NO14G02500, NO14G02500 (gene) Nannochloropsis oceanica

Overview
NameNO14G02500
Unique NameNO14G02500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1795
Alignment locationchr14:755621..757415 +

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Properties
Property NameValue
Description40s ribosomal protein s10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:755621..757415 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037447Rps10
IPR005326S10_plectin_N
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_024584135.1 (40s ribosomal protein s10 [Plasmopara halstedii] >CEG47766.1 40s ribosomal protein s10 [Plasmopara halstedii])

HSP 1 Score: 137.5 bits (345), Expect = 3.700e-29
Identity = 75/143 (52.45%), Postives = 94/143 (65.73%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSF 144
            M + K NR+AVY  LFKEGV+VAKKDF       S      +++PNL+VI L++SLKS GYVKETFNWQ++Y+YLT EGI+YLR YL+LP ++VP T  K+  RP RP         P G   R  FDK+K +GP G F P F
Sbjct:    1 MLVPKANRIAVYSYLFKEGVMVAKKDF-------SLPKHQAVDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRCYLHLPAEIVPATLKKQAARPTRPQA------PPTGGFGRGRFDKDKGVGPSGDFNPEF 130          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: OWZ23929.1 (40S ribosomal protein S10 [Phytophthora megakarya])

HSP 1 Score: 137.1 bits (344), Expect = 4.800e-29
Identity = 76/147 (51.70%), Postives = 95/147 (64.63%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M + K NR+AVY  LFKEGV+VAKKDF       +      +++PNL+VI L++SLKS GYVKETFNWQ++Y+YLT EGI+YLR YL+LP ++VP T  K+  RP RP           G   R  FDKEK +GP G F P F  GG
Sbjct:    1 MLVPKTNRIAVYSYLFKEGVMVAKKDF-------ALPKHEAVDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQA------PSAGGFGRGRFDKEKGVGPSGDFNPEFRRGG 134          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: KDQ52763.1 (hypothetical protein JAAARDRAFT_40040 [Jaapia argillacea MUCL 33604])

HSP 1 Score: 134.4 bits (337), Expect = 3.100e-28
Identity = 77/152 (50.66%), Postives = 98/152 (64.47%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDR-----PEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M I+K+NR  +Y NLFKEGVLVAKKD      Y +P  E +L +PNLEVI  ++SL S G+VK  F+WQ+YYY LT EG++YLR++L+LP ++VPQTH KK  RP RPAG  + G       P G+RE    D  K+    G F P F G G
Sbjct:    1 MIISKQNRRLIYENLFKEGVLVAKKD------YNAPKHE-ELEMPNLEVIKAMQSLTSKGFVKTQFSWQWYYYTLTPEGVEYLREWLHLPNEIVPQTH-KKAARPPRPAGVRQGGGEGTYRPPRGDRE----DYRKKESAPGEFRPQFAGVG 140          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: OCF56316.1 (30S small subunit ribosomal protein S10e [Kwoniella mangroviensis CBS 10435])

HSP 1 Score: 133.3 bits (334), Expect = 7.000e-28
Identity = 73/154 (47.40%), Postives = 96/154 (62.34%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDR-------PEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M I+K+NR  +Y  LFKEGVLVA KDF        P   +  ++ NLEVI  ++SL S GYVK  F+WQ+YYY LT EG+ YLR++LNLP ++VPQTH K      RP+G+ +RG+R       P G+RE R  D  ++ G  G + P FGG G
Sbjct:    1 MLISKQNRRVIYETLFKEGVLVAPKDF------NRPAHPDIPSVKNLEVIKAMQSLTSKGYVKTQFSWQWYYYTLTEEGLAYLREFLNLPSEIVPQTHMKPARPQGRPSGYGDRGNREGGAYRAPRGDREYRRRDDGEKEGASGDYRPRFGGVG 148          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_008612132.1 (30S ribosomal protein S10e [Saprolegnia diclina VS20] >XP_012202286.1 hypothetical protein SPRG_07617 [Saprolegnia parasitica CBS 223.65] >EQC34270.1 30S ribosomal protein S10e [Saprolegnia diclina VS20] >KDO26901.1 hypothetical protein SPRG_07617 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 132.9 bits (333), Expect = 9.100e-28
Identity = 70/145 (48.28%), Postives = 92/145 (63.45%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGG 146
            M + KKNR+AVY  LFKEGV+V KKDF       +     ++++PNL+VI L++SL S GYVKETFNWQ+YY+YLT EG++YLR YL+LP ++VP T  K   RP+RP   +  G             K+K +GP G F P F G
Sbjct:    1 MLVPKKNRIAVYSYLFKEGVMVGKKDF-------ALPKHGEVDVPNLQVIKLMQSLVSRGYVKETFNWQWYYWYLTAEGLEYLRAYLHLPAEIVPATLKKPAARPSRPQAPSAYG------------RKDKNMGPSGDFNPEFRG 126          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: KII85230.1 (hypothetical protein PLICRDRAFT_45410 [Plicaturopsis crispa FD-325 SS-3])

