NO14G02680, NO14G02680 (gene) Nannochloropsis oceanica

Overview
NameNO14G02680
Unique NameNO14G02680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1677
Alignment locationchr14:790750..792426 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:790750..792426 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO14G02680 vs. NCBI_GenBank
Match: XP_005854631.1 (hypothetical protein NGA_0169500 [Nannochloropsis gaditana CCMP526] >EKU21729.1 hypothetical protein NGA_0169500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 190.7 bits (483), Expect = 5.200e-45
Identity = 104/183 (56.83%), Postives = 137/183 (74.86%), Query Frame = 0 
Query:    1 MEGFSGLRATVQATMETHCPEVARWDKDMTAEGQNGESGQGVLPTLRSAEDALGRAQARQTRVARLIDLQSRYRHDTSVLKDRVKALFEEALEDEESQTDRRREEMHARSKAVFDGVKAMKERVRQAQLAYRKLGISTTVAPAGGGRGGIGPEAGSVQEERLSELQRQIRGVGERLARVRYVA 184
            MEGF+ L+ATVQAT+ETHCPEVARWDKDM+ EGQ+ E  +GVLPTLR AE+AL  A  R +RV+ L+D+Q+RYR D   L +RVKAL+E+A E++ + TD +R+EMHARS AVF+ VKA+ +RVR+AQ AYR+LGI       GGG G        V+ E LS L++++R +GERL ++RYVA
Sbjct:    1 MEGFAKLQATVQATIETHCPEVARWDKDMSGEGQD-EGSRGVLPTLRGAEEALQSAHVRYSRVSHLVDVQNRYRQDCGKLSERVKALYEQAAEEDANGTDLKRQEMHARSMAVFEKVKALTDRVRRAQEAYRRLGIDV----RGGGGGEDEGLGKGVEGESLSHLRQEVRDLGERLRQIRYVA 178
[Close]
BLAST of NO14G02680 vs. NCBI_GenBank
Match: EWM24546.1 (hypothetical protein Naga_100260g6 [Nannochloropsis gaditana])

