NO14G02820.1, NO14G02820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02820.1
Unique NameNO14G02820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1817
Alignment locationchr14:837923..839944 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:837923..839944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02820.1 vs.
Match: EWM24531.1 (Galactose oxidase/kelch, beta-propeller [Nannochloropsis gaditana])

HSP 1 Score: 424.9 bits (1091), Expect = 3.400e-115
Identity = 256/521 (49.14%), Postives = 311/521 (59.69%), Query Frame = 0 
Query:    3 RLLPLLP--LAAAASSSSSWSQVSITQADNGQQPPPIMSAITGAFANGTQFLIFGGCTSSCCFAPIDAQWTLDLTQDLTQGTWSKR--IPHSGSLTAM--------SAVPSARFGAASTVDSTKDILYAFGGQDSSQAFLGDLYKFEARTQEWTEIKPSIFSETSTLSFQRPPAPRAAASLSVVRGGVGGGREGGRGQEKHLVLIGGFGRQGAKEDEVWGLKLSGTGRQ------------MENGWVRLVPSSSTDVREVEEGKEEGTPSRSTSRG----------------------LPARWHHVAVPVKIPNITPSPSSSSPSFPCEEGRGQKDALVIVGGSDATGQDHNEALLVEIDWEEGTYTWRVLAAETEEKEQDERSRPPVRHGHLALHPPYPLHSSFFHIFGGLNTTSDTLPSSFLSDTFRFDLPPVEAWTEEDLPLSPSVPGPRAYAGVGHGERHTLVVGGFAGFTGDTDDRLLNDVWVFRHGEAVEEGVKEGGLNGGSEEVAREDRRQHLR 478
            R +PLL   L  +ASS  +W  VS+ Q D   +PPP MSAITGAFANGT+FL++GGCTSSCCF+P+DA W L L+ DL +G+W +   +   G    M        S+ PSARFGAAS VD   D+LYAFGGQDSSQAFL D++ + A + EW EI  S  S T    +   P PRAAASLSVV     G         K LVL+GGFG+ GA++++VW ++L    RQ            +  GW+RL P    +  E   GKE    S S + G                       PARWHHVAVP      TPSPSSS PS         K  L++VGG DA G+D NE  L+  DW   TY WRVLA  T + E    +R PVRHGH+ALH   P   S F IFGGLNTT DTLPSSFL+ TFRFDLPP+E W++ED    PS PG RAYAGVGHGE+H++VVGGFAGFTGDTDDRLL+DVWVF HGE VE+   +  L  G ++     + +HLR
Sbjct:    2 RNVPLLAFLLYRSASSLPTWWPVSVPQGD--LRPPPTMSAITGAFANGTKFLLYGGCTSSCCFSPVDAHWELSLSPDLKEGSWKQHTGLRSDGGTDNMGNPVSSHPSSAPSARFGAASAVDKEDDVLYAFGGQDSSQAFLSDMWAYNAMSSEWREIPASDRSRTDEDVW---PTPRAAASLSVVADEAVG---------KVLVLVGGFGKVGAEDNQVWAMRLGAQARQKTEGRPVDQDLLVSEGWIRLRP----EQMESGVGKESHPSSYSAAYGDEEIKNIPFPPTRRSSLASSVNFPARWHHVAVPSTSTGATPSPSSSPPS-------SSKAGLILVGGVDAMGEDRNEVYLMTFDWHRRTYAWRVLAMGTADDE--SITRLPVRHGHVALHSSSPSFPS-FRIFGGLNTTHDTLPSSFLATTFRFDLPPIERWSKEDF---PSSPGARAYAGVGHGEKHSIVVGGFAGFTGDTDDRLLDDVWVFSHGEEVEQ--LQMALTAGGDKEGWNMKGRHLR 489
The following BLAST results are available for this feature:
