NO14G02950.1, NO14G02950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02950.1
Unique NameNO14G02950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length483
Alignment locationchr14:870342..871002 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:870342..871002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G02950.1 vs.
Match: EWM24515.1 (hypothetical protein Naga_100678g4 [Nannochloropsis gaditana])

HSP 1 Score: 214.5 bits (545), Expect = 2.300e-52
Identity = 105/158 (66.46%), Postives = 125/158 (79.11%), Query Frame = 0 
Query:    1 MVRNCAFAAFISIVALASP-ALAHETTNLRMESNKAVAASPMDALSVTMPNPVHTWKDEKTGTFYAQNQVFLSNNDPTRAVCDVEFAVPVDEAAETRVESSYVSNVKTGKSGLTGDLPEYAEKIMPNESVNLGYLISGPSASAVKMGDFKVTAAEWCE 158
            M RN +    +++ ALASP   AH T  +  E  K    SP+DALS TMPNPVHTW+D+KTGT+YAQNQ+FL N D TRAVCDV+F VPVD AA+TRVESSYVS+V+T +SGL G LPEYA+KI PNE+VNLGYLISGP A AV+MGDFKVT+AEWC+
Sbjct:    1 MARNYSLGVLLAVAALASPFTQAHSTLRID-EGVKQTVTSPIDALSATMPNPVHTWEDKKTGTYYAQNQIFLKNTDATRAVCDVKFTVPVDAAAKTRVESSYVSHVETSRSGLDGSLPEYADKIFPNETVNLGYLISGPEAKAVEMGDFKVTSAEWCD 157
The following BLAST results are available for this feature:
BLAST of NO14G02950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24515.12.300e-5266.46hypothetical protein Naga_100678g4 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02950NO14G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02950.1NO14G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02950.1.cds1NO14G02950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02950.1.cds2NO14G02950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02950.1 ID=NO14G02950.1|Name=NO14G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=483bp
ATGGTTCGTAACTGTGCCTTTGCTGCCTTCATCTCCATCGTAGCCCTAGC
CTCCCCCGCTCTGGCGCACGAAACAACCAACCTTCGTATGGAAAGCAACA
AGGCCGTCGCCGCTTCTCCCATGGACGCGCTGTCGGTCACCATGCCCAAC
CCGGTTCACACGTGGAAGGATGAGAAAACTGGCACATTTTACGCACAAAA
CCAAGTATTCCTTTCCAACAACGACCCCACCCGCGCGGTGTGTGATGTGG
AATTCGCCGTGCCTGTCGATGAGGCGGCTGAGACGAGGGTAGAGAGCTCT
TATGTCTCGAATGTCAAGACGGGCAAAAGTGGGTTGACTGGAGACTTACC
TGAATATGCGGAAAAGATTATGCCTAACGAAAGCGTTAACCTGGGGTATC
TTATCTCGGGGCCCTCGGCGAGTGCAGTGAAGATGGGAGACTTCAAGGTT
ACTGCCGCCGAATGGTGCGAAGAGGACAAATAG
back to top

protein sequence of NO14G02950.1

>NO14G02950.1-protein ID=NO14G02950.1-protein|Name=NO14G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MVRNCAFAAFISIVALASPALAHETTNLRMESNKAVAASPMDALSVTMPN
PVHTWKDEKTGTFYAQNQVFLSNNDPTRAVCDVEFAVPVDEAAETRVESS
YVSNVKTGKSGLTGDLPEYAEKIMPNESVNLGYLISGPSASAVKMGDFKV
TAAEWCEEDK*
back to top

mRNA from alignment at chr14:870342..871002+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02950.1 ID=NO14G02950.1|Name=NO14G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=661bp|location=Sequence derived from alignment at chr14:870342..871002+ (Nannochloropsis oceanica)
ATGGTTCGTAACTGTGCCTTTGCTGCCTTCATCTCCATCGTAGCCCTAGC
CTCCCCCGCTCTGGCGCACGAAACAACCAACCTTCGTATGGAAAGCAACA
AGGCCGTCGCCGCTTCTCCCATGGACGCGCTGTCGGTCACCATGCCCAAC
CCGGTTCACACGTGGAAGGATGAGAAAACTGGCACATTTTACGCACAAAA
CCAAGTATTCCTTTCCAACAACGACCCCACCCGCGCGGTGTGTGATGTGG
AATTCGCCGTGCCTGTCGATGAGGCGGCTGAGACGAGGGTAGAGAGCTCT
TATGTCTCGAATGTCAAGACGGGCAAAAGTGGGTTGACTGGAGACTTACC
TGAATATGCGGAAAAGTAAGTATGACTGAATACACTACGTAGAGAAGGGA
TAGGAGGGAGGAAAGGGGACGGGAGTAATAGAATATTGATCGTGATGGAG
CAAGTTAATTCGTACTCTTATGTATGCCCTGTCCTCCCTCCTTCCCTCCC
TCCCTCCCTTTCTTTTTCTTCATCTCCATCCACCACCAACCAGGATTATG
CCTAACGAAAGCGTTAACCTGGGGTATCTTATCTCGGGGCCCTCGGCGAG
TGCAGTGAAGATGGGAGACTTCAAGGTTACTGCCGCCGAATGGTGCGAAG
AGGACAAATAG
back to top

Coding sequence (CDS) from alignment at chr14:870342..871002+

>NO14G02950.1 ID=NO14G02950.1|Name=NO14G02950.1|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at chr14:870342..871002+ (Nannochloropsis oceanica)
ATGGTTCGTAACTGTGCCTTTGCTGCCTTCATCTCCATCGTAGCCCTAGC
CTCCCCCGCTCTGGCGCACGAAACAACCAACCTTCGTATGGAAAGCAACA
AGGCCGTCGCCGCTTCTCCCATGGACGCGCTGTCGGTCACCATGCCCAAC
CCGGTTCACACGTGGAAGGATGAGAAAACTGGCACATTTTACGCACAAAA
CCAAGTATTCCTTTCCAACAACGACCCCACCCGCGCGGTGTGTGATGTGG
AATTCGCCGTGCCTGTCGATGAGGCGGCTGAGACGAGGGTAGAGAGCTCT
TATGTCTCGAATGTCAAGACGGGCAAAAGTGGGTTGACTGGAGACTTACC
TGAATATGCGGAAAAGATTATGCCTAACGAAAGCGTTAACCTGGGGTATC
TTATCTCGGGGCCCTCGGCGAGTGCAGTGAAGATGGGAGACTTCAAGGTT
ACTGCCGCCGAATGGTGCGAAGAGGACAAATAG
back to top
Synonyms
Publications