NO14G02880.1, NO14G02880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02880.1
Unique NameNO14G02880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length891
Alignment locationchr14:852467..853430 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:852467..853430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02880.1 vs.
Match: EWM24523.1 (high mobility group [Nannochloropsis gaditana])

HSP 1 Score: 247.7 bits (631), Expect = 4.600e-62
Identity = 160/300 (53.33%), Postives = 202/300 (67.33%), Query Frame = 0 
Query:   12 PGADAQHAAVVASWLPPPIPSCMSLLRSTKTFLPSLPPHGADALEGCDNEQSGRRDKGRASGCREGGGRKSGKAGSSMKRNGSSTASRSSPCPPLSN-HSSSTSTSSSSS---------------SSTSTSTPFLMDPARLRALGIDRQMLVDIGLENEETRSNPLYLQMAHQLRRGARKKDPNAPKRPLSAYNLFFRDMKEGLTTAGPTVKKTFEGLGKYVGEEWRKLGEEEKGRYERMAEVERKRYHSEMAVYEGREEDLGEEEVMVNGEGGGKGKGEGCRSCREGEESGYGGRVRQR 296
            P  ++Q    + +WLPPPIPSCM L+  ++T   SLP     +      E+  +    R  G  +      G+ G +     + TA    PC   S+ HSSS++T+++SS               S+ S ST FL+DPARLRALGIDRQMLVD+G+ENEE+RS+P YL MAHQLRRGARKKDP+APKRPLSAYNLFFRD+KE LT  GP VKK+FEGLGKYVG+EWRKLGEEE+ RYE+MAEV+R+RYH EMAVYEGREE+L  E+V +  + GG+GKG      R+ E+ G GG+V QR
Sbjct:   39 PPTESQQNPPLPAWLPPPIPSCMGLINVSRTPSSSLPASVPGSRGPVPQEREEKEVLKRKRG--QASQATVGEKGKTSTGRQAFTAPPPLPCSSSSSSHSSSSTTTAASSTPGLPPPPFLPPPPPSAPSPSTSFLLDPARLRALGIDRQMLVDVGIENEESRSDPFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREEELEGEDVEI--KEGGEGKG------RKAEDKG-GGKVGQR 327
The following BLAST results are available for this feature:
BLAST of NO14G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24523.14.600e-6253.33high mobility group [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02880NO14G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02880.1NO14G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02880.1.cds1NO14G02880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02880.1.cds2NO14G02880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02880.1 ID=NO14G02880.1|Name=NO14G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
ATGAAGGCCATAGGCAAGAATGCGACGGCCCGCCCAGGCGCTGACGCCCA
ACATGCTGCCGTCGTTGCTTCCTGGCTTCCCCCACCCATTCCTTCCTGCA
TGAGTCTCCTTCGCAGCACCAAGACTTTTCTTCCCTCCCTCCCTCCCCAT
GGGGCTGATGCGTTGGAAGGGTGTGACAACGAGCAGTCAGGAAGAAGAGA
CAAAGGAAGAGCTAGCGGCTGTCGAGAAGGAGGAGGCAGAAAAAGTGGGA
AAGCAGGCAGCAGCATGAAACGGAACGGCAGCAGCACAGCAAGCCGGTCG
TCCCCCTGTCCTCCCCTTTCCAACCATTCCTCCTCCACAAGCACCTCCTC
CTCCTCCTCTTCCTCCACCTCCACCTCCACGCCCTTCCTCATGGATCCTG
CCCGGCTCCGTGCCCTTGGAATAGACAGGCAAATGCTTGTCGATATAGGC
CTAGAAAACGAGGAGACGCGCTCCAACCCCCTCTACCTCCAAATGGCCCA
TCAGCTCCGTCGTGGCGCGCGTAAGAAAGACCCCAATGCCCCGAAGCGGC
CCTTGTCAGCCTACAACCTCTTCTTTCGTGACATGAAGGAAGGGCTGACA
ACGGCAGGTCCGACGGTCAAGAAGACTTTCGAGGGGCTGGGGAAGTATGT
GGGGGAGGAATGGAGGAAGCTGGGGGAGGAGGAGAAGGGGAGGTACGAGC
GAATGGCGGAGGTGGAGAGGAAGCGATACCATAGCGAGATGGCCGTCTAT
GAGGGGAGGGAGGAGGATTTGGGGGAGGAGGAGGTCATGGTGAACGGGGA
GGGGGGGGGGAAGGGCAAAGGCGAGGGCTGTCGGTCGTGCCGGGAGGGGG
AGGAAAGCGGTTACGGGGGCAGAGTACGACAAAGAAGGTAA
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protein sequence of NO14G02880.1

