NO14G02880, NO14G02880 (gene) Nannochloropsis oceanica

Overview
NameNO14G02880
Unique NameNO14G02880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length964
Alignment locationchr14:852467..853430 -

Link to JBrowse

Properties
Property NameValue
DescriptionHigh mobility group
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:852467..853430 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO14G02880 vs. NCBI_GenBank
Match: EWM24523.1 (high mobility group [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 1.800e-29
Identity = 96/167 (57.49%), Postives = 109/167 (65.27%), Query Frame = 0 
Query:  129 FLMDPARLRALGIDRQMLVDIGLENEETRSNPLYLQMAHQLRRGARKKDPNAPKRPLSAYNLFFRDMKEGLTTAGPTVKKTFEGLGKYVGEEWRKLGEEEKGRXXXXXXXXXXXXHSEMAVYEGREEDLGEEEVMVNGEGGXXXXXXGCRSCREGEESGYGGRVRQR 296
            FL+DPARLRALGIDRQMLVD+G+ENEE+RS+P YL MAHQLRRGARKKDP+APKRPLSAYNLFFRD+KE LT  GP V                         XXXXXXXXXXXX       EGREE+L  E+V +  EGG           R+ E+ G GG+V QR
Sbjct:  170 FLLDPARLRALGIDRQMLVDVGIENEESRSDPFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGREEELEGEDVEIK-EGGEGKG-------RKAEDKG-GGKVGQR 327
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BLAST of NO14G02880 vs. NCBI_GenBank
Match: XP_007411406.1 (hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina 98AG31] >EGG05484.1 hypothetical protein MELLADRAFT_31192, partial [Melampsora larici-populina 98AG31])

HSP 1 Score: 65.9 bits (159), Expect = 2.500e-7
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:  170 RRGARKKDPNAPKRPLSAYNLFFRDMKEGLTTAGPTVKKTFEGLGKYVGEEWRKLGEEEKGRXXXXXXXXXXXXHSEMAVYE 252
            RR  R+KDPNAPKRPLSAY  F +D +E + T  P V  +F  +G+ +G +W+ LGEEEK               +E A YE
Sbjct:    2 RRVKREKDPNAPKRPLSAYMFFSQDWRERIKTENPEV--SFGEIGRLLGLKWKSLGEEEKKPYEDMACRDKKRHETEKAEYE 81
The following BLAST results are available for this feature:
BLAST of NO14G02880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24523.11.800e-2957.49high mobility group [Nannochloropsis gaditana][more]
XP_007411406.12.500e-743.90hypothetical protein MELLADRAFT_31192 [Melampsora ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02880.1NO14G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100545g3gene5956Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02880.1NO14G02880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02880 ID=NO14G02880|Name=NO14G02880|organism=Nannochloropsis oceanica|type=gene|length=964bp
ATGAAGGCCATAGGCAAGAATGCGACGGCCCGCCCAGGCGCTGgtaagat
gacattgggatatgaggggatggaggaatacgaagcacttacaccatcac
ccatgtatcttgacagACGCCCAACATGCTGCCGTCGTTGCTTCCTGGCT
TCCCCCACCCATTCCTTCCTGCATGAGTCTCCTTCGCAGCACCAAGACTT
TTCTTCCCTCCCTCCCTCCCCATGGGGCTGATGCGTTGGAAGGGTGTGAC
AACGAGCAGTCAGGAAGAAGAGACAAAGGAAGAGCTAGCGGCTGTCGAGA
AGGAGGAGGCAGAAAAAGTGGGAAAGCAGGCAGCAGCATGAAACGGAACG
GCAGCAGCACAGCAAGCCGGTCGTCCCCCTGTCCTCCCCTTTCCAACCAT
TCCTCCTCCACAAGCACCTCCTCCTCCTCCTCTTCCTCCACCTCCACCTC
CACGCCCTTCCTCATGGATCCTGCCCGGCTCCGTGCCCTTGGAATAGACA
GGCAAATGCTTGTCGATATAGGCCTAGAAAACGAGGAGACGCGCTCCAAC
CCCCTCTACCTCCAAATGGCCCATCAGCTCCGTCGTGGCGCGCGTAAGAA
AGACCCCAATGCCCCGAAGCGGCCCTTGTCAGCCTACAACCTCTTCTTTC
GTGACATGAAGGAAGGGCTGACAACGGCAGGTCCGACGGTCAAGAAGACT
TTCGAGGGGCTGGGGAAGTATGTGGGGGAGGAATGGAGGAAGCTGGGGGA
GGAGGAGAAGGGGAGGTACGAGCGAATGGCGGAGGTGGAGAGGAAGCGAT
ACCATAGCGAGATGGCCGTCTATGAGGGGAGGGAGGAGGATTTGGGGGAG
GAGGAGGTCATGGTGAACGGGGAGGGGGGGGGGAAGGGCAAAGGCGAGGG
CTGTCGGTCGTGCCGGGAGGGGGAGGAAAGCGGTTACGGGGGCAGAGTAC
GACAAAGAAGGTAA
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protein sequence of NO14G02880.1

>NO14G02880.1-protein ID=NO14G02880.1-protein|Name=NO14G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MKAIGKNATARPGADAQHAAVVASWLPPPIPSCMSLLRSTKTFLPSLPPH
GADALEGCDNEQSGRRDKGRASGCREGGGRKSGKAGSSMKRNGSSTASRS
SPCPPLSNHSSSTSTSSSSSSSTSTSTPFLMDPARLRALGIDRQMLVDIG
LENEETRSNPLYLQMAHQLRRGARKKDPNAPKRPLSAYNLFFRDMKEGLT
TAGPTVKKTFEGLGKYVGEEWRKLGEEEKGRYERMAEVERKRYHSEMAVY
EGREEDLGEEEVMVNGEGGGKGKGEGCRSCREGEESGYGGRVRQRR*
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Synonyms
Publications