceanica|type=gene|length=661bp
ATGGTTCGTAACTGTGCCTTTGCTGCCTTCATCTCCATCGTAGCCCTAGC
CTCCCCCGCTCTGGCGCACGAAACAACCAACCTTCGTATGGAAAGCAACA
AGGCCGTCGCCGCTTCTCCCATGGACGCGCTGTCGGTCACCATGCCCAAC
CCGGTTCACACGTGGAAGGATGAGAAAACTGGCACATTTTACGCACAAAA
CCAAGTATTCCTTTCCAACAACGACCCCACCCGCGCGGTGTGTGATGTGG
AATTCGCCGTGCCTGTCGATGAGGCGGCTGAGACGAGGGTAGAGAGCTCT
TATGTCTCGAATGTCAAGACGGGCAAAAGTGGGTTGACTGGAGACTTACC
TGAATATGCGGAAAAgtaagtatgactgaatacactacgtagagaaggga
taggagggaggaaaggggacgggagtaatagaatattgatcgtgatggag
caagttaattcgtactcttatgtatgccctgtcctccctccttccctccc
tccctccctttctttttcttcatctccatccaccaccaaccagGATTATG
CCTAACGAAAGCGTTAACCTGGGGTATCTTATCTCGGGGCCCTCGGCGAG
TGCAGTGAAGATGGGAGACTTCAAGGTTACTGCCGCCGAATGGTGCGAAG
AGGACAAATAG
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protein sequence of NO14G02950.1

>NO14G02950.1-protein ID=NO14G02950.1-protein|Name=NO14G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MVRNCAFAAFISIVALASPALAHETTNLRMESNKAVAASPMDALSVTMPN
PVHTWKDEKTGTFYAQNQVFLSNNDPTRAVCDVEFAVPVDEAAETRVESS
YVSNVKTGKSGLTGDLPEYAEKIMPNESVNLGYLISGPSASAVKMGDFKV
TAAEWCEEDK*
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Synonyms
Publications