NO14G02640, NO14G02640 (gene) Nannochloropsis oceanica

Overview
NameNO14G02640
Unique NameNO14G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1566
Alignment locationchr14:782887..784452 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:782887..784452 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014952DUF1823
Homology
BLAST of NO14G02640 vs. NCBI_GenBank
Match: XP_005853717.1 (hypothetical protein NGA_0501300 [Nannochloropsis gaditana CCMP526] >EKU22641.1 hypothetical protein NGA_0501300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 378.6 bits (971), Expect = 1.700e-101
Identity = 193/271 (71.22%), Postives = 218/271 (80.44%), Query Frame = 0
Query:   18 CLGLMAQKCSHAFLQTRLPF-----TLSCGSYGLQAYTPPSLHSSSSPLLRRRARLSTSLAAGPTEGAPTDIPIPASSDDVVFEGPIKTENTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIENKEAVTSVTREGETSEQLAKKMVY 284
            CLGL++ + + AFL  R PF      L+C  +G    TP    SS+ PL   RA   T    GPTEG     P+P S + +V EGPI+ ++TERF+ DIS+PEP+AAELEETNLVKIVKL CKDEEVNWLAWKCLGYRYVPTEGRWDN+ VFPKWRARYP+PPDLVGVTRIYEKEVD PVKRANTALVRSVPKMYKQSLKELLAPYGFKG+K AELTPNRTRRAQVCNWLLY+KR+LWG+SLE L++ KE VT VTREGE+ EQLAKKMVY
Sbjct:   19 CLGLVSHR-TRAFLLPRQPFLGFSQKLAC--WGSHPLTPSRRISSALPL---RAASDT----GPTEGNSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 279          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: EWM24548.1 (Protein of unknown function DUF1823 [Nannochloropsis gaditana])

HSP 1 Score: 377.1 bits (967), Expect = 4.800e-101
Identity = 193/271 (71.22%), Postives = 217/271 (80.07%), Query Frame = 0
Query:   18 CLGLMAQKCSHAFLQTRLPF-----TLSCGSYGLQAYTPPSLHSSSSPLLRRRARLSTSLAAGPTEGAPTDIPIPASSDDVVFEGPIKTENTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIENKEAVTSVTREGETSEQLAKKMVY 284
            CLGL++   + AFL  R PF      L+C  +G    TP    SS+ PL   RA   T    GPTEG     P+P S + +V EGPI+ ++TERF+ DIS+PEP+AAELEETNLVKIVKL CKDEEVNWLAWKCLGYRYVPTEGRWDN+ VFPKWRARYP+PPDLVGVTRIYEKEVD PVKRANTALVRSVPKMYKQSLKELLAPYGFKG+K AELTPNRTRRAQVCNWLLY+KR+LWG+SLE L++ KE VT VTREGE+ EQLAKKMVY
Sbjct:   38 CLGLVSHG-TRAFLLPRQPFLGFSQKLAC--WGSHPLTPSRRVSSALPL---RAASDT----GPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 298          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: XP_002183936.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44605.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 187.2 bits (474), Expect = 7.100e-44
Identity = 89/178 (50.00%), Postives = 120/178 (67.42%), Query Frame = 0
Query:   86 IPASSDDVVFEGPIKTENTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIENKEA 264
            +PA+  + + EGP+   +   FI      EP   EL   NL++I+++ C D EVN L WKCLGYR+ P    W+N   FPKW+ +YP PPDL+G+ RIY  E+D P  RAN A+VRS+P   KQSLK  L PYGF G++ AELTPN+TRRAQ  NWLLYF+ EL+G ++E+L + ++A
Sbjct:  119 LPAADPNYMNEGPVGEND---FILSRD-GEPKELELSNENLLRILRVECSDLEVNTLVWKCLGYRFDPHANLWNNDKCFPKWKEKYPTPPDLIGMQRIYSPEIDKPSLRANQAIVRSIPVDNKQSLKTHLKPYGFTGYQFAELTPNKTRRAQCANWLLYFREELFGFTVEELRKRRQA 292          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: CBJ27905.1 (Mitochondrial TOM complex subunit, Tom20 homolog [Ectocarpus siliculosus])