HSP 1 Score: 132.1 bits (331), Expect = 1.600e-27
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRP-----EGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M ITK+NR  +Y NLFKEGVLVAKKDF       +P  E +L++PNL+VI  L+SL S GYVK  F+WQ+YYY LT EG+++LR++L+LP ++VP TH KK  RPARPAG    GD        G+R+    D  K+ G  G + P F G G
Sbjct:    1 MIITKENRRIIYENLFKEGVLVAKKDF------NAPKHE-ELDVPNLQVIKALQSLTSKGYVKTQFSWQWYYYVLTPEGVEFLREWLHLPSEIVPATH-KKAARPARPAGVRAGGDGAYRAPRGGDRD----DYRKKEGAPGEYRPQFAGVG 140          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_003027242.1 (40S ribosomal protein S10 [Schizophyllum commune H4-8] >EFI92339.1 hypothetical protein SCHCODRAFT_70772 [Schizophyllum commune H4-8])

HSP 1 Score: 131.7 bits (330), Expect = 2.000e-27
Identity = 76/151 (50.33%), Postives = 100/151 (66.23%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGD----RPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M I+K+NR  +Y NLFKEGVLVAKKD      Y +P  E DL++PNLEVI  L+SL S GYVK  F+WQ+YYY LT EG++YLR++L+LP ++VP TH KK  RP RPA   + G+     P G+R+     ++K  G  G + P+F G G
Sbjct:    1 MIISKQNRRVIYENLFKEGVLVAKKD------YNAPKHE-DLDVPNLEVIKALQSLTSKGYVKTQFSWQWYYYTLTPEGVEYLREWLHLPAEIVPATH-KKAARPPRPAQVRQGGEGAYRAPRGDRDDY---RKKEGGAPGDYRPAFAGVG 140          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: CCA15088.1 (40S ribosomal protein S10 putative [Albugo laibachii Nc14])

HSP 1 Score: 131.7 bits (330), Expect = 2.000e-27
Identity = 71/143 (49.65%), Postives = 94/143 (65.73%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSF 144
            M + KKNR+AVY  LFKEGV+VAKKD+       S    + +++PNL+VI L++S KS  +V+ETF+WQ +Y+YLT EGIDYLR +L+LP+++VP T  K+   PARPA          G   R  FDKEK +GP G F P F
Sbjct:    1 MLVLKKNRIAVYSYLFKEGVMVAKKDY-------SLPKHDVIDVPNLQVIKLMQSFKSKNFVRETFSWQCFYWYLTNEGIDYLRGFLHLPEEIVPATLKKQAAIPARPAA--------PGNFGRGRFDKEKSVGPSGEFNPEF 128          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: OQR91797.1 (40S ribosomal protein S10 [Achlya hypogyna])

HSP 1 Score: 131.3 bits (329), Expect = 2.600e-27
Identity = 71/145 (48.97%), Postives = 92/145 (63.45%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGG 146
            M + KKNR+AVY  LFKEGV+V KKD      Y  P    ++++PNL+VI L++SL S GYVKETFNWQ+YY+YLT EG++YLR YL+LP ++VP T  K   RP+RP   +  G             K+K +GP G F P F G
Sbjct:    1 MLVPKKNRIAVYSYLFKEGVMVGKKD------YALPK-HGEVDVPNLQVIKLMQSLVSRGYVKETFNWQWYYWYLTAEGLEYLRAYLHLPAEIVPATLKKPAARPSRPQAPSAYG------------RKDKNMGPAGDFNPEFRG 126          
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_009039112.1 (hypothetical protein AURANDRAFT_29821, partial [Aureococcus anophagefferens] >EGB06159.1 hypothetical protein AURANDRAFT_29821, partial [Aureococcus anophagefferens])