>NO14G02880.1-protein ID=NO14G02880.1-protein|Name=NO14G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MKAIGKNATARPGADAQHAAVVASWLPPPIPSCMSLLRSTKTFLPSLPPH
GADALEGCDNEQSGRRDKGRASGCREGGGRKSGKAGSSMKRNGSSTASRS
SPCPPLSNHSSSTSTSSSSSSSTSTSTPFLMDPARLRALGIDRQMLVDIG
LENEETRSNPLYLQMAHQLRRGARKKDPNAPKRPLSAYNLFFRDMKEGLT
TAGPTVKKTFEGLGKYVGEEWRKLGEEEKGRYERMAEVERKRYHSEMAVY
EGREEDLGEEEVMVNGEGGGKGKGEGCRSCREGEESGYGGRVRQRR*
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mRNA from alignment at chr14:852467..853430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02880.1 ID=NO14G02880.1|Name=NO14G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=964bp|location=Sequence derived from alignment at chr14:852467..853430- (Nannochloropsis oceanica)
ATGAAGGCCATAGGCAAGAATGCGACGGCCCGCCCAGGCGCTGGTAAGAT
GACATTGGGATATGAGGGGATGGAGGAATACGAAGCACTTACACCATCAC
CCATGTATCTTGACAGACGCCCAACATGCTGCCGTCGTTGCTTCCTGGCT
TCCCCCACCCATTCCTTCCTGCATGAGTCTCCTTCGCAGCACCAAGACTT
TTCTTCCCTCCCTCCCTCCCCATGGGGCTGATGCGTTGGAAGGGTGTGAC
AACGAGCAGTCAGGAAGAAGAGACAAAGGAAGAGCTAGCGGCTGTCGAGA
AGGAGGAGGCAGAAAAAGTGGGAAAGCAGGCAGCAGCATGAAACGGAACG
GCAGCAGCACAGCAAGCCGGTCGTCCCCCTGTCCTCCCCTTTCCAACCAT
TCCTCCTCCACAAGCACCTCCTCCTCCTCCTCTTCCTCCACCTCCACCTC
CACGCCCTTCCTCATGGATCCTGCCCGGCTCCGTGCCCTTGGAATAGACA
GGCAAATGCTTGTCGATATAGGCCTAGAAAACGAGGAGACGCGCTCCAAC
CCCCTCTACCTCCAAATGGCCCATCAGCTCCGTCGTGGCGCGCGTAAGAA
AGACCCCAATGCCCCGAAGCGGCCCTTGTCAGCCTACAACCTCTTCTTTC
GTGACATGAAGGAAGGGCTGACAACGGCAGGTCCGACGGTCAAGAAGACT
TTCGAGGGGCTGGGGAAGTATGTGGGGGAGGAATGGAGGAAGCTGGGGGA
GGAGGAGAAGGGGAGGTACGAGCGAATGGCGGAGGTGGAGAGGAAGCGAT
ACCATAGCGAGATGGCCGTCTATGAGGGGAGGGAGGAGGATTTGGGGGAG
GAGGAGGTCATGGTGAACGGGGAGGGGGGGGGGAAGGGCAAAGGCGAGGG
CTGTCGGTCGTGCCGGGAGGGGGAGGAAAGCGGTTACGGGGGCAGAGTAC
GACAAAGAAGGTAA
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Coding sequence (CDS) from alignment at chr14:852467..853430-

>NO14G02880.1 ID=NO14G02880.1|Name=NO14G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr14:852467..853430- (Nannochloropsis oceanica)
ATGAAGGCCATAGGCAAGAATGCGACGGCCCGCCCAGGCGCTGACGCCCA
ACATGCTGCCGTCGTTGCTTCCTGGCTTCCCCCACCCATTCCTTCCTGCA
TGAGTCTCCTTCGCAGCACCAAGACTTTTCTTCCCTCCCTCCCTCCCCAT
GGGGCTGATGCGTTGGAAGGGTGTGACAACGAGCAGTCAGGAAGAAGAGA
CAAAGGAAGAGCTAGCGGCTGTCGAGAAGGAGGAGGCAGAAAAAGTGGGA
AAGCAGGCAGCAGCATGAAACGGAACGGCAGCAGCACAGCAAGCCGGTCG
TCCCCCTGTCCTCCCCTTTCCAACCATTCCTCCTCCACAAGCACCTCCTC
CTCCTCCTCTTCCTCCACCTCCACCTCCACGCCCTTCCTCATGGATCCTG
CCCGGCTCCGTGCCCTTGGAATAGACAGGCAAATGCTTGTCGATATAGGC
CTAGAAAACGAGGAGACGCGCTCCAACCCCCTCTACCTCCAAATGGCCCA
TCAGCTCCGTCGTGGCGCGCGTAAGAAAGACCCCAATGCCCCGAAGCGGC
CCTTGTCAGCCTACAACCTCTTCTTTCGTGACATGAAGGAAGGGCTGACA
ACGGCAGGTCCGACGGTCAAGAAGACTTTCGAGGGGCTGGGGAAGTATGT
GGGGGAGGAATGGAGGAAGCTGGGGGAGGAGGAGAAGGGGAGGTACGAGC
GAATGGCGGAGGTGGAGAGGAAGCGATACCATAGCGAGATGGCCGTCTAT
GAGGGGAGGGAGGAGGATTTGGGGGAGGAGGAGGTCATGGTGAACGGGGA
GGGGGGGGGGAAGGGCAAAGGCGAGGGCTGTCGGTCGTGCCGGGAGGGGG
AGGAAAGCGGTTACGGGGGCAGAGTACGACAAAGAAGGTAA
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Synonyms
Publications