HSP 1 Score: 181.0 bits (458), Expect = 5.100e-42
Identity = 103/232 (44.40%), Postives = 134/232 (57.76%), Query Frame = 0
Query:   52 PSLHSSSSPLLRRRARLSTSLAAGP-----TEGAPTDIPIPASSDDVVFEGPIKTE-NTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIENK-EAVTSVTREGETSEQ 277
            P++ S++S    R AR ST+ AA P      +   T  P P+           K   N +         EP A EL   NL+KIV     DEEVN + WKCLGYRY   E  W    VFP+W A YPEPPDL+GVTR+YEK VD PV +A  AL+R++P  +K+ + E L P GF G  + ELTPNRTRRAQV N+LLYF+ +LWGV LE++   + E + +  RE E  ++
Sbjct:   30 PTVPSAAS----RPARTSTTTAAAPEGDASAQEGTTATPPPSLDRSAPLSFIAKNNVNLDGEFLSNREGEPTAEELSNENLIKIVAEKSTDEEVNVVVWKCLGYRYDAGENAWKAVKVFPRWEAMYPEPPDLLGVTRVYEKSVDKPVLKAVQALIRAIPSEHKRCIVEQLRPIGFTGLTLDELTPNRTRRAQVTNFLLYFRDQLWGVPLEEVERRRVERIEAAKREAEAEKE 257          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: GAX23845.1 (hypothetical protein FisN_20Hh049 [Fistulifera solaris])

HSP 1 Score: 176.0 bits (445), Expect = 1.600e-40
Identity = 83/143 (58.04%), Postives = 102/143 (71.33%), Query Frame = 0
Query:  116 PIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRW-DNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKL 258
            P   EL   N+++IVK  C D EVN L WKCLGYRY   E  W DN+ VFP WR +YP PPD +G+ R+YEKEVD P  RAN ALVRSVP   KQSLK  L P G+KG++  ELTPN+TRRAQ  NWL++++ EL+G +LE+L
Sbjct:   88 PTLEELSNANMLQIVKCQCTDLEVNTLVWKCLGYRYDEKEQLWNDNTLVFPNWREKYPTPPDFLGMRRVYEKEVDQPSLRANQALVRSVPVHAKQSLKTALKPEGWKGYQYKELTPNKTRRAQCANWLIFYRNELFGYTLEEL 230          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: EJK61870.1 (hypothetical protein THAOC_17560 [Thalassiosira oceanica])

HSP 1 Score: 175.3 bits (443), Expect = 2.800e-40
Identity = 79/144 (54.86%), Postives = 99/144 (68.75%), Query Frame = 0
Query:  116 PIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIE 260
            P A EL    ++KIVK+ C D EVN L WKCLGYR+    G W    VFPKWR R+P PPD +G+ R+Y +EVD P   AN ALVRS+P   KQ++K  L P G+KG+K   LTPN+TRRAQ  NWL++F+ EL+G SLE+L E
Sbjct:  112 PTAEELSNEQMLKIVKIECTDLEVNTLVWKCLGYRFDEGAGEWQPDEVFPKWRERFPTPPDFIGMQRVYSREVDQPSLHANQALVRSIPAENKQNIKAALTPLGWKGYKYKGLTPNKTRRAQCANWLVFFREELFGYSLEELRE 255          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: GAX18284.1 (hypothetical protein FisN_20Lh049 [Fistulifera solaris])

