NO14G02820, NO14G02820 (gene) Nannochloropsis oceanica

Overview
NameNO14G02820
Unique NameNO14G02820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2022
Alignment locationchr14:837923..839944 +

Link to JBrowse

Properties
Property NameValue
DescriptionGalactose oxidase/kelch, beta-propeller
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:837923..839944 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011043Gal_Oxase/kelch_b-propeller
Homology
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BLAST of NO14G02820 vs. NCBI_GenBank
Match: EWM24531.1 (Galactose oxidase/kelch, beta-propeller [Nannochloropsis gaditana])

HSP 1 Score: 418.7 bits (1075), Expect = 2.400e-113
Identity = 248/495 (50.10%), Postives = 301/495 (60.81%), Query Frame = 0 
Query:   23 VSITQADNGQQPPPIMSAITGAFANGTQFLIFGGCTSSCCFAPIDAQWTLDLTQDLTQGTWSKR--IPHSGSLTAM--------SAVPSARFGAASTVDSTKDILYAFGGQDSSQAFLGDLYKFEARTQEWTEIKPSIFSETSTLSFQRPPAPRAAASLSVVRGGVGGGREGGRGQEKHLVLIGGFGRQGAKEDEVWGLKLSGTGRQ------------MENGWVRL-------------VPSSSTDVREVEEGKEEGTP-----SRSTSRGLPARWHHVAVPVKIPNITPSPSSSSPSFPCEEGRGQKDALVIVGGSDATGQDHNEALLVEIDWEEGTYTWRVLAAETEEKEQDERSRPPVRHGHLALHPPYPLHSSFFHIFGGLNTTSDTLPSSFLSDTFRFDLPPVEAWTEEDLPLSPSVPGPRAYAGVGHGERHTLVVGGFAGFTGDTDDRLLNDVWVFRHGEAVEEGVKEGGLNGGSEEVAREDRRQHLR 478
            VS+ Q D   +PPP MSAITGAFANGT+FL++GGCTSSCCF+P+DA W L L+ DL +G+W +   +   G    M        S+ PSARFGAAS VD   D+LYAFGGQDSSQAFL D++ + A + EW EI  S  S T    +   P PRAAASLSVV     G         K LVL+GGFG+ GA++++VW ++L    RQ            +  GW+RL              PSS +     EE K    P     S ++S   PARWHHVAVP      TPSPSSS PS         K  L++VGG DA G+D NE  L+  DW   TY WRVLA  T + E    +R PVRHGH+ALH   P   S F IFGGLNTT DTLPSSFL+ TFRFDLPP+E W++ED    PS PG RAYAGVGHGE+H++VVGGFAGFTGDTDDRLL+DVWVF HGE VE+   +  L  G ++     + +HLR
Sbjct:   24 VSVPQGD--LRPPPTMSAITGAFANGTKFLLYGGCTSSCCFSPVDAHWELSLSPDLKEGSWKQHTGLRSDGGTDNMGNPVSSHPSSAPSARFGAASAVDKEDDVLYAFGGQDSSQAFLSDMWAYNAMSSEWREIPASDRSRTDEDVW---PTPRAAASLSVVADEAVG---------KVLVLVGGFGKVGAEDNQVWAMRLGAQARQKTEGRPVDQDLLVSEGWIRLRPEQMESGVGKESHPSSYSAAYGDEEIKNIPFPPTRRSSLASSVNFPARWHHVAVPSTSTGATPSPSSSPPS-------SSKAGLILVGGVDAMGEDRNEVYLMTFDWHRRTYAWRVLAMGTADDE--SITRLPVRHGHVALHSSSPSFPS-FRIFGGLNTTHDTLPSSFLATTFRFDLPPIERWSKEDF---PSSPGARAYAGVGHGEKHSIVVGGFAGFTGDTDDRLLDDVWVFSHGEEVEQ--LQMALTAGGDKEGWNMKGRHLR 489
The following BLAST results are available for this feature:
BLAST of NO14G02820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24531.12.400e-11350.10Galactose oxidase/kelch, beta-propeller [Nannochlo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002509NSK002509Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02820.1NO14G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|39305gene_5865Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02820.1NO14G02820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02820 ID=NO14G02820|Name=NO14G02820|organism=Nannochloropsis oceanica|type=gene|length=2022bp