BLAST of NO14G02820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24531.13.400e-11549.14Galactose oxidase/kelch, beta-propeller [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02820NO14G02820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02820.1NO14G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02820.1.cds1NO14G02820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02820.1.cds2NO14G02820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02820.1 ID=NO14G02820.1|Name=NO14G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp
ACAGGCCAGCGTCAAATCAATCAAGCTATGCACCGCCTACTCCCCCTACT
CCCCCTTGCCGCCGCCGCCTCCTCCTCCTCCTCCTGGTCCCAAGTTAGCA
TCACCCAAGCCGACAACGGGCAGCAACCCCCGCCCATCATGTCTGCTATC
ACCGGTGCCTTTGCCAATGGCACCCAGTTCCTGATTTTCGGTGGCTGCAC
AAGCTCATGTTGTTTTGCCCCCATCGACGCTCAATGGACACTCGACCTCA
CCCAGGACCTGACGCAGGGCACCTGGTCTAAACGCATCCCTCACTCCGGC
TCTTTGACCGCGATGTCCGCCGTTCCTTCCGCCCGCTTCGGCGCCGCTAG
CACCGTGGATTCAACGAAGGACATTCTCTATGCCTTTGGCGGACAAGACT
CTTCTCAAGCTTTTCTTGGGGACTTGTACAAGTTCGAGGCACGCACGCAG
GAATGGACCGAAATCAAGCCTTCAATCTTTTCTGAAACTTCCACGTTGTC
TTTTCAACGGCCACCTGCTCCAAGAGCAGCGGCTTCCTTGTCCGTCGTCC
GGGGAGGAGTGGGAGGAGGACGGGAGGGAGGGAGGGGACAGGAGAAGCAC
CTAGTTTTAATTGGGGGCTTTGGCCGGCAGGGTGCAAAAGAAGATGAGGT
TTGGGGTTTGAAATTGTCTGGTACTGGAAGACAAATGGAAAACGGCTGGG
TACGTCTTGTTCCCTCATCTTCTACTGATGTGAGGGAGGTGGAGGAGGGG
AAGGAGGAAGGCACTCCCTCTCGCTCCACGTCAAGGGGGCTGCCCGCACG
GTGGCATCACGTTGCGGTGCCCGTCAAGATCCCTAACATCACCCCCTCTC
CCTCCTCTTCCTCGCCTTCCTTCCCATGCGAGGAAGGGAGGGGACAAAAG
GATGCTTTGGTCATCGTGGGAGGGTCCGACGCAACCGGGCAAGATCACAA
CGAGGCCTTGCTTGTGGAGATTGACTGGGAGGAAGGCACCTACACATGGC
GGGTCTTGGCGGCAGAAACAGAGGAGAAGGAGCAGGACGAAAGGAGCCGA
CCGCCCGTCAGGCACGGCCACCTCGCCCTTCATCCGCCCTACCCCCTTCA
CTCCTCTTTTTTCCACATCTTTGGCGGACTAAATACCACTAGTGACACCC
TCCCCTCGTCCTTCCTCTCCGACACCTTCCGATTTGATCTCCCCCCCGTC
GAGGCATGGACCGAGGAAGACCTACCCCTCTCTCCATCGGTCCCTGGACC
TCGGGCCTACGCGGGGGTGGGGCATGGCGAGAGACACACGCTAGTAGTGG
GAGGCTTTGCAGGCTTCACCGGTGACACGGACGACCGGCTGCTGAATGAT
GTGTGGGTGTTTCGACATGGGGAGGCAGTGGAGGAGGGCGTGAAGGAGGG
AGGGTTGAATGGCGGGAGCGAGGAAGTTGCGAGGGAAGATCGTCGGCAAC
ATTTGCGGTGATAGTAGAAATTGAGAACGGAAAAAGATGTAGAAATTTTA
AAAAGAATGCACGCTTGCTTGACATTTACTTGTCTTTTTGTGGGAAGTGT
TTTGGAACGGAGATCGATGTCAAACTTTGCAAATGCATCGTGTATGTGAT
GCAATCCCAAACATTTTACGACGACCGGATCAGGGTTGGGTCGACGTTAG
ATTCCTGACGTCGACGCGTCAACGTCGACCAGAATTCCAACGTCGACGTA
CGTCATGACGTTGGGGGGTTTCGACGTTGAGGGTGTCCAGTGTGTTTTGG
GGTCTGAAATTGCTTTAGTCGTTGATAATAGTGTCATAGCAATTTACGAT
AGAGGTGGGAGCCTCCA
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protein sequence of NO14G02820.1