HSP 1 Score: 174.5 bits (441), Expect = 4.700e-40
Identity = 81/143 (56.64%), Postives = 102/143 (71.33%), Query Frame = 0
Query:  116 PIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRW-DNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKL 258
            P   EL   N+++IVK  C D EVN L WKCLGYRY   E  W DN+ VFP WR +YP PPD +G+ R+YEK++D P  RAN ALVRSVP   KQSLK  L P G+KG++  ELTPN+TRRAQ  NWL++++ EL+G +LE+L
Sbjct:   91 PTLEELSNANMLQIVKCQCTDLEVNTLVWKCLGYRYDEKEQLWNDNALVFPNWREKYPTPPDFLGMRRVYEKDIDQPSLRANQALVRSVPVHAKQSLKTALKPEGWKGYQYKELTPNKTRRAQCANWLIFYRNELFGYTLEEL 233          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: XP_002290375.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92127.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 174.1 bits (440), Expect = 6.200e-40
Identity = 84/176 (47.73%), Postives = 112/176 (63.64%), Query Frame = 0
Query:   86 IPASSDDVVFEGPIKTENTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIENK 262
            +PA       +GP+     E+F+   S P P   EL    ++KIVK  C D E N L WKCLGYR+      W    VFP W+ R+P PPDL+G+ R+YE+EVD P  R+N ALVRS+P   KQSLK  L P G+KGF+  ELTPN+TRRAQ  NWL++++ EL+G ++E+L E +
Sbjct:   73 LPALDPKYSVKGPV---GEEKFVLTRSGP-PTKEELSNEQMLKIVKSECSDLEANTLVWKCLGYRFDEESEEWSPKEVFPNWKERFPTPPDLIGMRRVYEREVDQPSLRSNQALVRSIPPDNKQSLKTHLKPLGWKGFQYKELTPNKTRRAQCANWLIFYREELFGYTVEELRERR 244          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: XP_005824700.1 (hypothetical protein GUITHDRAFT_154910 [Guillardia theta CCMP2712] >EKX37720.1 hypothetical protein GUITHDRAFT_154910 [Guillardia theta CCMP2712])