HSP 1 Score: 131.0 bits (328), Expect = 3.500e-27
Identity = 65/105 (61.90%), Postives = 80/105 (76.19%), Query Frame = 0
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRP 106
            MFI KKNRL VY  LFKEGVLVAKKD +           +++++PNLEV+NL+KSLKS GYV+ETFNWQYYY+YLT EGI+YLR+YL+LP ++VP T  K   RP
Sbjct:    1 MFIPKKNRLEVYSYLFKEGVLVAKKDNFK-------PKHDEIDVPNLEVMNLMKSLKSRGYVRETFNWQYYYWYLTNEGIEYLREYLHLPAEIVPATLKKASARP 98          
The following BLAST results are available for this feature:
BLAST of NO14G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024584135.13.700e-2952.4540s ribosomal protein s10 [Plasmopara halstedii] >... [more]
OWZ23929.14.800e-2951.7040S ribosomal protein S10 [Phytophthora megakarya][more]
KDQ52763.13.100e-2850.66hypothetical protein JAAARDRAFT_40040 [Jaapia argi... [more]
OCF56316.17.000e-2847.4030S small subunit ribosomal protein S10e [Kwoniell... [more]
XP_008612132.19.100e-2848.2830S ribosomal protein S10e [Saprolegnia diclina VS... [more]
KII85230.11.600e-2750.66hypothetical protein PLICRDRAFT_45410 [Plicaturops... [more]
XP_003027242.12.000e-2750.3340S ribosomal protein S10 [Schizophyllum commune H... [more]
CCA15088.12.000e-2749.6540S ribosomal protein S10 putative [Albugo laibach... [more]
OQR91797.12.600e-2748.9740S ribosomal protein S10 [Achlya hypogyna][more]
XP_009039112.13.500e-2761.90hypothetical protein AURANDRAFT_29821, partial [Au... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002467NSK002467Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02500.1NO14G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590477gene_5832Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100140g4gene5921Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02500.1NO14G02500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02500 ID=NO14G02500|Name=NO14G02500|organism=Nannochloropsis oceanica|type=gene|length=1795bp
CCCAGTGCATCAGAACGAAAACGTGAACGGTTGGTGGGAGTCTTCCGGTG
GCAATGGTACATGAAGTAAGGGCCTTGAGCAGCGCACTATATTGGATGTA
TGCGATGTAGGAGTGTGTGACAAGGGGATCGAAGGAGTTTTGGTAGTGCT
AACCACCTTAAACGGTGTTAGCCACTCGCCCCTCACTCCCCCTCGCCTTC
TCACCACTCACGCGGCTCCTCTCCAGCTTTTTCTTCCCTCCTTTCCACTC
CCACGCTGTATACCTTGCTTGGGGGCGAAGTAATGGACATTCGTGTCTAT
GGATAATTCCCTCAGGCATATTTATGCAGCATGCTGGGCTGGTGTCGTGG
TAGATTTGTGCGGCTCATGAGATTAACCCCTCCAGACCACCCCCATCCAT
CATTACCCCTTTGACCCACGTCATTCTCCCTCCATTTTATATAGGTCTAG
CTTCCTTTTGGAGGGTTACTAGCCAGTCGGACAGAGCATCATGgtacgtc
atagtagaattgggactatgggcggcggatgggaaaggatgagaggagtt
ggagaagagtagttggaggaggggtgcacgaaaggcagcctcacacacac
accaatacaccatacttgcagTTCATCACCAAGAAGAACCGCCTGGCCGT
CTATCACAACCTCTTCAAGGgtacgtttattgtttgatgatgagaaattt
tgtgaagagagcctgcattcttccccctctcgtctccctacggcttgcca
accccccaccgcacacatgatgtcaccctcgctgatccttcctcctgcca
ccgctatcacaatagAGGGCGTGCTTGTGGCCAAGAAGGATTTCTACTCC
GTCTGGACGTACAAGTCCCCCGACGGCGAAAACGACCTCAACTTGCCCAA
CCTCGAGGTGATCAACCTGCTCAAGTCTCTTAAGTCATCGGGCTACGTCA
AGGAGACCTTCAACTGgtgcgcgccatgggggaaataaggaagggggagg
aaagagaggcataagggaaaatctgtctggtggaggaggttgctgggtga
ttggagggggagaggcctggcctgtgtggatgctgatcacattcatgctg
gttgggcggctcctcccgtcatctttctcccttccatgcatcgattttct
tccctaggtctctcattattccttctgcctttttcctcacgccgcgcctc
tttttttttcccctccaaccccttacttccttccttatcacttagGCAAT
ACTACTACTACTACCTGACCGTGGAGGGGATTGACTACCTCCGTCAGTAC
CTCAATCTCCCCCAAGACGTCGTCCCTCAGACGCACAGTAAGAAAGAGGG
CCGCCCTGCCCGTCCAGCTGGCTTTGCCGAGCGAGGTGACCGCCCTGAAG
GGGAGAGGGAGCGACGGCCGTTTGATAAGGAGAAGAGGCTGGGACCCGAT
GGCTCATTTGCGCCGTCTTTCGGTGGGGGTGGATTCGGACGAGGCGGCGG
TGGCAATCGAGAGGGAGGGTACCGTGGTTAGATTCGTTTCCTCTTTGTGA
GAGGACCGGCGAGGAGTGAGGGAGATACTGGGGGAGGGATGGAGAGAAGA
CGGCGATGTAGCACAAAACTCAAATCGGCCCGTCTTGGAGGAGGGAAGAA
GGATGAGGGGCTCGTGTAAACGCACTTCAGTTACTGAGCAGATAGAATGG
TAACGCGTATGTGCGCTTGCCTCTCTCCTTTCCTATTCCCTTTGTTCAAG
CGGCCGCGTGGTTCCTACGACAAGGAAATGAAGGAACAACATTTA
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protein sequence of NO14G02500.1

>NO14G02500.1-protein ID=NO14G02500.1-protein|Name=NO14G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVI
NLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSK
KEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGGFGR
GGGGNREGGYRG*
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Synonyms
Publications