NO14G02680.1, NO14G02680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02680.1
Unique NameNO14G02680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr14:790750..792426 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:790750..792426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02680.1 vs.
Match: EWM24546.1 (hypothetical protein Naga_100260g6 [Nannochloropsis gaditana])

HSP 1 Score: 195.7 bits (496), Expect = 1.600e-46
Identity = 122/230 (53.04%), Postives = 161/230 (70.00%), Query Frame = 0 
Query:    1 MEGFSGLRATVQATMETHCPEVARWDKDMTAEGQNGESGQGVLPTLRSAEDALGRAQARQTRVARLIDLQSRYRHDTSVLKDRVKALFEEALEDEESQTDRRREEMHARSKAVFDGVKAMKERVRQAQLAYRKLGISTTVAPAGGGRGGIGPEAGSVQEERLSELQRQIRGVGERLARVRYVAEEEEEARRLRGEGGEEEEEGEEEEEGGEEEADGSPYRSPISGAYGTE 231
            MEGF+ L+ATVQAT+ETHCPEVARWDKDM+ EGQ+ E  +GVLPTLR AE+AL  A  R +RV+ L+D+Q+RYR D   L +RVKAL+E+A E++ + TD +R+EMHARS AVF+ VKA+ +RVR+AQ AYR+LGI       GGG G        V+ E LS L++++R +GERL ++RYVA EE     + G+ GEEEEE +E+E       D  P   P + AYGT+
Sbjct:    1 MEGFAKLQATVQATIETHCPEVARWDKDMSGEGQD-EGSRGVLPTLRGAEEALQSAHVRYSRVSHLVDVQNRYRQDCGKLSERVKALYEQAAEEDANGTDLKRQEMHARSMAVFEKVKALTDRVRRAQEAYRRLGIDVR----GGGGGEDEGLGKGVEGESLSHLRQEVRDLGERLRQIRYVAGEE---GLVNGQEGEEEEEKDEDE-------DAPP---PPATAYGTD 212
The following BLAST results are available for this feature:
BLAST of NO14G02680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24546.11.600e-4653.04hypothetical protein Naga_100260g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02680NO14G02680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02680.1NO14G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02680.1.cds1NO14G02680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02680.1.cds2NO14G02680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02680.1 ID=NO14G02680.1|Name=NO14G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp
CTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCCTCGCTTG
AGGACGACTGCTGCGCTTCCGACTCGCTGCTCTCCACCGAGGAATCGCTC
TCGCATTCCACTTCGACCTTCTTTTTCTTACCACTGCTGGCGTTGCCCTT
GGACGGCATGGTTCGTTCTGTGGTGGGGTTGAGATGGGCGAAAATGAGGG
AGGAGGTACGTAGGGTTTGATTGACAAGATCGAAAGGGGGCTTCGGTTGC
GGCAAATTCATAAACGTTGCTGTTATAGAAATGGGCAGCGAGGATGTGCT
GTGTGGATGTCCCTATAAAGGTCGATGGGATGGGGAGGGAGGAGGCACAG
TCTGAAGAGAAACATCGCCGGTCCCAGTGAGCGAGAACGTTTATGTCGCT