>NO14G02820.1-protein ID=NO14G02820.1-protein|Name=NO14G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MHRLLPLLPLAAAASSSSSWSQVSITQADNGQQPPPIMSAITGAFANGTQ
FLIFGGCTSSCCFAPIDAQWTLDLTQDLTQGTWSKRIPHSGSLTAMSAVP
SARFGAASTVDSTKDILYAFGGQDSSQAFLGDLYKFEARTQEWTEIKPSI
FSETSTLSFQRPPAPRAAASLSVVRGGVGGGREGGRGQEKHLVLIGGFGR
QGAKEDEVWGLKLSGTGRQMENGWVRLVPSSSTDVREVEEGKEEGTPSRS
TSRGLPARWHHVAVPVKIPNITPSPSSSSPSFPCEEGRGQKDALVIVGGS
DATGQDHNEALLVEIDWEEGTYTWRVLAAETEEKEQDERSRPPVRHGHLA
LHPPYPLHSSFFHIFGGLNTTSDTLPSSFLSDTFRFDLPPVEAWTEEDLP
LSPSVPGPRAYAGVGHGERHTLVVGGFAGFTGDTDDRLLNDVWVFRHGEA
VEEGVKEGGLNGGSEEVAREDRRQHLR*
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mRNA from alignment at chr14:837923..839944+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02820.1 ID=NO14G02820.1|Name=NO14G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp|location=Sequence derived from alignment at chr14:837923..839944+ (Nannochloropsis oceanica)
ACAGGCCAGCGTCAAATCAATCAAGCTATGCACCGCCTACTCCCCCTACT
CCCCCTTGCCGCCGCCGCCTCCTCCTCCTCCTCCTGGTCCCAAGTTAGCA
TCACCCAAGCCGACAACGGGCAGCAACCCCCGCCCATCATGTCTGCTATC
ACCGGTGCCTTTGCCAATGGCACCCAGTTCCTGATTTTCGGTGGCTGCAC
AAGCTCATGTTGTTTTGCCCCCATCGACGCTCAATGGACACTCGACCTCA
CCCAGGACCTGACGCAGGGCACCTGGTCTAAACGCATCCCTCACTCCGGC
TCTTTGACCGCGATGTCCGCCGTTCCTTCCGCCCGCTTCGGCGCCGCTAG
CACCGTGGATTCAACGAAGGACATTCTCTATGCCTTTGGCGGACAAGACT
CTTCTCAAGCTTTTCTTGGGGACTTGTACAAGTTCGAGGCACGCACGCAG
GAATGGACCGAAATCAAGCCTTCAATCTTTTCTGAAACTTCCACGTTGTC
TTTTCAACGGCCACCTGCTCCAAGAGCAGCGGCTTCCTTGTCCGTCGTCC
GGGGAGGAGTGGGAGGAGGACGGGAGGGAGGGAGGGGACAGGAGAAGCAC
CTAGTTTTAATTGGGGGCTTTGGCCGGCAGGGTGCAAAAGAAGATGAGGT
TTGGGGTTTGAAATTGTCTGGTACTGGAAGACAAATGGAAAACGGCTGGG
TACGTCTTGTTCCCTCATCTTCTACTGATGTGAGGGAGGTGGAGGAGGGG
AAGGAGGAAGGCACTCCCTCTCGCTCCACGTCAAGGGGGCTGCCCGCACG
GTGGCATCACGTTGCGGTGCCCGTCAAGATCCCTAACATCACCCCCTCTC
CCTCCTCTTCCTCGCCTTCCTTCCCATGCGAGGAAGGGAGGGGACAAAAG
GATGCTTTGGTCATCGTGGGAGGGTCCGACGCAACCGGGCAAGATCACAA
CGAGGCCTTGCTTGTGGAGATTGACTGGGAGGAAGGCACCTACACATGGC
GGGTCTTGGCGGCAGAAACAGAGGAGAAGGAGCAGGACGAAAGGAGCCGA
CCGCCCGTCAGGCAGTAAGTTTTTCGTGTGGGAGGAGAATGGCGGGTGTG
TTGAAACAGAGGATGATCGTCCCTGTAGTGCGATTGCCTGTTCTGTTTGC
ACGCCATAATTTCATTGGAACGATGACATAATTTACACGCATGGCTTTCA
CCCTTCCACACATTTACCACACTTCTTTCCCTCTCCCTCCCTCCCGTCCC
ACTTCCTCAAACCCCACAGCGGCCACCTCGCCCTTCATCCGCCCTACCCC
CTTCACTCCTCTTTTTTCCACATCTTTGGCGGACTAAATACCACTAGTGA
CACCCTCCCCTCGTCCTTCCTCTCCGACACCTTCCGATTTGATCTCCCCC
CCGTCGAGGCATGGACCGAGGAAGACCTACCCCTCTCTCCATCGGTCCCT