HSP 1 Score: 162.5 bits (410), Expect = 1.900e-36
Identity = 82/176 (46.59%), Postives = 107/176 (60.80%), Query Frame = 0
Query:  107 FICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIENKEAVTSVTREGETSEQLAKKMV 283
            F+ D   PE    EL    L+ I++    D+ VN L WKCLGY     +G + N NVFPKWR +YP PPDL+GVTR Y  E+D P ++AN  LV S+P  YKQ +KE L P GF GFK+ ELTPN+TRRAQ  NWLL+++  L G ++++L           R  ET   +A K+V
Sbjct:    5 FVLDTFDPEEEEDELSNERLLTIIRSETTDQFVNELVWKCLGYER-KEDGSYINDNVFPKWREKYPSPPDLIGVTRNYTYEIDRPCQKANQQLVASIPMKYKQGVKEHLRPLGFTGFKLEELTPNKTRRAQCVNWLLFYREALRGKTVDQL--------RAERAAETGNDVAPKVV 171          
BLAST of NO14G02640 vs. NCBI_GenBank
Match: KOO44196.1 (hypothetical protein Ctob_010271 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 156.8 bits (395), Expect = 1.000e-34
Identity = 76/151 (50.33%), Postives = 101/151 (66.89%), Query Frame = 0
Query:  112 SIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIENKE 263
            S+P P   +L +  +++IV     D EVN LAWK LGY +    G WD S VFP WR ++P+PPDLVGVTR YE+E+D PV RA  +L +SV K +K +L+  L P G+ G+K+  LTPN TRRAQV NWLLY++  L GV +E+L   +E
Sbjct:  324 SLPPP--DDLADEVMLRIVMQEMTDTEVNALAWKYLGYHFQEATGTWDTSAVFPNWRQKFPQPPDLVGVTRKYEREIDEPVLRAVQSLQQSVAKEHKNNLRAFLKPLGWNGYKMDGLTPNMTRRAQVANWLLYYREALHGVPVEELRRRRE 472          
The following BLAST results are available for this feature:
BLAST of NO14G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853717.11.700e-10171.22hypothetical protein NGA_0501300 [Nannochloropsis ... [more]
EWM24548.14.800e-10171.22Protein of unknown function DUF1823 [Nannochlorops... [more]
XP_002183936.17.100e-4450.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ27905.15.100e-4244.40Mitochondrial TOM complex subunit, Tom20 homolog [... [more]
GAX23845.11.600e-4058.04hypothetical protein FisN_20Hh049 [Fistulifera sol... [more]
EJK61870.12.800e-4054.86hypothetical protein THAOC_17560 [Thalassiosira oc... [more]
GAX18284.14.700e-4056.64hypothetical protein FisN_20Lh049 [Fistulifera sol... [more]
XP_002290375.16.200e-4047.73predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_005824700.11.900e-3646.59hypothetical protein GUITHDRAFT_154910 [Guillardia... [more]
KOO44196.11.000e-3450.33hypothetical protein Ctob_010271 [Chrysochromulina... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002485NSK002485Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02640.1NO14G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590523gene_5843Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100260g10gene5930Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02640.1NO14G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02640 ID=NO14G02640|Name=NO14G02640|organism=Nannochloropsis oceanica|type=gene|length=1566bp
AGGTGAATTCAAGTAAGGCAAGTGCGCAGCTATTGCAGTCGTTTTGGGGG
GCACTCCAAGGCGTAAAAAAGGATCGTCGGGAGCGGCTTTCTCCTTCTAG
TTAGTTGCAGCAGCATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTA
CCCTTACTTATTTTGTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGC
CTTCCTGCAGACCCGCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTC
TACAAGCCTACACCCCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTC
CGCCGCCGTGCCCGTCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGG
CGCCCCAACCGATATTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCG
AAGGACCGATTAAGACGGAGAACACCGAGCGATTCATTTGTGATATCTCG
ATCCCGGAGCCCATCGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGAT
TGTAAAGCTGGCGTGTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGT
GTCTCGgtgcgttggagggggcgtgagagaatgagggagggagagatggt
ggctggccactgcatttaagatatggccgaagatcggcccgtagtaccca
ttcactttctaagctctttatttctcaggaatgcccacttatagaaaccc
actctttatcaatcccttttccctacgccagGCTACCGCTACGTCCCCAC
GGAAGGCCGGTGGGACAACAGTAACGTCTTCCCCAAGTGGCGCGCCCGCT
ACCCCGAGCCGCCAGACCTAGTGGGCGTCACCCGCATCTACGAGAAgtaa
gcttttaatgaggggtgtgaagtaatgtgctttcgaatcagataagatat
tcgtatcgaggaatgcgtgtatggcgctgtagtcgagtctctttcctcaa
tatcctttttagtttctcttcacatcccacttcgttctccctgtcactta
ctcgctttctccctttccttgtatccccctcattgtaaacagAGAGGTGG
ACGCCCCTGTAAAGCGTGCTAATACTGCCCTTGTTCGGTCTGTCCCCAAG
ATGTACAAACAATCATTGAAAGAACTCCTGGCACCGTATGGCTTCAAAGG
TTTTAAAATTGCGGAGCTCACCCCGAATCGAACACGCAGGGCCCAAGTAT
GTAACTGGTTATTGTACTTCAAGAGGGAATTGTGGGGGGTGAGTCTGGAA
AAACTGATTGAGAACAAGGAGGCTGTCACGTCGGTGACGAGGGAGGGAGA
GACCTCTGAGCAGTTGGCCAAGAAAATGGTTTATTAGATGAGAGGATAAA
TTTGCTTCGAATTAGTAGTGAGATGAGAGTTTTTCTAAGAAATGCATGAT
GACATATGTATGTTGACTTTATTTTGATGTGCGGGGATTAAGTGAACGGG
GGTAGGATGATGGGACGAGTTGGATTGCAGCAAGGCGGTGTGATTGATTT
CGGGGAAACGAAACTTGAAAAAGACGACAATAAATGTGACAAAAAGAATG
AGCGCAACAACAACGA
back to top

protein sequence of NO14G02640.1

>NO14G02640.1-protein ID=NO14G02640.1-protein|Name=NO14G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MQRHHDVAGTSLPLLILCLGLMAQKCSHAFLQTRLPFTLSCGSYGLQAYT
PPSLHSSSSPLLRRRARLSTSLAAGPTEGAPTDIPIPASSDDVVFEGPIK
TENTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYR
YVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALV
RSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELW
GVSLEKLIENKEAVTSVTREGETSEQLAKKMVY*
back to top
Synonyms
Publications