HSP 1 Score: 190.7 bits (483), Expect = 5.200e-45
Identity = 104/183 (56.83%), Postives = 137/183 (74.86%), Query Frame = 0 
Query:    1 MEGFSGLRATVQATMETHCPEVARWDKDMTAEGQNGESGQGVLPTLRSAEDALGRAQARQTRVARLIDLQSRYRHDTSVLKDRVKALFEEALEDEESQTDRRREEMHARSKAVFDGVKAMKERVRQAQLAYRKLGISTTVAPAGGGRGGIGPEAGSVQEERLSELQRQIRGVGERLARVRYVA 184
            MEGF+ L+ATVQAT+ETHCPEVARWDKDM+ EGQ+ E  +GVLPTLR AE+AL  A  R +RV+ L+D+Q+RYR D   L +RVKAL+E+A E++ + TD +R+EMHARS AVF+ VKA+ +RVR+AQ AYR+LGI       GGG G        V+ E LS L++++R +GERL ++RYVA
Sbjct:    1 MEGFAKLQATVQATIETHCPEVARWDKDMSGEGQD-EGSRGVLPTLRGAEEALQSAHVRYSRVSHLVDVQNRYRQDCGKLSERVKALYEQAAEEDANGTDLKRQEMHARSMAVFEKVKALTDRVRRAQEAYRRLGIDV----RGGGGGEDEGLGKGVEGESLSHLRQEVRDLGERLRQIRYVA 178
The following BLAST results are available for this feature:
BLAST of NO14G02680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854631.15.200e-4556.83hypothetical protein NGA_0169500 [Nannochloropsis ... [more]
EWM24546.15.200e-4556.83hypothetical protein Naga_100260g6 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002490NSK002490Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02680.1NO14G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|39005gene_5847Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100260g6gene5934Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02680.1NO14G02680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02680 ID=NO14G02680|Name=NO14G02680|organism=Nannochloropsis oceanica|type=gene|length=1677bp
CTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCCTCGCTTG
AGGACGACTGCTGCGCTTCCGACTCGCTGCTCTCCACCGAGGAATCGCTC
TCGCATTCCACTTCGACCTTCTTTTTCTTACCACTGCTGGCGTTGCCCTT
GGACGGCATGGTTCGTTCTGTGGTGGGGTTGAGATGGGCGAAAATGAGGG
AGGAGGTACGTAGGGTTTGATTGACAAGATCGAAAGGGGGCTTCGGTTGC
GGCAAATTCATAAACGTTGCTGTTATAGAAATGGGCAGCGAGGATGTGCT
GTGTGGATGTCCCTATAAAGGTCGATGGGATGGGGAGGGAGGAGGCACAG
TCTGAAGAGAAACATCGCCGGTCCCAGTGAGCGAGAACGTTTATGTCGCT
GCAAAAGAGGAGAGAAGCCCAAGCATTGGGTGCAGATTGATGGTTGGACT
GAGCCTGTGCATAATGAGGGTGATGGAGATGCTCCTGTAAGCTAAGTGTG
TGAGACGTAGTGTTTTGACGAAGGAAAAAAAGTAGAAGAGCCTCTAGGGA
AGAGACTCGGGATGGGAGGCCGTCTCGATGACCGCGGCGGCATCATCTTC
ATTAGCACAATACATAGCCGTTTTGACACCCATTCACAACCACAACCACA
CAACCCTCCACAAACACTCAACTAAATCATACTATTGCAGTCCTGGGGCC
ACGCCCCCTTCTCCTTCCACTCTCCATCTTCGTTGAGGATAGCCTTTCCC
CTGCACTACCAGCACAAGCTCTACACGGACAGGATGGAGGGGTTCTCGGG
ATTGCGAGCCACGGTGCAAGCCACGATGGAGACGCATTGTCCCGAGgtaa
gcccctcccttctctgtttccctcccttccttgctctccctgccgtccgg
gcgattggggctgtcggtatgaacaacgattgtctggattgtgaggacgg
ccatttctactcctttccctgcgtttgctccccatttatatcactcccac
ccaccttcctcctctcctcacaaacccccacttcttcccccgcccagGTC
GCGCGTTGGGACAAGGACATGACCGCGGAAGGCCAGAACGGCGAAAGCGG
GCAGGGGGTATTACCCACCTTGCGCTCTGCCGAGGACGCCTTGGGACGGG
CCCAGGCACGACAGACACGCGTGGCTCGTTTGATAGACTTGCAGAGTCGG
TACCGACATGACACGTCCGTATTGAAGGATCGGGTGAAAGCGCTGTTCGA
AGAGGCGTTGGAGGACGAGGAGAGCCAGACAGACAGGAGGAGGGAGGAGA
TGCATGCTCGATCCAAGGCCGTGTTTGATGGAGTCAAAGCTATGAAAGAG
CGCGTACGACAAGCGCAGCTGGCGTATCGAAAATTGGGGATCAGCACCAC
AGTCGCGCCTGCAGGAGGAGGAAGAGGGGGGATAGGACCAGAAGCGGGGT
CGGTGCAGGAGGAGAGATTAAGTGAGTTGCAAAGGCAGATTAGGGGTGTG
GGGGAACGGCTTGCAAGGGTGAGGTATGTGGCGGAGGAGGAGGAAGAGGC
GAGGAGGCTGAGGGGGGAAGGGGGGGAAGAGGAGGAGGAGGGGGAAGAGG
AGGAGGAGGGGGGAGAGGAGGAGGCGGATGGAAGCCCCTATCGATCGCCG
ATCAGTGGGGCGTATGGGACAGAATGA
back to top

protein sequence of NO14G02680.1

>NO14G02680.1-protein ID=NO14G02680.1-protein|Name=NO14G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MEGFSGLRATVQATMETHCPEVARWDKDMTAEGQNGESGQGVLPTLRSAE
DALGRAQARQTRVARLIDLQSRYRHDTSVLKDRVKALFEEALEDEESQTD
RRREEMHARSKAVFDGVKAMKERVRQAQLAYRKLGISTTVAPAGGGRGGI
GPEAGSVQEERLSELQRQIRGVGERLARVRYVAEEEEEARRLRGEGGEEE
EEGEEEEEGGEEEADGSPYRSPISGAYGTE*
back to top
Synonyms
Publications