GCAAAAGAGGAGAGAAGCCCAAGCATTGGGTGCAGATTGATGGTTGGACT
GAGCCTGTGCATAATGAGGGTGATGGAGATGCTCCTGTAAGCTAAGTGTG
TGAGACGTAGTGTTTTGACGAAGGAAAAAAAGTAGAAGAGCCTCTAGGGA
AGAGACTCGGGATGGGAGGCCGTCTCGATGACCGCGGCGGCATCATCTTC
ATTAGCACAATACATAGCCGTTTTGACACCCATTCACAACCACAACCACA
CAACCCTCCACAAACACTCAACTAAATCATACTATTGCAGTCCTGGGGCC
ACGCCCCCTTCTCCTTCCACTCTCCATCTTCGTTGAGGATAGCCTTTCCC
CTGCACTACCAGCACAAGCTCTACACGGACAGGATGGAGGGGTTCTCGGG
ATTGCGAGCCACGGTGCAAGCCACGATGGAGACGCATTGTCCCGAGGTCG
CGCGTTGGGACAAGGACATGACCGCGGAAGGCCAGAACGGCGAAAGCGGG
CAGGGGGTATTACCCACCTTGCGCTCTGCCGAGGACGCCTTGGGACGGGC
CCAGGCACGACAGACACGCGTGGCTCGTTTGATAGACTTGCAGAGTCGGT
ACCGACATGACACGTCCGTATTGAAGGATCGGGTGAAAGCGCTGTTCGAA
GAGGCGTTGGAGGACGAGGAGAGCCAGACAGACAGGAGGAGGGAGGAGAT
GCATGCTCGATCCAAGGCCGTGTTTGATGGAGTCAAAGCTATGAAAGAGC
GCGTACGACAAGCGCAGCTGGCGTATCGAAAATTGGGGATCAGCACCACA
GTCGCGCCTGCAGGAGGAGGAAGAGGGGGGATAGGACCAGAAGCGGGGTC
GGTGCAGGAGGAGAGATTAAGTGAGTTGCAAAGGCAGATTAGGGGTGTGG
GGGAACGGCTTGCAAGGGTGAGGTATGTGGCGGAGGAGGAGGAAGAGGCG
AGGAGGCTGAGGGGGGAAGGGGGGGAAGAGGAGGAGGAGGGGGAAGAGGA
GGAGGAGGGGGGAGAGGAGGAGGCGGATGGAAGCCCCTATCGATCGCCGA
TCAGTGGGGCGTATGGGACAGAATGA
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protein sequence of NO14G02680.1

>NO14G02680.1-protein ID=NO14G02680.1-protein|Name=NO14G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MEGFSGLRATVQATMETHCPEVARWDKDMTAEGQNGESGQGVLPTLRSAE
DALGRAQARQTRVARLIDLQSRYRHDTSVLKDRVKALFEEALEDEESQTD
RRREEMHARSKAVFDGVKAMKERVRQAQLAYRKLGISTTVAPAGGGRGGI
GPEAGSVQEERLSELQRQIRGVGERLARVRYVAEEEEEARRLRGEGGEEE
EEGEEEEEGGEEEADGSPYRSPISGAYGTE*
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mRNA from alignment at chr14:790750..792426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02680.1 ID=NO14G02680.1|Name=NO14G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at chr14:790750..792426- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCCTCGCTTG
AGGACGACTGCTGCGCTTCCGACTCGCTGCTCTCCACCGAGGAATCGCTC
TCGCATTCCACTTCGACCTTCTTTTTCTTACCACTGCTGGCGTTGCCCTT
GGACGGCATGGTTCGTTCTGTGGTGGGGTTGAGATGGGCGAAAATGAGGG
AGGAGGTACGTAGGGTTTGATTGACAAGATCGAAAGGGGGCTTCGGTTGC
GGCAAATTCATAAACGTTGCTGTTATAGAAATGGGCAGCGAGGATGTGCT
GTGTGGATGTCCCTATAAAGGTCGATGGGATGGGGAGGGAGGAGGCACAG
TCTGAAGAGAAACATCGCCGGTCCCAGTGAGCGAGAACGTTTATGTCGCT
GCAAAAGAGGAGAGAAGCCCAAGCATTGGGTGCAGATTGATGGTTGGACT