ACAGGCCAGCGTCAAATCAATCAAGCTATGCACCGCCTACTCCCCCTACT
CCCCCTTGCCGCCGCCGCCTCCTCCTCCTCCTCCTGGTCCCAAGTTAGCA
TCACCCAAGCCGACAACGGGCAGCAACCCCCGCCCATCATGTCTGCTATC
ACCGGTGCCTTTGCCAATGGCACCCAGTTCCTGATTTTCGGTGGCTGCAC
AAGCTCATGTTGTTTTGCCCCCATCGACGCTCAATGGACACTCGACCTCA
CCCAGGACCTGACGCAGGGCACCTGGTCTAAACGCATCCCTCACTCCGGC
TCTTTGACCGCGATGTCCGCCGTTCCTTCCGCCCGCTTCGGCGCCGCTAG
CACCGTGGATTCAACGAAGGACATTCTCTATGCCTTTGGCGGACAAGACT
CTTCTCAAGCTTTTCTTGGGGACTTGTACAAGTTCGAGGCACGCACGCAG
GAATGGACCGAAATCAAGCCTTCAATCTTTTCTGAAACTTCCACGTTGTC
TTTTCAACGGCCACCTGCTCCAAGAGCAGCGGCTTCCTTGTCCGTCGTCC
GGGGAGGAGTGGGAGGAGGACGGGAGGGAGGGAGGGGACAGGAGAAGCAC
CTAGTTTTAATTGGGGGCTTTGGCCGGCAGGGTGCAAAAGAAGATGAGGT
TTGGGGTTTGAAATTGTCTGGTACTGGAAGACAAATGGAAAACGGCTGGG
TACGTCTTGTTCCCTCATCTTCTACTGATGTGAGGGAGGTGGAGGAGGGG
AAGGAGGAAGGCACTCCCTCTCGCTCCACGTCAAGGGGGCTGCCCGCACG
GTGGCATCACGTTGCGGTGCCCGTCAAGATCCCTAACATCACCCCCTCTC
CCTCCTCTTCCTCGCCTTCCTTCCCATGCGAGGAAGGGAGGGGACAAAAG
GATGCTTTGGTCATCGTGGGAGGGTCCGACGCAACCGGGCAAGATCACAA
CGAGGCCTTGCTTGTGGAGATTGACTGGGAGGAAGGCACCTACACATGGC
GGGTCTTGGCGGCAGAAACAGAGGAGAAGGAGCAGGACGAAAGGAGCCGA
CCGCCCGTCAGGCAgtaagtttttcgtgtgggaggagaatggcgggtgtg
ttgaaacagaggatgatcgtccctgtagtgcgattgcctgttctgtttgc
acgccataatttcattggaacgatgacataatttacacgcatggctttca
cccttccacacatttaccacacttctttccctctccctccctcccgtccc
acttcctcaaaccccacagCGGCCACCTCGCCCTTCATCCGCCCTACCCC
CTTCACTCCTCTTTTTTCCACATCTTTGGCGGACTAAATACCACTAGTGA
CACCCTCCCCTCGTCCTTCCTCTCCGACACCTTCCGATTTGATCTCCCCC
CCGTCGAGGCATGGACCGAGGAAGACCTACCCCTCTCTCCATCGGTCCCT
GGACCTCGGGCCTACGCGGGGGTGGGGCATGGCGAGAGACACACGCTAGT
AGTGGGAGGCTTTGCAGGCTTCACCGGTGACACGGACGACCGGCTGCTGA
ATGATGTGTGGGTGTTTCGACATGGGGAGGCAGTGGAGGAGGGCGTGAAG
GAGGGAGGGTTGAATGGCGGGAGCGAGGAAGTTGCGAGGGAAGATCGTCG
GCAACATTTGCGGTGATAGTAGAAATTGAGAACGGAAAAAGATGTAGAAA
TTTTAAAAAGAATGCACGCTTGCTTGACATTTACTTGTCTTTTTGTGGGA
AGTGTTTTGGAACGGAGATCGATGTCAAACTTTGCAAATGCATCGTGTAT
GTGATGCAATCCCAAACATTTTACGACGACCGGATCAGGGTTGGGTCGAC
GTTAGATTCCTGACGTCGACGCGTCAACGTCGACCAGAATTCCAACGTCG
ACGTACGTCATGACGTTGGGGGGTTTCGACGTTGAGGGTGTCCAGTGTGT
TTTGGGGTCTGAAATTGCTTTAGTCGTTGATAATAGTGTCATAGCAATTT
ACGATAGAGGTGGGAGCCTCCA
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protein sequence of NO14G02820.1

>NO14G02820.1-protein ID=NO14G02820.1-protein|Name=NO14G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MHRLLPLLPLAAAASSSSSWSQVSITQADNGQQPPPIMSAITGAFANGTQ
FLIFGGCTSSCCFAPIDAQWTLDLTQDLTQGTWSKRIPHSGSLTAMSAVP
SARFGAASTVDSTKDILYAFGGQDSSQAFLGDLYKFEARTQEWTEIKPSI
FSETSTLSFQRPPAPRAAASLSVVRGGVGGGREGGRGQEKHLVLIGGFGR
QGAKEDEVWGLKLSGTGRQMENGWVRLVPSSSTDVREVEEGKEEGTPSRS
TSRGLPARWHHVAVPVKIPNITPSPSSSSPSFPCEEGRGQKDALVIVGGS
DATGQDHNEALLVEIDWEEGTYTWRVLAAETEEKEQDERSRPPVRHGHLA
LHPPYPLHSSFFHIFGGLNTTSDTLPSSFLSDTFRFDLPPVEAWTEEDLP
LSPSVPGPRAYAGVGHGERHTLVVGGFAGFTGDTDDRLLNDVWVFRHGEA
VEEGVKEGGLNGGSEEVAREDRRQHLR*
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Synonyms
Publications