GGACCTCGGGCCTACGCGGGGGTGGGGCATGGCGAGAGACACACGCTAGT
AGTGGGAGGCTTTGCAGGCTTCACCGGTGACACGGACGACCGGCTGCTGA
ATGATGTGTGGGTGTTTCGACATGGGGAGGCAGTGGAGGAGGGCGTGAAG
GAGGGAGGGTTGAATGGCGGGAGCGAGGAAGTTGCGAGGGAAGATCGTCG
GCAACATTTGCGGTGATAGTAGAAATTGAGAACGGAAAAAGATGTAGAAA
TTTTAAAAAGAATGCACGCTTGCTTGACATTTACTTGTCTTTTTGTGGGA
AGTGTTTTGGAACGGAGATCGATGTCAAACTTTGCAAATGCATCGTGTAT
GTGATGCAATCCCAAACATTTTACGACGACCGGATCAGGGTTGGGTCGAC
GTTAGATTCCTGACGTCGACGCGTCAACGTCGACCAGAATTCCAACGTCG
ACGTACGTCATGACGTTGGGGGGTTTCGACGTTGAGGGTGTCCAGTGTGT
TTTGGGGTCTGAAATTGCTTTAGTCGTTGATAATAGTGTCATAGCAATTT
ACGATAGAGGTGGGAGCCTCCA
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Coding sequence (CDS) from alignment at chr14:837923..839944+

>NO14G02820.1 ID=NO14G02820.1|Name=NO14G02820.1|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr14:837923..839944+ (Nannochloropsis oceanica)
ATGCACCGCCTACTCCCCCTACTCCCCCTTGCCGCCGCCGCCTCCTCCTC
CTCCTCCTGGTCCCAAGTTAGCATCACCCAAGCCGACAACGGGCAGCAAC
CCCCGCCCATCATGTCTGCTATCACCGGTGCCTTTGCCAATGGCACCCAG
TTCCTGATTTTCGGTGGCTGCACAAGCTCATGTTGTTTTGCCCCCATCGA
CGCTCAATGGACACTCGACCTCACCCAGGACCTGACGCAGGGCACCTGGT
CTAAACGCATCCCTCACTCCGGCTCTTTGACCGCGATGTCCGCCGTTCCT
TCCGCCCGCTTCGGCGCCGCTAGCACCGTGGATTCAACGAAGGACATTCT
CTATGCCTTTGGCGGACAAGACTCTTCTCAAGCTTTTCTTGGGGACTTGT
ACAAGTTCGAGGCACGCACGCAGGAATGGACCGAAATCAAGCCTTCAATC
TTTTCTGAAACTTCCACGTTGTCTTTTCAACGGCCACCTGCTCCAAGAGC
AGCGGCTTCCTTGTCCGTCGTCCGGGGAGGAGTGGGAGGAGGACGGGAGG
GAGGGAGGGGACAGGAGAAGCACCTAGTTTTAATTGGGGGCTTTGGCCGG
CAGGGTGCAAAAGAAGATGAGGTTTGGGGTTTGAAATTGTCTGGTACTGG
AAGACAAATGGAAAACGGCTGGGTACGTCTTGTTCCCTCATCTTCTACTG
ATGTGAGGGAGGTGGAGGAGGGGAAGGAGGAAGGCACTCCCTCTCGCTCC
ACGTCAAGGGGGCTGCCCGCACGGTGGCATCACGTTGCGGTGCCCGTCAA
GATCCCTAACATCACCCCCTCTCCCTCCTCTTCCTCGCCTTCCTTCCCAT
GCGAGGAAGGGAGGGGACAAAAGGATGCTTTGGTCATCGTGGGAGGGTCC
GACGCAACCGGGCAAGATCACAACGAGGCCTTGCTTGTGGAGATTGACTG
GGAGGAAGGCACCTACACATGGCGGGTCTTGGCGGCAGAAACAGAGGAGA
AGGAGCAGGACGAAAGGAGCCGACCGCCCGTCAGGCACGGCCACCTCGCC
CTTCATCCGCCCTACCCCCTTCACTCCTCTTTTTTCCACATCTTTGGCGG
ACTAAATACCACTAGTGACACCCTCCCCTCGTCCTTCCTCTCCGACACCT
TCCGATTTGATCTCCCCCCCGTCGAGGCATGGACCGAGGAAGACCTACCC
CTCTCTCCATCGGTCCCTGGACCTCGGGCCTACGCGGGGGTGGGGCATGG
CGAGAGACACACGCTAGTAGTGGGAGGCTTTGCAGGCTTCACCGGTGACA
CGGACGACCGGCTGCTGAATGATGTGTGGGTGTTTCGACATGGGGAGGCA
GTGGAGGAGGGCGTGAAGGAGGGAGGGTTGAATGGCGGGAGCGAGGAAGT
TGCGAGGGAAGATCGTCGGCAACATTTGCGGTGA
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Synonyms
Publications