NO14G02640.1, NO14G02640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02640.1
Unique NameNO14G02640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1195
Alignment locationchr14:782887..784452 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:782887..784452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G02640.1 vs.
Match: XP_005853717.1 (hypothetical protein NGA_0501300 [Nannochloropsis gaditana CCMP526]; EKU22641.1 hypothetical protein NGA_0501300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 378.6 bits (971), Expect = 1.700e-101
Identity = 193/271 (71.22%), Postives = 218/271 (80.44%), Query Frame = 0 
Query:   18 CLGLMAQKCSHAFLQTRLPFT-----LSCGSYGLQAYTPPSLHSSSSPLLRRRARLSTSLAAGPTEGAPTDIPIPASSDDVVFEGPIKTENTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYRYVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALVRSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELWGVSLEKLIENKEAVTSVTREGETSEQLAKKMVY 284
            CLGL++ + + AFL  R PF      L+C  +G    TP    SS+ PL   RA   T    GPTEG     P+P S + +V EGPI+ ++TERF+ DIS+PEP+AAELEETNLVKIVKL CKDEEVNWLAWKCLGYRYVPTEGRWDN+ VFPKWRARYP+PPDLVGVTRIYEKEVD PVKRANTALVRSVPKMYKQSLKELLAPYGFKG+K AELTPNRTRRAQVCNWLLY+KR+LWG+SLE L++ KE VT VTREGE+ EQLAKKMVY
Sbjct:   19 CLGLVSHR-TRAFLLPRQPFLGFSQKLAC--WGSHPLTPSRRISSALPL---RAASDT----GPTEGNSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 279
The following BLAST results are available for this feature:
BLAST of NO14G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853717.11.700e-10171.22hypothetical protein NGA_0501300 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02640NO14G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02640.1NO14G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02640.1.cds1NO14G02640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02640.1.cds2NO14G02640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02640.1.cds3NO14G02640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02640.1 ID=NO14G02640.1|Name=NO14G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp
AGGTGAATTCAAGTAAGGCAAGTGCGCAGCTATTGCAGTCGTTTTGGGGG
GCACTCCAAGGCGTAAAAAAGGATCGTCGGGAGCGGCTTTCTCCTTCTAG
TTAGTTGCAGCAGCATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTA
CCCTTACTTATTTTGTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGC
CTTCCTGCAGACCCGCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTC
TACAAGCCTACACCCCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTC
CGCCGCCGTGCCCGTCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGG
CGCCCCAACCGATATTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCG
AAGGACCGATTAAGACGGAGAACACCGAGCGATTCATTTGTGATATCTCG
ATCCCGGAGCCCATCGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGAT
TGTAAAGCTGGCGTGTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGT
GTCTCGGCTACCGCTACGTCCCCACGGAAGGCCGGTGGGACAACAGTAAC
GTCTTCCCCAAGTGGCGCGCCCGCTACCCCGAGCCGCCAGACCTAGTGGG
CGTCACCCGCATCTACGAGAAAGAGGTGGACGCCCCTGTAAAGCGTGCTA
ATACTGCCCTTGTTCGGTCTGTCCCCAAGATGTACAAACAATCATTGAAA
GAACTCCTGGCACCGTATGGCTTCAAAGGTTTTAAAATTGCGGAGCTCAC
CCCGAATCGAACACGCAGGGCCCAAGTATGTAACTGGTTATTGTACTTCA
AGAGGGAATTGTGGGGGGTGAGTCTGGAAAAACTGATTGAGAACAAGGAG
GCTGTCACGTCGGTGACGAGGGAGGGAGAGACCTCTGAGCAGTTGGCCAA
GAAAATGGTTTATTAGATGAGAGGATAAATTTGCTTCGAATTAGTAGTGA
GATGAGAGTTTTTCTAAGAAATGCATGATGACATATGTATGTTGACTTTA
TTTTGATGTGCGGGGATTAAGTGAACGGGGGTAGGATGATGGGACGAGTT
GGATTGCAGCAAGGCGGTGTGATTGATTTCGGGGAAACGAAACTTGAAAA
AGACGACAATAAATGTGACAAAAAGAATGAGCGCAACAACAACGA
back to top

protein sequence of NO14G02640.1

>NO14G02640.1-protein ID=NO14G02640.1-protein|Name=NO14G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MQRHHDVAGTSLPLLILCLGLMAQKCSHAFLQTRLPFTLSCGSYGLQAYT
PPSLHSSSSPLLRRRARLSTSLAAGPTEGAPTDIPIPASSDDVVFEGPIK
TENTERFICDISIPEPIAAELEETNLVKIVKLACKDEEVNWLAWKCLGYR
YVPTEGRWDNSNVFPKWRARYPEPPDLVGVTRIYEKEVDAPVKRANTALV
RSVPKMYKQSLKELLAPYGFKGFKIAELTPNRTRRAQVCNWLLYFKRELW
GVSLEKLIENKEAVTSVTREGETSEQLAKKMVY*
back to top