GAGCCTGTGCATAATGAGGGTGATGGAGATGCTCCTGTAAGCTAAGTGTG
TGAGACGTAGTGTTTTGACGAAGGAAAAAAAGTAGAAGAGCCTCTAGGGA
AGAGACTCGGGATGGGAGGCCGTCTCGATGACCGCGGCGGCATCATCTTC
ATTAGCACAATACATAGCCGTTTTGACACCCATTCACAACCACAACCACA
CAACCCTCCACAAACACTCAACTAAATCATACTATTGCAGTCCTGGGGCC
ACGCCCCCTTCTCCTTCCACTCTCCATCTTCGTTGAGGATAGCCTTTCCC
CTGCACTACCAGCACAAGCTCTACACGGACAGGATGGAGGGGTTCTCGGG
ATTGCGAGCCACGGTGCAAGCCACGATGGAGACGCATTGTCCCGAGGTAA
GCCCCTCCCTTCTCTGTTTCCCTCCCTTCCTTGCTCTCCCTGCCGTCCGG
GCGATTGGGGCTGTCGGTATGAACAACGATTGTCTGGATTGTGAGGACGG
CCATTTCTACTCCTTTCCCTGCGTTTGCTCCCCATTTATATCACTCCCAC
CCACCTTCCTCCTCTCCTCACAAACCCCCACTTCTTCCCCCGCCCAGGTC
GCGCGTTGGGACAAGGACATGACCGCGGAAGGCCAGAACGGCGAAAGCGG
GCAGGGGGTATTACCCACCTTGCGCTCTGCCGAGGACGCCTTGGGACGGG
CCCAGGCACGACAGACACGCGTGGCTCGTTTGATAGACTTGCAGAGTCGG
TACCGACATGACACGTCCGTATTGAAGGATCGGGTGAAAGCGCTGTTCGA
AGAGGCGTTGGAGGACGAGGAGAGCCAGACAGACAGGAGGAGGGAGGAGA
TGCATGCTCGATCCAAGGCCGTGTTTGATGGAGTCAAAGCTATGAAAGAG
CGCGTACGACAAGCGCAGCTGGCGTATCGAAAATTGGGGATCAGCACCAC
AGTCGCGCCTGCAGGAGGAGGAAGAGGGGGGATAGGACCAGAAGCGGGGT
CGGTGCAGGAGGAGAGATTAAGTGAGTTGCAAAGGCAGATTAGGGGTGTG
GGGGAACGGCTTGCAAGGGTGAGGTATGTGGCGGAGGAGGAGGAAGAGGC
GAGGAGGCTGAGGGGGGAAGGGGGGGAAGAGGAGGAGGAGGGGGAAGAGG
AGGAGGAGGGGGGAGAGGAGGAGGCGGATGGAAGCCCCTATCGATCGCCG
ATCAGTGGGGCGTATGGGACAGAATGA
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Coding sequence (CDS) from alignment at chr14:790750..792426-

>NO14G02680.1 ID=NO14G02680.1|Name=NO14G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr14:790750..792426- (Nannochloropsis oceanica)
ATGGAGGGGTTCTCGGGATTGCGAGCCACGGTGCAAGCCACGATGGAGAC
GCATTGTCCCGAGGTCGCGCGTTGGGACAAGGACATGACCGCGGAAGGCC
AGAACGGCGAAAGCGGGCAGGGGGTATTACCCACCTTGCGCTCTGCCGAG
GACGCCTTGGGACGGGCCCAGGCACGACAGACACGCGTGGCTCGTTTGAT
AGACTTGCAGAGTCGGTACCGACATGACACGTCCGTATTGAAGGATCGGG
TGAAAGCGCTGTTCGAAGAGGCGTTGGAGGACGAGGAGAGCCAGACAGAC
AGGAGGAGGGAGGAGATGCATGCTCGATCCAAGGCCGTGTTTGATGGAGT
CAAAGCTATGAAAGAGCGCGTACGACAAGCGCAGCTGGCGTATCGAAAAT
TGGGGATCAGCACCACAGTCGCGCCTGCAGGAGGAGGAAGAGGGGGGATA
GGACCAGAAGCGGGGTCGGTGCAGGAGGAGAGATTAAGTGAGTTGCAAAG
GCAGATTAGGGGTGTGGGGGAACGGCTTGCAAGGGTGAGGTATGTGGCGG
AGGAGGAGGAAGAGGCGAGGAGGCTGAGGGGGGAAGGGGGGGAAGAGGAG
GAGGAGGGGGAAGAGGAGGAGGAGGGGGGAGAGGAGGAGGCGGATGGAAG
CCCCTATCGATCGCCGATCAGTGGGGCGTATGGGACAGAATGA
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Synonyms
Publications