mRNA from alignment at chr14:782887..784452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02640.1 ID=NO14G02640.1|Name=NO14G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at chr14:782887..784452+ (Nannochloropsis oceanica)
AGGTGAATTCAAGTAAGGCAAGTGCGCAGCTATTGCAGTCGTTTTGGGGG
GCACTCCAAGGCGTAAAAAAGGATCGTCGGGAGCGGCTTTCTCCTTCTAG
TTAGTTGCAGCAGCATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTA
CCCTTACTTATTTTGTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGC
CTTCCTGCAGACCCGCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTC
TACAAGCCTACACCCCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTC
CGCCGCCGTGCCCGTCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGG
CGCCCCAACCGATATTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCG
AAGGACCGATTAAGACGGAGAACACCGAGCGATTCATTTGTGATATCTCG
ATCCCGGAGCCCATCGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGAT
TGTAAAGCTGGCGTGTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGT
GTCTCGGTGCGTTGGAGGGGGCGTGAGAGAATGAGGGAGGGAGAGATGGT
GGCTGGCCACTGCATTTAAGATATGGCCGAAGATCGGCCCGTAGTACCCA
TTCACTTTCTAAGCTCTTTATTTCTCAGGAATGCCCACTTATAGAAACCC
ACTCTTTATCAATCCCTTTTCCCTACGCCAGGCTACCGCTACGTCCCCAC
GGAAGGCCGGTGGGACAACAGTAACGTCTTCCCCAAGTGGCGCGCCCGCT
ACCCCGAGCCGCCAGACCTAGTGGGCGTCACCCGCATCTACGAGAAGTAA
GCTTTTAATGAGGGGTGTGAAGTAATGTGCTTTCGAATCAGATAAGATAT
TCGTATCGAGGAATGCGTGTATGGCGCTGTAGTCGAGTCTCTTTCCTCAA
TATCCTTTTTAGTTTCTCTTCACATCCCACTTCGTTCTCCCTGTCACTTA
CTCGCTTTCTCCCTTTCCTTGTATCCCCCTCATTGTAAACAGAGAGGTGG
ACGCCCCTGTAAAGCGTGCTAATACTGCCCTTGTTCGGTCTGTCCCCAAG
ATGTACAAACAATCATTGAAAGAACTCCTGGCACCGTATGGCTTCAAAGG
TTTTAAAATTGCGGAGCTCACCCCGAATCGAACACGCAGGGCCCAAGTAT
GTAACTGGTTATTGTACTTCAAGAGGGAATTGTGGGGGGTGAGTCTGGAA
AAACTGATTGAGAACAAGGAGGCTGTCACGTCGGTGACGAGGGAGGGAGA
GACCTCTGAGCAGTTGGCCAAGAAAATGGTTTATTAGATGAGAGGATAAA
TTTGCTTCGAATTAGTAGTGAGATGAGAGTTTTTCTAAGAAATGCATGAT
GACATATGTATGTTGACTTTATTTTGATGTGCGGGGATTAAGTGAACGGG
GGTAGGATGATGGGACGAGTTGGATTGCAGCAAGGCGGTGTGATTGATTT
CGGGGAAACGAAACTTGAAAAAGACGACAATAAATGTGACAAAAAGAATG
AGCGCAACAACAACGA
back to top

Coding sequence (CDS) from alignment at chr14:782887..784452+

>NO14G02640.1 ID=NO14G02640.1|Name=NO14G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr14:782887..784452+ (Nannochloropsis oceanica)
ATGCAGCGCCACCACGACGTGGCTGGCACCAGTCTACCCTTACTTATTTT
GTGCCTAGGACTGATGGCACAAAAGTGTTCCCATGCCTTCCTGCAGACCC
GCCTTCCGTTCACCCTATCCTGTGGCTCCTACGGTCTACAAGCCTACACC
CCTCCCTCCCTACATTCATCCTCCTCCCCTCTCCTCCGCCGCCGTGCCCG
TCTTTCCACCTCCCTCGCCGCCGGTCCGACCGAAGGCGCCCCAACCGATA
TTCCCATCCCTGCTTCCAGCGACGATGTGGTCTTCGAAGGACCGATTAAG
ACGGAGAACACCGAGCGATTCATTTGTGATATCTCGATCCCGGAGCCCAT
CGCGGCTGAATTGGAGGAGACGAACTTGGTGAAGATTGTAAAGCTGGCGT
GTAAGGACGAGGAGGTTAATTGGTTGGCGTGGAAGTGTCTCGGCTACCGC
TACGTCCCCACGGAAGGCCGGTGGGACAACAGTAACGTCTTCCCCAAGTG
GCGCGCCCGCTACCCCGAGCCGCCAGACCTAGTGGGCGTCACCCGCATCT
ACGAGAAAGAGGTGGACGCCCCTGTAAAGCGTGCTAATACTGCCCTTGTT
CGGTCTGTCCCCAAGATGTACAAACAATCATTGAAAGAACTCCTGGCACC
GTATGGCTTCAAAGGTTTTAAAATTGCGGAGCTCACCCCGAATCGAACAC
GCAGGGCCCAAGTATGTAACTGGTTATTGTACTTCAAGAGGGAATTGTGG
GGGGTGAGTCTGGAAAAACTGATTGAGAACAAGGAGGCTGTCACGTCGGT
GACGAGGGAGGGAGAGACCTCTGAGCAGTTGGCCAAGAAAATGGTTTATT
AG
back to top
Synonyms
Publications